Wall clock time and date at job start Tue Mar 31 2020 23:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86790 * 120.00078 * 2 1 4 4 H 1.48495 * 109.47305 * 239.99875 * 3 2 1 5 5 H 1.48507 * 109.47298 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47161 * 119.99734 * 3 2 1 7 7 C 1.37879 * 119.99587 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99889 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00151 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47041 * 179.97438 * 9 7 2 11 11 C 1.46496 * 119.99951 * 274.99836 * 10 9 7 12 12 C 1.50700 * 109.47090 * 274.99830 * 11 10 9 13 13 C 1.38666 * 120.41563 * 90.00293 * 12 11 10 14 14 C 1.38633 * 118.41806 * 180.02562 * 13 12 11 15 15 C 1.38224 * 119.16104 * 0.02562 * 14 13 12 16 16 N 1.31849 * 120.76352 * 359.97438 * 15 14 13 17 17 C 1.31883 * 121.72702 * 359.71142 * 16 15 14 18 18 S 1.65599 * 119.99889 * 94.99599 * 10 9 7 19 19 O 1.42105 * 104.27797 * 206.07318 * 18 10 9 20 20 O 1.42101 * 104.27901 * 333.93026 * 18 10 9 21 21 C 1.81397 * 104.44825 * 90.00206 * 18 10 9 22 22 C 1.53009 * 109.47235 * 179.97438 * 21 18 10 23 23 H 1.08998 * 109.82325 * 305.56530 * 22 21 18 24 24 C 1.54384 * 109.82797 * 184.58534 * 22 21 18 25 25 C 1.55309 * 102.24889 * 219.13102 * 24 22 21 26 26 C 1.54942 * 100.94240 * 34.13567 * 25 24 22 27 27 O 1.43233 * 109.82707 * 66.45421 * 22 21 18 28 28 H 0.97003 * 120.00050 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.47477 * 59.99547 * 9 7 2 30 30 H 1.09004 * 109.46759 * 299.99464 * 9 7 2 31 31 H 1.09001 * 109.47302 * 35.00502 * 11 10 9 32 32 H 1.09002 * 109.47116 * 154.99749 * 11 10 9 33 33 H 1.08000 * 120.79418 * 0.02562 * 13 12 11 34 34 H 1.08002 * 120.41513 * 179.97438 * 14 13 12 35 35 H 1.08003 * 119.61988 * 179.97438 * 15 14 13 36 36 H 1.08005 * 119.62018 * 180.31226 * 17 16 15 37 37 H 1.09004 * 109.47032 * 299.99803 * 21 18 10 38 38 H 1.09000 * 109.47124 * 60.00075 * 21 18 10 39 39 H 1.08997 * 110.85350 * 337.32082 * 24 22 21 40 40 H 1.09002 * 110.84332 * 100.94498 * 24 22 21 41 41 H 1.09000 * 111.12331 * 276.21753 * 25 24 22 42 42 H 1.09001 * 111.15687 * 152.07132 * 25 24 22 43 43 H 1.09000 * 110.31196 * 204.63573 * 26 25 24 44 44 H 1.09003 * 110.30852 * 82.47459 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.7629 -4.0977 -1.2633 12 6 1.8176 -5.0952 -1.8817 13 6 0.8252 -4.6745 -2.7541 14 6 -0.0219 -5.6274 -3.2985 15 6 0.1492 -6.9554 -2.9557 16 7 1.1042 -7.3191 -2.1225 17 6 1.9319 -6.4411 -1.5904 18 16 2.6460 -4.3232 1.4292 19 8 3.9351 -4.8611 1.1682 20 8 2.4609 -3.3026 2.4004 21 6 1.4370 -5.6546 1.6667 22 6 1.7437 -6.3957 2.9697 23 1 2.7786 -6.7379 2.9655 24 6 0.7919 -7.6015 3.1229 25 6 0.4731 -7.5786 4.6427 26 6 0.4821 -6.0546 4.9222 27 8 1.5240 -5.5261 4.0865 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8904 31 1 2.9023 -3.2584 -1.9447 32 1 3.7239 -4.5762 -1.0751 33 1 0.7148 -3.6295 -3.0035 34 1 -0.8062 -5.3355 -3.9813 35 1 -0.5068 -7.7038 -3.3752 36 1 2.7053 -6.7773 -0.9156 37 1 0.4343 -5.2301 1.7171 38 1 1.4950 -6.3514 0.8305 39 1 -0.1142 -7.4578 2.5343 40 1 1.2930 -8.5289 2.8456 41 1 1.2491 -8.0874 5.2146 42 1 -0.5074 -8.0095 4.8456 43 1 0.7055 -5.8637 5.9719 44 1 -0.4784 -5.6150 4.6532 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172061124.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:20 Heat of formation + Delta-G solvation = -77.265492 kcal Electronic energy + Delta-G solvation = -28784.512781 eV Core-core repulsion = 24829.286721 eV Total energy + Delta-G solvation = -3955.226060 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.08553 -39.56408 -36.48785 -36.03832 -35.16974 -32.90000 -32.49307 -32.10848 -31.77253 -31.17622 -27.50824 -26.55406 -25.34551 -23.52484 -22.56300 -22.05117 -21.76059 -21.19739 -18.19236 -17.26423 -17.15503 -16.89549 -16.55600 -16.18193 -15.97315 -15.74335 -15.49250 -15.00236 -14.56286 -14.42888 -13.93872 -13.83715 -13.46703 -13.42650 -13.23288 -12.90429 -12.47772 -12.30299 -12.24969 -12.01792 -11.88924 -11.66479 -11.62649 -11.37577 -11.31535 -11.18893 -11.04874 -11.03325 -10.65837 -10.55514 -10.17768 -10.02154 -9.80629 -9.69750 -9.66118 -9.40194 -8.95623 -8.43548 -8.11692 -6.06184 -4.09316 0.81698 1.15760 1.38810 3.32950 3.34994 3.38318 3.44572 3.64337 3.91623 4.23791 4.34290 4.44874 4.46990 4.61429 4.64665 4.74221 4.91238 4.92318 4.99057 5.07495 5.12415 5.15418 5.20289 5.28878 5.40701 5.44979 5.49619 5.54274 5.60435 5.71059 5.71952 5.77545 5.85783 5.98151 6.12806 6.21001 6.27507 6.55629 6.76831 6.85762 7.15838 7.34667 7.53073 7.91462 7.98794 8.20139 8.92841 9.55625 11.02527 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008420 B = 0.005482 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3324.718238 B = 5106.045303 C = 7324.285835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.063 3.937 3 Si 0.896 3.104 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.061 0.939 9 C 0.257 3.743 10 N -0.980 5.980 11 C 0.159 3.841 12 C -0.148 4.148 13 C -0.051 4.051 14 C -0.172 4.172 15 C 0.088 3.912 16 N -0.486 5.486 17 C 0.089 3.911 18 S 2.607 3.393 19 O -0.975 6.975 20 O -0.918 6.918 21 C -0.659 4.659 22 C 0.092 3.908 23 H 0.093 0.907 24 C -0.142 4.142 25 C -0.158 4.158 26 C 0.048 3.952 27 O -0.368 6.368 28 H 0.264 0.736 29 H 0.035 0.965 30 H 0.038 0.962 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.142 0.858 34 H 0.133 0.867 35 H 0.151 0.849 36 H 0.153 0.847 37 H 0.135 0.865 38 H 0.132 0.868 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.866 -16.631 -0.290 16.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.139 4.139 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.563 4.563 8 H 0.080 0.920 9 C 0.135 3.865 10 N -0.817 5.817 11 C 0.032 3.968 12 C -0.152 4.152 13 C -0.077 4.077 14 C -0.192 4.192 15 C -0.069 4.069 16 N -0.195 5.195 17 C -0.069 4.069 18 S 2.697 3.303 19 O -0.965 6.965 20 O -0.908 6.908 21 C -0.785 4.785 22 C 0.033 3.967 23 H 0.111 0.889 24 C -0.181 4.181 25 C -0.196 4.196 26 C -0.028 4.028 27 O -0.287 6.287 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.160 0.840 34 H 0.151 0.849 35 H 0.169 0.831 36 H 0.170 0.830 37 H 0.153 0.847 38 H 0.150 0.850 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.107 0.893 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.123 -16.919 0.518 16.964 hybrid contribution -0.688 1.300 -0.624 1.598 sum -1.811 -15.619 -0.106 15.724 Atomic orbital electron populations 1.69908 1.05982 1.27163 1.50640 1.24908 0.94868 0.99207 0.94950 0.86587 0.79596 0.82624 0.78837 1.20210 1.21260 1.19934 1.21422 0.93663 0.90434 1.50813 0.92034 1.19083 0.86997 0.82156 0.98258 1.57628 1.60138 1.44990 1.18966 1.20114 0.93745 0.95996 0.86966 1.21647 0.98997 0.96217 0.98295 1.21706 0.92147 1.00702 0.93194 1.22184 1.00782 0.94411 1.01780 1.22696 0.95140 0.94813 0.94265 1.67654 1.04285 1.38570 1.08967 1.22731 0.97157 0.89221 0.97756 1.05175 0.75388 0.75434 0.74254 1.93501 1.36138 1.81920 1.84949 1.93646 1.85955 1.51894 1.59319 1.31304 1.21447 1.20659 1.05125 1.22311 1.00304 0.89678 0.84411 0.88908 1.23144 1.00093 0.98097 0.96725 1.23312 1.03060 0.97211 0.95971 1.23440 0.91655 0.92169 0.95547 1.88601 1.56140 1.47766 1.36238 0.92692 0.94717 0.94387 0.88166 0.88709 0.83997 0.84888 0.83139 0.83026 0.84708 0.84960 0.89900 0.89522 0.90151 0.89717 0.89264 0.91775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.73 13.29 55.43 0.74 -24.99 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -14.37 9.38 -34.44 -0.32 -14.70 16 8 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.26 6.19 5.01 -5.19 -0.03 6.17 16 10 N -0.98 -19.62 2.68 -116.95 -0.31 -19.94 16 11 C 0.16 2.64 5.81 -5.20 -0.03 2.61 16 12 C -0.15 -2.16 5.48 -104.49 -0.57 -2.73 16 13 C -0.05 -0.70 9.55 -39.28 -0.38 -1.08 16 14 C -0.17 -2.01 10.11 -39.44 -0.40 -2.41 16 15 C 0.09 1.04 11.18 -17.55 -0.20 0.84 16 16 N -0.49 -6.64 10.36 -13.25 -0.14 -6.78 16 17 C 0.09 1.22 9.19 -17.55 -0.16 1.06 16 18 S 2.61 51.71 5.25 -107.50 -0.56 51.15 16 19 O -0.97 -19.74 16.53 -57.54 -0.95 -20.69 16 20 O -0.92 -22.63 16.60 -58.95 -0.98 -23.60 16 21 C -0.66 -9.95 5.73 37.16 0.21 -9.73 16 22 C 0.09 1.28 3.51 -26.00 -0.09 1.19 16 23 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 24 C -0.14 -1.46 6.54 -24.78 -0.16 -1.62 16 25 C -0.16 -1.42 7.16 -24.48 -0.18 -1.60 16 26 C 0.05 0.57 7.78 38.18 0.30 0.86 16 27 O -0.37 -5.95 10.47 -35.28 -0.37 -6.31 16 28 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.03 0.83 7.69 -51.93 -0.40 0.43 16 30 H 0.04 1.00 7.61 -51.93 -0.40 0.60 16 31 H 0.10 1.66 8.06 -51.93 -0.42 1.24 16 32 H 0.09 1.47 6.77 -51.93 -0.35 1.12 16 33 H 0.14 1.97 7.96 -52.49 -0.42 1.55 16 34 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.15 1.31 8.06 -52.48 -0.42 0.89 16 36 H 0.15 1.90 7.71 -52.48 -0.40 1.49 16 37 H 0.13 2.02 8.14 -51.92 -0.42 1.60 16 38 H 0.13 1.72 5.93 -51.92 -0.31 1.41 16 39 H 0.08 0.83 7.85 -51.93 -0.41 0.43 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 376.73 15.07 5.68 5.68 Total: -1.00 -34.69 376.73 -10.47 -45.17 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -6.45 Total: 3.14 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -2.10 Total: -19.48 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: 0.29 Total: -51.71 kcal Atomic # 8 Polarization: -48.31 SS G_CDS: -2.30 Total: -50.61 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 51.71 SS G_CDS: -0.56 Total: 51.15 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.69 -10.47 -45.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172061124.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.100 kcal (2) G-P(sol) polarization free energy of solvation -34.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds