Wall clock time and date at job start Tue Mar 31 2020 23:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38377 * 119.92926 * 2 1 4 4 C 1.38335 * 120.29385 * 179.97438 * 3 2 1 5 5 S 1.76204 * 119.92799 * 180.02562 * 4 3 2 6 6 N 1.65599 * 107.21713 * 90.00134 * 5 4 3 7 7 O 1.42096 * 106.40287 * 203.54028 * 5 4 3 8 8 O 1.42097 * 106.40269 * 336.46261 * 5 4 3 9 9 C 1.37977 * 120.14600 * 0.02562 * 4 3 2 10 10 C 1.39553 * 119.85090 * 359.97438 * 9 4 3 11 11 C 1.47852 * 120.14491 * 179.97438 * 10 9 4 12 12 O 1.21544 * 120.00092 * 186.19295 * 11 10 9 13 13 N 1.34777 * 119.99865 * 6.19955 * 11 10 9 14 14 C 1.46500 * 120.00055 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.46965 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.46875 * 179.97438 * 15 14 13 17 17 C 1.50702 * 109.47077 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99946 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00063 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00005 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99928 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47119 * 90.00363 * 21 19 17 23 23 H 1.48499 * 109.47019 * 210.00263 * 21 19 17 24 24 H 1.48497 * 109.46958 * 330.00088 * 21 19 17 25 25 C 1.37935 * 119.92671 * 179.72908 * 2 1 3 26 26 C 1.50704 * 120.07386 * 359.97438 * 25 2 1 27 27 H 1.09002 * 109.47428 * 89.99665 * 1 2 3 28 28 H 1.08995 * 109.47467 * 209.99763 * 1 2 3 29 29 H 1.08998 * 109.47054 * 329.99641 * 1 2 3 30 30 H 1.08002 * 119.84904 * 0.02562 * 3 2 1 31 31 H 0.97001 * 120.00116 * 150.00681 * 6 5 4 32 32 H 0.97001 * 120.00073 * 329.99443 * 6 5 4 33 33 H 1.08001 * 120.07178 * 179.97438 * 9 4 3 34 34 H 0.96999 * 119.99930 * 0.02562 * 13 11 10 35 35 H 1.09001 * 109.46733 * 299.99441 * 14 13 11 36 36 H 1.08997 * 109.47176 * 59.99494 * 14 13 11 37 37 H 1.09006 * 109.46887 * 299.99774 * 15 14 13 38 38 H 1.08997 * 109.47624 * 59.99723 * 15 14 13 39 39 H 1.09006 * 109.47243 * 299.99635 * 16 15 14 40 40 H 1.08994 * 109.47478 * 59.99911 * 16 15 14 41 41 H 0.96995 * 119.99464 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.46989 * 96.58944 * 26 25 2 43 43 H 1.08996 * 109.47170 * 216.59675 * 26 25 2 44 44 H 1.08999 * 109.46990 * 336.59002 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1992 0.0000 4 6 3.5807 1.2080 0.0005 5 16 4.4501 2.7407 0.0012 6 7 4.6914 3.1667 1.5832 7 8 5.7353 2.4733 -0.5428 8 8 3.5613 3.7064 -0.5433 9 6 4.2812 0.0193 0.0005 10 6 3.5911 -1.1936 0.0005 11 6 4.3352 -2.4713 0.0000 12 8 3.7368 -3.5230 -0.1136 13 7 5.6771 -2.4696 0.1255 14 6 6.4144 -3.7355 0.1255 15 6 7.9103 -3.4545 0.2813 16 6 8.6802 -4.7767 0.2819 17 6 10.1536 -4.4999 0.4347 18 1 10.5057 -3.4826 0.5230 19 6 11.0523 -5.5452 0.4618 20 7 12.3382 -5.3036 0.5957 21 14 10.4433 -7.3046 0.3099 22 1 10.4116 -7.6955 -1.1224 23 1 11.3578 -8.2106 1.0501 24 1 9.0764 -7.4063 0.8811 25 6 2.1952 -1.1954 0.0057 26 6 1.4416 -2.5005 0.0124 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6538 2.1325 0.0004 31 1 5.4702 3.6888 1.8315 32 1 4.0537 2.8942 2.2615 33 1 5.3612 0.0276 0.0005 34 1 6.1547 -1.6302 0.2166 35 1 6.0731 -4.3547 0.9552 36 1 6.2385 -4.2585 -0.8145 37 1 8.2519 -2.8351 -0.5481 38 1 8.0858 -2.9318 1.2215 39 1 8.3385 -5.3957 1.1115 40 1 8.5047 -5.2998 -0.6580 41 1 12.9702 -6.0391 0.6151 42 1 1.3617 -2.8792 -1.0066 43 1 1.9747 -3.2247 0.6284 44 1 0.4434 -2.3416 0.4203 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178527772.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:33 Heat of formation + Delta-G solvation = -100.393733 kcal Electronic energy + Delta-G solvation = -26788.934105 eV Core-core repulsion = 22832.705130 eV Total energy + Delta-G solvation = -3956.228976 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.82614 -38.87939 -37.52131 -36.19658 -35.77542 -34.27572 -33.60791 -33.26450 -32.69676 -31.42540 -28.57816 -27.24475 -27.04261 -24.22999 -22.57743 -22.20766 -20.79200 -20.06101 -19.73338 -18.54505 -17.78335 -17.37161 -16.93463 -16.56694 -16.31389 -15.92213 -15.66592 -15.31546 -15.24895 -14.76552 -14.31085 -14.03958 -13.97772 -13.51698 -13.17508 -12.94334 -12.74540 -12.66918 -12.50396 -12.49862 -12.44346 -12.39095 -12.15912 -12.11626 -12.03396 -11.91948 -11.19346 -11.10829 -10.92084 -10.85755 -10.20254 -9.98040 -9.80381 -9.63913 -9.58930 -9.29854 -9.24599 -8.95096 -8.56875 -6.07382 -4.06292 -0.04342 0.23591 0.49259 2.35832 2.77843 3.08998 3.19733 3.29949 3.37532 3.39148 3.41040 3.93559 4.21159 4.31535 4.39019 4.42927 4.66137 4.70990 4.73811 5.05331 5.13203 5.19886 5.26449 5.32453 5.41192 5.49733 5.50166 5.55487 5.56575 5.59342 5.62495 5.89047 5.95435 6.05830 6.22991 6.34352 6.39579 6.60088 6.61667 6.74492 7.19628 7.33092 7.45808 7.74369 8.11511 8.49112 8.96706 9.54610 11.05872 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012951 B = 0.002578 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.424317 B =10858.131046 C =12806.125347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.118 4.118 3 C 0.001 3.999 4 C -0.688 4.688 5 S 2.704 3.296 6 N -1.248 6.248 7 O -0.956 6.956 8 O -0.961 6.961 9 C 0.014 3.986 10 C -0.151 4.151 11 C 0.553 3.447 12 O -0.532 6.532 13 N -0.719 5.719 14 C 0.114 3.886 15 C -0.116 4.116 16 C -0.010 4.010 17 C -0.523 4.523 18 H 0.072 0.928 19 C 0.067 3.933 20 N -0.902 5.902 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.265 1.265 25 C 0.033 3.967 26 C -0.135 4.135 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.146 0.854 31 H 0.422 0.578 32 H 0.417 0.583 33 H 0.147 0.853 34 H 0.400 0.600 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.019 0.981 40 H 0.015 0.985 41 H 0.263 0.737 42 H 0.086 0.914 43 H 0.103 0.897 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.709 16.687 2.603 30.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.119 4.119 3 C -0.018 4.018 4 C -0.775 4.775 5 S 2.792 3.208 6 N -0.922 5.922 7 O -0.946 6.946 8 O -0.950 6.950 9 C -0.006 4.006 10 C -0.155 4.155 11 C 0.340 3.660 12 O -0.411 6.411 13 N -0.370 5.370 14 C -0.008 4.008 15 C -0.154 4.154 16 C -0.048 4.048 17 C -0.561 4.561 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.541 5.541 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.189 1.189 25 C 0.032 3.968 26 C -0.190 4.190 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.164 0.836 31 H 0.253 0.747 32 H 0.244 0.756 33 H 0.164 0.836 34 H 0.235 0.765 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.037 0.963 40 H 0.033 0.967 41 H 0.073 0.927 42 H 0.104 0.896 43 H 0.121 0.879 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -25.675 16.240 1.593 30.422 hybrid contribution -0.024 -1.001 0.617 1.176 sum -25.699 15.239 2.210 29.959 Atomic orbital electron populations 1.20909 0.89857 1.03561 1.03154 1.19889 0.96972 0.92054 1.02951 1.20998 0.91745 0.98967 0.90129 1.30589 1.05959 1.19586 1.21399 1.01547 0.73559 0.73341 0.72395 1.53119 1.38275 1.72158 1.28652 1.93637 1.39440 1.85094 1.76406 1.93614 1.67032 1.58081 1.76275 1.21086 1.00218 0.90416 0.88873 1.20008 0.93959 0.93478 1.08020 1.18087 0.82417 0.88268 0.77255 1.90728 1.67821 1.32679 1.49844 1.46155 1.06337 1.11256 1.73236 1.21728 0.92731 0.84176 1.02188 1.21738 0.90527 1.01245 1.01857 1.19496 0.96195 0.92479 0.96645 1.21095 0.89209 0.95305 1.50454 0.90943 1.25031 0.94750 0.99204 0.94488 1.69914 1.01472 1.32174 1.50564 0.86774 0.79148 0.84822 0.78523 1.20243 1.21376 1.18934 1.20268 0.92160 0.96166 0.88230 1.21337 0.99296 0.93842 1.04533 0.90523 0.90418 0.90998 0.83615 0.74691 0.75610 0.83578 0.76509 0.91453 0.91421 0.91889 0.91971 0.96310 0.96718 0.92680 0.89603 0.87909 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.62 9.59 36.01 0.35 -0.28 16 2 C -0.12 -0.95 5.87 -104.68 -0.61 -1.57 16 3 C 0.00 0.01 9.17 -39.49 -0.36 -0.35 16 4 C -0.69 -5.85 5.97 -39.64 -0.24 -6.09 16 5 S 2.70 21.92 6.28 -107.50 -0.67 21.24 16 6 N -1.25 -5.34 9.52 60.35 0.57 -4.77 16 7 O -0.96 -11.17 17.28 -57.17 -0.99 -12.15 16 8 O -0.96 -10.32 17.27 -57.17 -0.99 -11.31 16 9 C 0.01 0.14 9.00 -39.19 -0.35 -0.21 16 10 C -0.15 -1.72 5.87 -104.97 -0.62 -2.34 16 11 C 0.55 7.69 7.70 -12.33 -0.09 7.59 16 12 O -0.53 -8.66 13.36 5.33 0.07 -8.59 16 13 N -0.72 -9.73 5.51 -61.25 -0.34 -10.07 16 14 C 0.11 1.82 5.67 -4.04 -0.02 1.80 16 15 C -0.12 -2.12 5.27 -26.73 -0.14 -2.26 16 16 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 17 C -0.52 -14.65 9.66 -34.44 -0.33 -14.98 16 18 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 19 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 20 N -0.90 -27.69 13.96 55.43 0.77 -26.91 16 21 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 25 C 0.03 0.33 5.91 -104.22 -0.62 -0.28 16 26 C -0.13 -1.27 8.40 36.01 0.30 -0.97 16 27 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.36 5.86 -51.93 -0.30 0.05 16 29 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16 30 H 0.15 0.82 7.61 -52.49 -0.40 0.42 16 31 H 0.42 1.29 8.96 -34.47 -0.31 0.98 16 32 H 0.42 0.82 8.96 -34.47 -0.31 0.52 16 33 H 0.15 1.28 6.01 -52.49 -0.32 0.97 16 34 H 0.40 4.51 6.55 -40.82 -0.27 4.25 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 40 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.10 1.20 5.88 -51.93 -0.31 0.89 16 44 H 0.07 0.46 5.70 -51.93 -0.30 0.17 16 LS Contribution 372.54 15.07 5.61 5.61 Total: -1.00 -37.63 372.54 -9.39 -47.02 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -5.81 Total: 1.46 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -2.95 Total: -18.47 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 1.01 Total: -41.75 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -1.90 Total: -32.05 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Atomic # 16 Polarization: 21.92 SS G_CDS: -0.67 Total: 21.24 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.63 -9.39 -47.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178527772.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.377 kcal (2) G-P(sol) polarization free energy of solvation -37.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds