Wall clock time and date at job start Tue Mar 31 2020 23:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99872 * 2 1 4 4 H 1.48508 * 109.46691 * 269.98818 * 3 2 1 5 5 H 1.48490 * 109.47485 * 29.98867 * 3 2 1 6 6 H 1.48498 * 109.47269 * 149.99746 * 3 2 1 7 7 C 1.37877 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00174 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99711 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.46953 * 179.97438 * 9 7 2 11 11 C 1.46504 * 119.99438 * 85.00003 * 10 9 7 12 12 C 1.50707 * 109.46935 * 85.00508 * 11 10 9 13 13 C 1.38227 * 119.62059 * 95.01845 * 12 11 10 14 14 C 1.38627 * 119.15702 * 179.74122 * 13 12 11 15 15 C 1.38669 * 118.42389 * 0.47826 * 14 13 12 16 16 C 1.38186 * 119.16143 * 359.49762 * 15 14 13 17 17 N 1.31856 * 119.61137 * 274.99275 * 12 11 10 18 18 S 1.65596 * 120.00250 * 264.99836 * 10 9 7 19 19 O 1.42102 * 104.27470 * 26.07263 * 18 10 9 20 20 O 1.42095 * 104.27746 * 153.92858 * 18 10 9 21 21 C 1.81401 * 104.44929 * 270.00164 * 18 10 9 22 22 C 1.52999 * 109.46788 * 179.97438 * 21 18 10 23 23 H 1.09003 * 110.27616 * 60.63712 * 22 21 18 24 24 C 1.54944 * 110.30920 * 182.83266 * 22 21 18 25 25 C 1.55310 * 100.94340 * 155.36081 * 24 22 21 26 26 C 1.54384 * 102.25104 * 325.86655 * 25 24 22 27 27 O 1.43239 * 107.58736 * 21.35812 * 26 25 24 28 28 H 0.97002 * 119.99762 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47622 * 59.99824 * 9 7 2 30 30 H 1.09001 * 109.47569 * 299.99216 * 9 7 2 31 31 H 1.08997 * 109.47679 * 324.99975 * 11 10 9 32 32 H 1.09003 * 109.46652 * 204.99935 * 11 10 9 33 33 H 1.07997 * 120.41915 * 359.97438 * 13 12 11 34 34 H 1.08008 * 120.78688 * 180.22921 * 14 13 12 35 35 H 1.08002 * 120.42244 * 179.78279 * 15 14 13 36 36 H 1.07996 * 119.61757 * 180.25243 * 16 15 14 37 37 H 1.08997 * 109.46991 * 299.99413 * 21 18 10 38 38 H 1.08999 * 109.46982 * 60.00139 * 21 18 10 39 39 H 1.09002 * 111.12907 * 273.27836 * 24 22 21 40 40 H 1.08996 * 111.12443 * 37.44139 * 24 22 21 41 41 H 1.08997 * 110.84893 * 207.67480 * 25 24 22 42 42 H 1.09000 * 111.02111 * 84.14008 * 25 24 22 43 43 H 1.09000 * 109.82712 * 261.84253 * 26 25 24 44 44 H 1.08999 * 109.82580 * 140.86710 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4969 2.0462 -1.4002 5 1 1.4466 2.6527 0.6997 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.7631 -4.0975 1.2645 12 6 1.8178 -5.0951 1.8829 13 6 2.0078 -6.4459 1.6594 14 6 1.1357 -7.3554 2.2373 15 6 0.0945 -6.8697 3.0136 16 6 -0.0322 -5.5053 3.1929 17 7 0.8192 -4.6692 2.6313 18 16 2.6462 -4.3233 -1.4281 19 8 2.4611 -3.3026 -2.3993 20 8 3.9352 -4.8611 -1.1670 21 6 1.4371 -5.6547 -1.6654 22 6 1.7432 -6.3950 -2.9690 23 1 2.7398 -6.8346 -2.9287 24 6 0.6794 -7.4915 -3.2272 25 6 0.7707 -7.6331 -4.7712 26 6 1.0840 -6.1879 -5.2147 27 8 1.6382 -5.4997 -4.0874 28 1 -0.4850 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6241 -2.5568 0.8903 31 1 2.9024 -3.2582 1.9459 32 1 3.7242 -4.5761 1.0762 33 1 2.8276 -6.7885 1.0454 34 1 1.2619 -8.4169 2.0831 35 1 -0.6059 -7.5493 3.4762 36 1 -0.8380 -5.1193 3.7995 37 1 1.4952 -6.3514 -0.8293 38 1 0.4345 -5.2302 -1.7159 39 1 0.9477 -8.4240 -2.7307 40 1 -0.3119 -7.1569 -2.9214 41 1 -0.1792 -7.9691 -5.1868 42 1 1.5771 -8.3094 -5.0547 43 1 0.1676 -5.6930 -5.5363 44 1 1.8054 -6.2001 -6.0317 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172065100.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:06 Heat of formation + Delta-G solvation = -100.022782 kcal Electronic energy + Delta-G solvation = -28733.588058 eV Core-core repulsion = 24777.375168 eV Total energy + Delta-G solvation = -3956.212890 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.08332 -40.51928 -38.12268 -37.44805 -36.83658 -34.69247 -33.58811 -33.28650 -32.80023 -32.45192 -29.32313 -27.59404 -26.95434 -24.57670 -24.21374 -22.99212 -22.71037 -22.37186 -19.79416 -18.73975 -18.55342 -18.16816 -17.63683 -17.36081 -17.18670 -17.01488 -16.79104 -16.36698 -16.31298 -15.83323 -15.45283 -14.83202 -14.68252 -14.37262 -14.22887 -14.07690 -13.95078 -13.77339 -13.65385 -13.24300 -13.09921 -13.06574 -12.99744 -12.90362 -12.72002 -12.67715 -12.41154 -12.39163 -12.21129 -11.97280 -11.81278 -11.76095 -11.41959 -10.75615 -10.65977 -10.57587 -10.36323 -9.95845 -9.70707 -8.17512 -6.27848 -0.70793 0.17341 0.46054 1.37080 1.40775 1.49864 1.80144 2.42280 2.60799 2.88426 2.96313 3.13135 3.21591 3.36924 3.41342 3.62375 3.81314 3.84746 3.92247 4.05029 4.09054 4.13705 4.23847 4.29304 4.30913 4.36792 4.48722 4.68132 4.72635 4.80784 4.83730 4.86979 4.89758 4.96405 4.99867 5.21524 5.22107 5.29846 5.31299 5.48982 5.69091 5.84719 5.90121 5.92285 6.14826 6.79025 7.21807 7.39191 8.90794 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008352 B = 0.005487 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3351.605209 B = 5101.907994 C = 7409.319184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.010 3.990 3 Si 0.956 3.044 4 H -0.279 1.279 5 H -0.272 1.272 6 H -0.266 1.266 7 C -0.541 4.541 8 H 0.050 0.950 9 C 0.278 3.722 10 N -0.984 5.984 11 C 0.162 3.838 12 C 0.093 3.907 13 C -0.181 4.181 14 C -0.066 4.066 15 C -0.164 4.164 16 C 0.081 3.919 17 N -0.505 5.505 18 S 2.597 3.403 19 O -0.979 6.979 20 O -0.985 6.985 21 C -0.612 4.612 22 C 0.073 3.927 23 H 0.099 0.901 24 C -0.134 4.134 25 C -0.146 4.146 26 C 0.032 3.968 27 O -0.416 6.416 28 H 0.266 0.734 29 H 0.008 0.992 30 H 0.033 0.967 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.153 0.847 34 H 0.176 0.824 35 H 0.170 0.830 36 H 0.166 0.834 37 H 0.169 0.831 38 H 0.135 0.865 39 H 0.120 0.880 40 H 0.083 0.917 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.072 0.928 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.468 -24.772 -0.383 24.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.189 4.189 3 Si 0.781 3.219 4 H -0.205 1.205 5 H -0.197 1.197 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.068 0.932 9 C 0.154 3.846 10 N -0.820 5.820 11 C 0.035 3.965 12 C -0.046 4.046 13 C -0.202 4.202 14 C -0.092 4.092 15 C -0.184 4.184 16 C -0.077 4.077 17 N -0.216 5.216 18 S 2.694 3.306 19 O -0.969 6.969 20 O -0.976 6.976 21 C -0.744 4.744 22 C 0.015 3.985 23 H 0.117 0.883 24 C -0.173 4.173 25 C -0.184 4.184 26 C -0.044 4.044 27 O -0.337 6.337 28 H 0.075 0.925 29 H 0.026 0.974 30 H 0.051 0.949 31 H 0.098 0.902 32 H 0.132 0.868 33 H 0.171 0.829 34 H 0.194 0.806 35 H 0.188 0.812 36 H 0.183 0.817 37 H 0.187 0.813 38 H 0.154 0.846 39 H 0.138 0.862 40 H 0.102 0.898 41 H 0.125 0.875 42 H 0.116 0.884 43 H 0.090 0.910 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.906 -23.213 -0.778 23.244 hybrid contribution -0.300 0.395 0.074 0.501 sum -1.206 -22.818 -0.704 22.861 Atomic orbital electron populations 1.70028 1.07212 1.27873 1.51536 1.25743 0.95823 1.02614 0.94713 0.85588 0.78937 0.79120 0.78264 1.20459 1.19723 1.19022 1.21789 0.93347 0.92461 1.50452 0.93210 1.18544 0.87052 0.82532 0.96435 1.57357 1.59547 1.44919 1.20173 1.20204 0.94277 0.96549 0.85450 1.21747 0.94274 0.93734 0.94859 1.22319 1.02369 0.92866 1.02639 1.22020 0.92262 1.01614 0.93316 1.22536 0.99769 0.96395 0.99703 1.23257 0.96805 0.91177 0.96415 1.67508 1.03803 1.41810 1.08430 1.05129 0.76238 0.76143 0.73041 1.93572 1.87006 1.55435 1.60932 1.93460 1.37510 1.81842 1.84758 1.30694 1.18554 1.18377 1.06743 1.22931 1.01909 0.90366 0.83336 0.88346 1.23310 0.98412 0.98632 0.96934 1.23176 1.05001 0.95471 0.94730 1.23471 0.99004 0.93444 0.88447 1.88591 1.84822 1.38002 1.22294 0.92534 0.97391 0.94919 0.90164 0.86838 0.82892 0.80622 0.81232 0.81706 0.81309 0.84621 0.86199 0.89817 0.87545 0.88402 0.91017 0.90145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.80 13.29 21.45 0.28 -57.51 16 2 C 0.01 0.60 5.46 84.65 0.46 1.06 16 3 Si 0.96 47.65 29.54 68.60 2.03 49.67 16 4 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 5 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 7 C -0.54 -33.06 9.38 25.60 0.24 -32.82 16 8 H 0.05 3.05 7.81 -2.92 -0.02 3.03 16 9 C 0.28 15.34 5.01 85.63 0.43 15.77 16 10 N -0.98 -44.04 2.68 -523.88 -1.41 -45.45 16 11 C 0.16 6.15 5.96 85.63 0.51 6.66 16 12 C 0.09 2.97 6.36 42.55 0.27 3.24 16 13 C -0.18 -4.07 8.20 22.36 0.18 -3.88 16 14 C -0.07 -1.05 10.18 22.47 0.23 -0.82 16 15 C -0.16 -2.78 10.11 22.36 0.23 -2.56 16 16 C 0.08 2.03 11.18 84.67 0.95 2.98 16 17 N -0.51 -17.45 10.25 -183.88 -1.88 -19.33 16 18 S 2.60 108.80 5.20 -56.49 -0.29 108.51 16 19 O -0.98 -52.35 16.42 -124.50 -2.04 -54.40 16 20 O -0.99 -40.80 16.53 -127.65 -2.11 -42.91 16 21 C -0.61 -17.62 5.93 71.98 0.43 -17.20 16 22 C 0.07 1.84 3.48 31.26 0.11 1.95 16 23 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 24 C -0.13 -2.08 6.57 32.05 0.21 -1.87 16 25 C -0.15 -1.96 7.02 31.86 0.22 -1.74 16 26 C 0.03 0.70 7.79 72.45 0.56 1.27 16 27 O -0.42 -13.50 10.24 -145.92 -1.49 -15.00 16 28 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 29 H 0.01 0.48 7.61 -2.39 -0.02 0.47 16 30 H 0.03 1.88 8.09 -2.39 -0.02 1.86 16 31 H 0.08 3.37 8.11 -2.39 -0.02 3.35 16 32 H 0.11 3.81 6.72 -2.39 -0.02 3.79 16 33 H 0.15 2.78 8.03 -2.91 -0.02 2.76 16 34 H 0.18 1.26 8.06 -2.91 -0.02 1.23 16 35 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 36 H 0.17 3.46 8.06 -2.91 -0.02 3.44 16 37 H 0.17 3.59 6.51 -2.39 -0.02 3.58 16 38 H 0.14 4.06 8.14 -2.39 -0.02 4.04 16 39 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.08 1.33 8.06 -2.39 -0.02 1.31 16 41 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -87.47 378.51 -0.90 -88.37 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.99 Total: 16.00 kcal Atomic # 6 Polarization: -32.99 SS G_CDS: 5.03 Total: -27.96 kcal Atomic # 7 Polarization: -119.29 SS G_CDS: -3.01 Total: -122.29 kcal Atomic # 8 Polarization: -106.66 SS G_CDS: -5.65 Total: -112.31 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.67 kcal Atomic # 16 Polarization: 108.80 SS G_CDS: -0.29 Total: 108.51 kcal Total: -87.47 -0.90 -88.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172065100.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.649 kcal (2) G-P(sol) polarization free energy of solvation -87.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds