Wall clock time and date at job start Tue Mar 31 2020 23:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 119.99780 * 2 1 4 4 H 1.48504 * 109.47394 * 273.71969 * 3 2 1 5 5 H 1.48498 * 109.47357 * 33.71837 * 3 2 1 6 6 H 1.48501 * 109.47268 * 153.72081 * 3 2 1 7 7 C 1.37870 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00242 * 354.40529 * 7 2 1 9 9 C 1.50706 * 120.00267 * 174.68164 * 7 2 1 10 10 N 1.46498 * 109.47542 * 183.39865 * 9 7 2 11 11 C 1.46500 * 119.99770 * 85.34618 * 10 9 7 12 12 C 1.50692 * 109.47358 * 82.71774 * 11 10 9 13 13 C 1.38230 * 119.61790 * 94.99721 * 12 11 10 14 14 C 1.38629 * 119.15936 * 179.97438 * 13 12 11 15 15 C 1.38669 * 118.42333 * 359.97438 * 14 13 12 16 16 C 1.38178 * 119.16292 * 0.02562 * 15 14 13 17 17 N 1.31857 * 119.61875 * 274.72240 * 12 11 10 18 18 S 1.65597 * 119.99781 * 265.34333 * 10 9 7 19 19 O 1.42108 * 104.27442 * 206.06817 * 18 10 9 20 20 O 1.42091 * 104.28141 * 333.92928 * 18 10 9 21 21 C 1.81405 * 104.44942 * 90.00302 * 18 10 9 22 22 C 1.52994 * 109.46950 * 179.97438 * 21 18 10 23 23 H 1.08994 * 110.33838 * 307.24427 * 22 21 18 24 24 C 1.54483 * 110.37052 * 184.99686 * 22 21 18 25 25 C 1.54507 * 104.06420 * 217.19034 * 24 22 21 26 26 C 1.54484 * 104.06177 * 0.02562 * 25 24 22 27 27 O 1.44417 * 104.80362 * 23.97855 * 26 25 24 28 28 H 0.96997 * 120.00251 * 0.02562 * 1 2 3 29 29 H 1.09007 * 109.46749 * 303.40353 * 9 7 2 30 30 H 1.09001 * 109.46806 * 63.39280 * 9 7 2 31 31 H 1.09003 * 109.46614 * 202.72207 * 11 10 9 32 32 H 1.09008 * 109.46735 * 322.71511 * 11 10 9 33 33 H 1.07995 * 120.41856 * 0.02562 * 13 12 11 34 34 H 1.08003 * 120.78924 * 179.97438 * 14 13 12 35 35 H 1.07996 * 120.41953 * 180.02562 * 15 14 13 36 36 H 1.08003 * 119.61963 * 179.97438 * 16 15 14 37 37 H 1.09007 * 109.46751 * 299.99831 * 21 18 10 38 38 H 1.09003 * 109.47254 * 59.99485 * 21 18 10 39 39 H 1.09000 * 110.50913 * 335.83695 * 24 22 21 40 40 H 1.09000 * 110.51060 * 98.54408 * 24 22 21 41 41 H 1.09005 * 110.51203 * 118.64291 * 25 24 22 42 42 H 1.08998 * 110.51229 * 241.21707 * 25 24 22 43 43 H 1.09000 * 110.37276 * 142.81214 * 26 25 24 44 44 H 1.09000 * 110.36795 * 265.03167 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4179 2.0919 -1.3971 5 1 1.4880 2.6287 0.7772 6 1 3.5837 1.4188 0.6199 7 6 2.0045 -1.1940 0.0005 8 1 1.4684 -2.1271 0.0921 9 6 3.5067 -1.1969 -0.1204 10 7 3.9895 -2.5789 -0.1766 11 6 4.0326 -3.2881 -1.4578 12 6 5.2941 -2.9184 -2.1945 13 6 6.4112 -3.7248 -2.0837 14 6 7.5665 -3.3760 -2.7660 15 6 7.5547 -2.2242 -3.5381 16 6 6.4003 -1.4674 -3.6009 17 7 5.3178 -1.8322 -2.9417 18 16 4.4866 -3.3392 1.2079 19 8 5.4117 -4.3191 0.7568 20 8 4.8989 -2.2800 2.0607 21 6 2.9869 -4.1294 1.8538 22 6 3.3198 -4.8740 3.1482 23 1 4.1607 -5.5495 2.9910 24 6 2.0869 -5.6580 3.6499 25 6 2.1561 -5.5227 5.1875 26 6 3.4223 -4.6723 5.4328 27 8 3.6155 -3.9356 4.2058 28 1 -0.4850 0.8400 -0.0004 29 1 3.7989 -0.6725 -1.0303 30 1 3.9417 -0.6948 0.7438 31 1 4.0183 -4.3632 -1.2785 32 1 3.1663 -3.0082 -2.0573 33 1 6.3841 -4.6158 -1.4741 34 1 8.4546 -3.9868 -2.6979 35 1 8.4367 -1.9224 -4.0834 36 1 6.3831 -0.5688 -4.1997 37 1 2.2332 -3.3681 2.0557 38 1 2.6022 -4.8352 1.1176 39 1 1.1689 -5.2113 3.2681 40 1 2.1544 -6.7053 3.3553 41 1 1.2723 -5.0090 5.5658 42 1 2.2554 -6.5032 5.6531 43 1 3.2639 -3.9874 6.2658 44 1 4.2794 -5.3163 5.6298 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172065095.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:58 Heat of formation + Delta-G solvation = -72.677704 kcal Electronic energy + Delta-G solvation = -28539.195653 eV Core-core repulsion = 24584.168535 eV Total energy + Delta-G solvation = -3955.027118 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.91492 -39.43389 -36.59261 -35.93638 -35.31277 -32.67230 -32.38089 -32.16326 -31.68285 -31.21415 -28.06835 -26.32293 -25.57375 -23.27327 -22.39041 -22.11804 -21.49174 -20.99300 -18.30932 -17.29927 -17.00302 -16.64641 -16.54236 -16.09520 -15.85699 -15.69752 -15.38316 -15.28150 -15.03303 -14.32997 -14.03494 -13.75931 -13.27706 -13.19885 -12.93833 -12.65358 -12.53954 -12.35989 -12.30130 -12.00683 -11.86006 -11.73317 -11.60467 -11.49205 -11.27990 -11.24654 -11.18167 -10.79483 -10.73489 -10.44895 -10.17790 -10.05172 -9.83563 -9.65327 -9.55692 -9.16909 -8.80323 -8.56655 -8.08756 -6.11554 -4.10792 0.77891 1.33495 1.52951 3.23280 3.34100 3.41598 3.49165 3.72495 4.08994 4.23808 4.43385 4.46718 4.56995 4.68825 4.71643 4.81826 4.96377 4.96793 5.02680 5.08481 5.22493 5.24835 5.26175 5.35561 5.37659 5.49115 5.54702 5.65163 5.71378 5.76961 5.85245 5.95744 5.98886 6.06865 6.14614 6.21221 6.38659 6.50778 6.74403 6.92143 7.04657 7.19986 7.35870 7.61729 8.31491 8.43455 8.88108 9.50933 11.00808 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008898 B = 0.005350 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3145.859650 B = 5232.752746 C = 7579.142274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.079 3.921 3 Si 0.866 3.134 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.211 3.789 10 N -0.973 5.973 11 C 0.178 3.822 12 C 0.117 3.883 13 C -0.154 4.154 14 C -0.084 4.084 15 C -0.180 4.180 16 C 0.092 3.908 17 N -0.462 5.462 18 S 2.612 3.388 19 O -0.975 6.975 20 O -0.941 6.941 21 C -0.629 4.629 22 C 0.084 3.916 23 H 0.079 0.921 24 C -0.143 4.143 25 C -0.156 4.156 26 C 0.041 3.959 27 O -0.360 6.360 28 H 0.265 0.735 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.146 0.854 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.152 0.848 37 H 0.156 0.844 38 H 0.139 0.861 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.095 0.905 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.185 -12.679 1.438 15.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.124 4.124 3 Si 0.692 3.308 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.582 4.582 8 H 0.097 0.903 9 C 0.088 3.912 10 N -0.809 5.809 11 C 0.051 3.949 12 C -0.023 4.023 13 C -0.174 4.174 14 C -0.110 4.110 15 C -0.201 4.201 16 C -0.065 4.065 17 N -0.172 5.172 18 S 2.705 3.295 19 O -0.966 6.966 20 O -0.931 6.931 21 C -0.757 4.757 22 C 0.024 3.976 23 H 0.096 0.904 24 C -0.182 4.182 25 C -0.194 4.194 26 C -0.036 4.036 27 O -0.279 6.279 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.122 0.878 33 H 0.164 0.836 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.169 0.831 37 H 0.174 0.826 38 H 0.157 0.843 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.113 0.887 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.176 -11.794 1.710 15.041 hybrid contribution 0.271 0.134 -0.045 0.306 sum 9.448 -11.660 1.664 15.099 Atomic orbital electron populations 1.69895 1.06209 1.27119 1.50038 1.24784 0.94646 0.98990 0.94002 0.86950 0.81093 0.83953 0.78762 1.19900 1.21005 1.18372 1.21416 0.89814 0.94991 1.51958 0.90337 1.19696 0.95396 0.76958 0.99155 1.57237 1.81055 1.24364 1.18228 1.19954 0.94505 0.95280 0.85164 1.21843 0.96378 0.90402 0.93657 1.22269 0.93393 1.02084 0.99699 1.21558 0.98132 0.96266 0.95075 1.22099 0.99862 0.96783 1.01316 1.22769 0.88490 0.98848 0.96427 1.67573 1.28722 1.14864 1.05993 1.04841 0.76291 0.74446 0.73937 1.93497 1.58990 1.63530 1.80569 1.93572 1.79819 1.52863 1.66861 1.30784 1.25622 1.13915 1.05382 1.22582 0.97577 0.90232 0.87179 0.90360 1.22960 0.99084 1.00826 0.95298 1.22967 0.99460 1.00809 0.96177 1.23444 0.96374 0.95239 0.88497 1.89342 1.89910 1.34082 1.14560 0.92554 0.93573 0.93409 0.89586 0.87848 0.83599 0.85187 0.85297 0.83073 0.82572 0.84303 0.89580 0.90204 0.90311 0.90501 0.88665 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.96 55.43 0.77 -25.71 16 2 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 3 Si 0.87 21.65 27.50 -169.99 -4.67 16.97 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.26 -6.44 6.51 56.52 0.37 -6.07 16 7 C -0.54 -14.56 9.93 -34.44 -0.34 -14.90 16 8 H 0.08 2.15 8.06 -52.49 -0.42 1.73 16 9 C 0.21 5.11 4.47 -5.19 -0.02 5.09 16 10 N -0.97 -19.72 2.69 -116.94 -0.31 -20.03 16 11 C 0.18 3.10 5.60 -5.20 -0.03 3.07 16 12 C 0.12 2.04 6.34 -82.59 -0.52 1.52 16 13 C -0.15 -2.36 9.27 -39.44 -0.37 -2.72 16 14 C -0.08 -1.09 10.18 -39.28 -0.40 -1.49 16 15 C -0.18 -2.25 10.11 -39.44 -0.40 -2.65 16 16 C 0.09 1.35 11.18 -17.55 -0.20 1.16 16 17 N -0.46 -8.38 10.07 -9.47 -0.10 -8.48 16 18 S 2.61 49.97 5.30 -107.50 -0.57 49.40 16 19 O -0.98 -17.89 15.48 -57.54 -0.89 -18.78 16 20 O -0.94 -21.89 16.34 -57.61 -0.94 -22.83 16 21 C -0.63 -9.99 5.79 37.15 0.22 -9.77 16 22 C 0.08 1.20 3.24 -25.96 -0.08 1.11 16 23 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 24 C -0.14 -1.61 6.63 -25.16 -0.17 -1.78 16 25 C -0.16 -1.56 7.09 -25.16 -0.18 -1.74 16 26 C 0.04 0.48 7.63 37.94 0.29 0.77 16 27 O -0.36 -5.99 11.06 -35.23 -0.39 -6.38 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.05 1.14 7.33 -51.93 -0.38 0.76 16 30 H 0.05 1.24 5.89 -51.93 -0.31 0.93 16 31 H 0.09 1.19 7.42 -51.93 -0.39 0.81 16 32 H 0.10 1.85 8.12 -51.92 -0.42 1.43 16 33 H 0.15 2.12 7.06 -52.49 -0.37 1.75 16 34 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 35 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 36 H 0.15 1.80 8.06 -52.48 -0.42 1.38 16 37 H 0.16 2.79 8.14 -51.92 -0.42 2.37 16 38 H 0.14 1.74 8.14 -51.92 -0.42 1.32 16 39 H 0.09 1.02 7.87 -51.93 -0.41 0.61 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 375.42 15.07 5.66 5.66 Total: -1.00 -35.25 375.42 -10.26 -45.51 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.51 Total: 4.85 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: -2.30 Total: -20.19 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: 0.36 Total: -54.22 kcal Atomic # 8 Polarization: -45.76 SS G_CDS: -2.22 Total: -47.98 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.97 kcal Atomic # 16 Polarization: 49.97 SS G_CDS: -0.57 Total: 49.40 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.25 -10.26 -45.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172065095.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.172 kcal (2) G-P(sol) polarization free energy of solvation -35.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds