Wall clock time and date at job start Tue Mar 31 2020 23:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38377 * 119.92926 * 2 1 4 4 C 1.38335 * 120.29385 * 179.97438 * 3 2 1 5 5 S 1.76204 * 119.92799 * 180.02562 * 4 3 2 6 6 N 1.65599 * 107.21713 * 90.00134 * 5 4 3 7 7 O 1.42096 * 106.40287 * 203.54028 * 5 4 3 8 8 O 1.42097 * 106.40269 * 336.46261 * 5 4 3 9 9 C 1.37977 * 120.14600 * 0.02562 * 4 3 2 10 10 C 1.39553 * 119.85090 * 359.97438 * 9 4 3 11 11 C 1.47852 * 120.14491 * 179.97438 * 10 9 4 12 12 O 1.21544 * 120.00092 * 186.19295 * 11 10 9 13 13 N 1.34777 * 119.99865 * 6.19955 * 11 10 9 14 14 C 1.46500 * 120.00055 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.46965 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.46875 * 179.97438 * 15 14 13 17 17 C 1.50702 * 109.47077 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99946 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00063 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00005 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99928 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47119 * 90.00363 * 21 19 17 23 23 H 1.48499 * 109.47019 * 210.00263 * 21 19 17 24 24 H 1.48497 * 109.46958 * 330.00088 * 21 19 17 25 25 C 1.37935 * 119.92671 * 179.72908 * 2 1 3 26 26 C 1.50704 * 120.07386 * 359.97438 * 25 2 1 27 27 H 1.09002 * 109.47428 * 89.99665 * 1 2 3 28 28 H 1.08995 * 109.47467 * 209.99763 * 1 2 3 29 29 H 1.08998 * 109.47054 * 329.99641 * 1 2 3 30 30 H 1.08002 * 119.84904 * 0.02562 * 3 2 1 31 31 H 0.97001 * 120.00116 * 150.00681 * 6 5 4 32 32 H 0.97001 * 120.00073 * 329.99443 * 6 5 4 33 33 H 1.08001 * 120.07178 * 179.97438 * 9 4 3 34 34 H 0.96999 * 119.99930 * 0.02562 * 13 11 10 35 35 H 1.09001 * 109.46733 * 299.99441 * 14 13 11 36 36 H 1.08997 * 109.47176 * 59.99494 * 14 13 11 37 37 H 1.09006 * 109.46887 * 299.99774 * 15 14 13 38 38 H 1.08997 * 109.47624 * 59.99723 * 15 14 13 39 39 H 1.09006 * 109.47243 * 299.99635 * 16 15 14 40 40 H 1.08994 * 109.47478 * 59.99911 * 16 15 14 41 41 H 0.96995 * 119.99464 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.46989 * 96.58944 * 26 25 2 43 43 H 1.08996 * 109.47170 * 216.59675 * 26 25 2 44 44 H 1.08999 * 109.46990 * 336.59002 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1992 0.0000 4 6 3.5807 1.2080 0.0005 5 16 4.4501 2.7407 0.0012 6 7 4.6914 3.1667 1.5832 7 8 5.7353 2.4733 -0.5428 8 8 3.5613 3.7064 -0.5433 9 6 4.2812 0.0193 0.0005 10 6 3.5911 -1.1936 0.0005 11 6 4.3352 -2.4713 0.0000 12 8 3.7368 -3.5230 -0.1136 13 7 5.6771 -2.4696 0.1255 14 6 6.4144 -3.7355 0.1255 15 6 7.9103 -3.4545 0.2813 16 6 8.6802 -4.7767 0.2819 17 6 10.1536 -4.4999 0.4347 18 1 10.5057 -3.4826 0.5230 19 6 11.0523 -5.5452 0.4618 20 7 12.3382 -5.3036 0.5957 21 14 10.4433 -7.3046 0.3099 22 1 10.4116 -7.6955 -1.1224 23 1 11.3578 -8.2106 1.0501 24 1 9.0764 -7.4063 0.8811 25 6 2.1952 -1.1954 0.0057 26 6 1.4416 -2.5005 0.0124 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6538 2.1325 0.0004 31 1 5.4702 3.6888 1.8315 32 1 4.0537 2.8942 2.2615 33 1 5.3612 0.0276 0.0005 34 1 6.1547 -1.6302 0.2166 35 1 6.0731 -4.3547 0.9552 36 1 6.2385 -4.2585 -0.8145 37 1 8.2519 -2.8351 -0.5481 38 1 8.0858 -2.9318 1.2215 39 1 8.3385 -5.3957 1.1115 40 1 8.5047 -5.2998 -0.6580 41 1 12.9702 -6.0391 0.6151 42 1 1.3617 -2.8792 -1.0066 43 1 1.9747 -3.2247 0.6284 44 1 0.4434 -2.3416 0.4203 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178527772.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:32 Heat of formation + Delta-G solvation = -130.297092 kcal Electronic energy + Delta-G solvation = -26790.230812 eV Core-core repulsion = 22832.705130 eV Total energy + Delta-G solvation = -3957.525683 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.69654 -39.81366 -38.29870 -37.13280 -36.97025 -35.43196 -34.65325 -34.05921 -33.63300 -33.01466 -29.62900 -28.41911 -27.82399 -25.44277 -23.92020 -22.95525 -22.23597 -21.22631 -20.41839 -19.35237 -18.87675 -18.37466 -18.13977 -17.41103 -17.14101 -16.89969 -16.74217 -16.41672 -16.01259 -15.97879 -15.80064 -15.04126 -14.95902 -14.78319 -14.34706 -13.85401 -13.77966 -13.71639 -13.49150 -13.32711 -13.25233 -13.21764 -13.18215 -13.16156 -12.90885 -12.74264 -12.68655 -12.65735 -11.90990 -11.82285 -11.77197 -11.61195 -11.34379 -11.32822 -10.78670 -10.76554 -10.47184 -10.07243 -9.93987 -8.29590 -6.33817 -0.70043 -0.49768 -0.23556 1.37002 1.38197 1.50111 1.52693 2.02665 2.14715 2.36117 2.39505 2.71199 3.06114 3.23175 3.49863 3.61200 3.69371 3.94896 4.04047 4.08392 4.13922 4.17495 4.46383 4.47994 4.58028 4.63618 4.69268 4.73801 4.83352 4.86262 4.87181 4.98306 5.01585 5.13574 5.20245 5.26898 5.34647 5.41630 5.46789 5.54069 5.64431 5.65974 6.27090 6.34575 6.39965 6.74456 7.05204 7.30995 8.86980 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012951 B = 0.002578 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.424317 B =10858.131046 C =12806.125347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.114 4.114 3 C 0.005 3.995 4 C -0.685 4.685 5 S 2.730 3.270 6 N -1.232 6.232 7 O -0.994 6.994 8 O -0.985 6.985 9 C 0.006 3.994 10 C -0.169 4.169 11 C 0.551 3.449 12 O -0.560 6.560 13 N -0.716 5.716 14 C 0.128 3.872 15 C -0.104 4.104 16 C -0.011 4.011 17 C -0.532 4.532 18 H 0.036 0.964 19 C 0.004 3.996 20 N -0.951 5.951 21 Si 0.949 3.051 22 H -0.268 1.268 23 H -0.285 1.285 24 H -0.246 1.246 25 C 0.020 3.980 26 C -0.130 4.130 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.172 0.828 31 H 0.431 0.569 32 H 0.430 0.570 33 H 0.151 0.849 34 H 0.410 0.590 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.024 0.976 40 H 0.020 0.980 41 H 0.266 0.734 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.584 17.252 3.024 33.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.114 4.114 3 C -0.014 4.014 4 C -0.772 4.772 5 S 2.817 3.183 6 N -0.911 5.911 7 O -0.984 6.984 8 O -0.974 6.974 9 C -0.014 4.014 10 C -0.173 4.173 11 C 0.340 3.660 12 O -0.441 6.441 13 N -0.367 5.367 14 C 0.004 3.996 15 C -0.142 4.142 16 C -0.049 4.049 17 C -0.570 4.570 18 H 0.054 0.946 19 C -0.193 4.193 20 N -0.592 5.592 21 Si 0.772 3.228 22 H -0.193 1.193 23 H -0.210 1.210 24 H -0.169 1.169 25 C 0.019 3.981 26 C -0.186 4.186 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.111 0.889 30 H 0.189 0.811 31 H 0.264 0.736 32 H 0.260 0.740 33 H 0.169 0.831 34 H 0.247 0.753 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.042 0.958 40 H 0.039 0.961 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -28.564 16.841 2.028 33.221 hybrid contribution 0.858 -1.036 0.522 1.442 sum -27.706 15.806 2.550 31.999 Atomic orbital electron populations 1.21024 0.87562 1.04989 1.04063 1.20205 0.98566 0.91184 1.01493 1.21390 0.91466 1.00023 0.88566 1.30590 1.06491 1.18923 1.21194 1.00577 0.72282 0.72650 0.72783 1.52731 1.39021 1.71857 1.27519 1.93590 1.41304 1.85541 1.77931 1.93588 1.67489 1.58833 1.77511 1.21158 1.00627 0.90438 0.89133 1.19867 0.94565 0.92539 1.10301 1.18478 0.82213 0.88976 0.76339 1.90717 1.68307 1.33936 1.51130 1.46008 1.06487 1.10898 1.73354 1.21375 0.91150 0.85184 1.01868 1.21521 0.91686 0.98885 1.02130 1.19453 0.93523 0.94991 0.96888 1.21473 0.92068 0.93798 1.49655 0.94561 1.26006 0.94782 1.04277 0.94235 1.70066 1.03024 1.33768 1.52318 0.85675 0.79405 0.78698 0.78981 1.19328 1.21047 1.16896 1.20454 0.91775 0.97225 0.88685 1.21265 1.00438 0.93099 1.03757 0.89728 0.89709 0.88931 0.81052 0.73624 0.73952 0.83148 0.75268 0.91626 0.91919 0.91935 0.91595 0.95804 0.96149 0.92503 0.90345 0.90328 0.88562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 9.59 71.24 0.68 -0.17 16 2 C -0.11 -1.55 5.87 -19.90 -0.12 -1.66 16 3 C 0.00 0.06 9.17 22.33 0.20 0.26 16 4 C -0.68 -10.47 5.97 22.23 0.13 -10.33 16 5 S 2.73 40.36 6.28 -56.49 -0.35 40.00 16 6 N -1.23 -8.05 9.52 37.02 0.35 -7.70 16 7 O -0.99 -22.65 17.28 -128.00 -2.21 -24.87 16 8 O -0.99 -19.45 17.27 -128.00 -2.21 -21.66 16 9 C 0.01 0.12 9.00 22.53 0.20 0.32 16 10 C -0.17 -3.75 5.87 -20.09 -0.12 -3.87 16 11 C 0.55 15.27 7.70 86.79 0.67 15.94 16 12 O -0.56 -18.38 13.36 -3.85 -0.05 -18.43 16 13 N -0.72 -19.11 5.51 -465.98 -2.57 -21.68 16 14 C 0.13 4.00 5.67 86.38 0.49 4.49 16 15 C -0.10 -3.79 5.27 30.59 0.16 -3.63 16 16 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 17 C -0.53 -30.33 9.66 25.60 0.25 -30.09 16 18 H 0.04 2.26 7.99 -2.91 -0.02 2.23 16 19 C 0.00 0.22 5.47 84.65 0.46 0.68 16 20 N -0.95 -59.72 13.96 21.45 0.30 -59.42 16 21 Si 0.95 44.30 27.47 68.60 1.88 46.19 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 23 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 24 H -0.25 -10.61 6.54 99.48 0.65 -9.96 16 25 C 0.02 0.38 5.91 -19.61 -0.12 0.26 16 26 C -0.13 -2.35 8.40 71.24 0.60 -1.75 16 27 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.08 0.50 5.86 -2.39 -0.01 0.48 16 29 H 0.09 0.31 8.08 -2.39 -0.02 0.29 16 30 H 0.17 1.29 7.61 -2.91 -0.02 1.27 16 31 H 0.43 1.82 8.96 -96.74 -0.87 0.95 16 32 H 0.43 0.60 8.96 -96.74 -0.87 -0.27 16 33 H 0.15 2.58 6.01 -2.91 -0.02 2.56 16 34 H 0.41 9.09 6.55 -92.71 -0.61 8.48 16 35 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 38 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.02 1.06 7.20 -2.38 -0.02 1.04 16 40 H 0.02 0.90 7.57 -2.39 -0.02 0.88 16 41 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 42 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.08 1.84 5.88 -2.39 -0.01 1.82 16 44 H 0.10 1.11 5.70 -2.39 -0.01 1.10 16 Total: -1.00 -82.31 372.54 -2.56 -84.87 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -1.32 Total: 12.61 kcal Atomic # 6 Polarization: -33.53 SS G_CDS: 3.62 Total: -29.91 kcal Atomic # 7 Polarization: -86.88 SS G_CDS: -1.91 Total: -88.80 kcal Atomic # 8 Polarization: -60.49 SS G_CDS: -4.47 Total: -64.97 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.88 Total: 46.19 kcal Atomic # 16 Polarization: 40.36 SS G_CDS: -0.35 Total: 40.00 kcal Total: -82.31 -2.56 -84.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178527772.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.432 kcal (2) G-P(sol) polarization free energy of solvation -82.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds