Wall clock time and date at job start Tue Mar 31 2020 23:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 S 1.81409 * 109.46814 * 179.97438 * 10 9 7 12 12 O 1.42096 * 110.54119 * 291.62426 * 11 10 9 13 13 O 1.42097 * 110.54031 * 68.37593 * 11 10 9 14 14 N 1.65601 * 104.44942 * 180.02562 * 11 10 9 15 15 C 1.47016 * 125.64959 * 90.02261 * 14 11 10 16 16 C 1.54325 * 107.27151 * 181.02310 * 15 14 11 17 17 C 1.55147 * 102.94321 * 22.19608 * 16 15 14 18 18 H 1.09000 * 111.00803 * 82.60844 * 17 16 15 19 19 O 1.42901 * 111.00587 * 206.42315 * 17 16 15 20 20 C 1.42894 * 114.00101 * 268.54517 * 19 17 16 21 21 C 1.50699 * 109.47435 * 179.97438 * 20 19 17 22 22 C 1.38226 * 119.61412 * 359.73273 * 21 20 19 23 23 C 1.38631 * 119.16030 * 179.71033 * 22 21 20 24 24 C 1.38678 * 118.41796 * 0.54895 * 23 22 21 25 25 C 1.38184 * 119.16197 * 359.73020 * 24 23 22 26 26 N 1.31849 * 119.62016 * 179.97438 * 21 20 19 27 27 C 1.47427 * 125.64602 * 269.71924 * 14 11 10 28 28 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 30 30 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 31 31 H 1.09000 * 109.47486 * 299.99934 * 10 9 7 32 32 H 1.09001 * 109.47362 * 60.00657 * 10 9 7 33 33 H 1.09004 * 109.88602 * 300.44211 * 15 14 11 34 34 H 1.09004 * 109.88376 * 61.45558 * 15 14 11 35 35 H 1.09001 * 110.71907 * 140.56206 * 16 15 14 36 36 H 1.09002 * 110.71893 * 263.65171 * 16 15 14 37 37 H 1.09006 * 109.47306 * 300.00114 * 20 19 17 38 38 H 1.09003 * 109.47110 * 59.99443 * 20 19 17 39 39 H 1.08002 * 120.42363 * 359.97438 * 22 21 20 40 40 H 1.08002 * 120.79440 * 180.29788 * 23 22 21 41 41 H 1.08002 * 120.41617 * 179.75888 * 24 23 22 42 42 H 1.08000 * 119.61143 * 180.02562 * 25 24 23 43 43 H 1.09000 * 110.36568 * 274.74162 * 27 14 11 44 44 H 1.08998 * 110.36971 * 37.06838 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 16 1.3382 -5.2331 -0.0034 12 8 0.6647 -5.4204 1.2337 13 8 0.6639 -5.4189 -1.2402 14 7 2.5204 -6.3927 -0.0038 15 6 3.1317 -6.9936 1.1907 16 6 4.1956 -7.9999 0.7039 17 6 4.5197 -7.4977 -0.7278 18 1 5.2438 -6.6834 -0.7017 19 8 4.9857 -8.5675 -1.5527 20 6 6.4054 -8.7295 -1.5474 21 6 6.7832 -9.8794 -2.4451 22 6 5.7942 -10.5839 -3.1055 23 6 6.1527 -11.6362 -3.9338 24 6 7.4979 -11.9493 -4.0583 25 6 8.4301 -11.2037 -3.3622 26 7 8.0529 -10.2049 -2.5878 27 6 3.1297 -6.9981 -1.2020 28 1 -0.4849 0.8400 0.0004 29 1 0.6240 -2.5575 0.8880 30 1 0.6247 -2.5562 -0.8920 31 1 2.8720 -3.6035 -0.8927 32 1 2.8719 -3.6051 0.8873 33 1 3.6034 -6.2189 1.7953 34 1 2.3710 -7.5093 1.7768 35 1 5.0823 -7.9599 1.3366 36 1 3.7874 -9.0103 0.6780 37 1 6.8768 -7.8156 -1.9092 38 1 6.7439 -8.9353 -0.5319 39 1 4.7555 -10.3153 -2.9812 40 1 5.4020 -12.2014 -4.4661 41 1 7.8131 -12.7653 -4.6918 42 1 9.4797 -11.4409 -3.4542 43 1 2.5242 -7.8329 -1.5548 44 1 3.2432 -6.2517 -1.9882 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269296721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:42 Heat of formation + Delta-G solvation = -79.715840 kcal Electronic energy + Delta-G solvation = -26588.268305 eV Core-core repulsion = 22632.935990 eV Total energy + Delta-G solvation = -3955.332315 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.59295 -39.27956 -36.90230 -36.63374 -35.46644 -33.90763 -33.00345 -32.25832 -31.17670 -30.32378 -28.90592 -26.83562 -25.61797 -23.89107 -22.75432 -22.35012 -21.46386 -21.39933 -18.70416 -17.74016 -17.66024 -17.14516 -16.64474 -16.34254 -15.82727 -15.79165 -15.57711 -15.41353 -14.85341 -14.62108 -14.49053 -14.12996 -13.76179 -13.61134 -13.42549 -13.27628 -13.24187 -12.54716 -12.44307 -12.13206 -11.88214 -11.80971 -11.77459 -11.63413 -11.54333 -11.40517 -11.09601 -10.98352 -10.90942 -10.44389 -10.39886 -10.28496 -10.00645 -9.83192 -9.79240 -9.36057 -9.26992 -8.80339 -8.51876 -6.13921 -4.19624 0.67445 0.71944 0.91378 2.75351 3.15467 3.25027 3.31315 3.33897 3.39980 4.07061 4.24399 4.26233 4.32873 4.38419 4.42188 4.49335 4.67867 4.72480 4.73283 4.87370 4.92318 5.04274 5.07069 5.20068 5.21308 5.28169 5.36895 5.44782 5.52058 5.59872 5.63433 5.67058 5.70433 5.78535 5.84100 5.87644 6.08030 6.30900 6.38380 6.46266 6.81107 7.27956 7.33943 7.57165 7.78886 8.15619 8.83671 9.45148 10.97040 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016935 B = 0.002156 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.985547 B =12983.278056 C =13831.875737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.901 3.099 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.061 0.939 9 C 0.027 3.973 10 C -0.588 4.588 11 S 2.606 3.394 12 O -0.959 6.959 13 O -0.959 6.959 14 N -1.018 6.018 15 C 0.122 3.878 16 C -0.152 4.152 17 C 0.078 3.922 18 H 0.085 0.915 19 O -0.372 6.372 20 C 0.114 3.886 21 C 0.125 3.875 22 C -0.147 4.147 23 C -0.077 4.077 24 C -0.177 4.177 25 C 0.100 3.900 26 N -0.484 5.484 27 C 0.131 3.869 28 H 0.265 0.735 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.147 0.853 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.157 0.843 43 H 0.079 0.921 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.634 -23.653 -4.323 28.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.079 0.921 9 C -0.012 4.012 10 C -0.722 4.722 11 S 2.706 3.294 12 O -0.950 6.950 13 O -0.950 6.950 14 N -0.855 5.855 15 C -0.004 4.004 16 C -0.191 4.191 17 C 0.019 3.981 18 H 0.103 0.897 19 O -0.290 6.290 20 C 0.037 3.963 21 C -0.012 4.012 22 C -0.166 4.166 23 C -0.103 4.103 24 C -0.197 4.197 25 C -0.057 4.057 26 N -0.195 5.195 27 C 0.005 3.995 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.165 0.835 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.174 0.826 43 H 0.098 0.902 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 14.959 -23.337 -3.964 28.002 hybrid contribution 0.641 0.839 -0.348 1.111 sum 15.600 -22.499 -4.312 27.716 Atomic orbital electron populations 1.69953 1.06104 1.27219 1.49504 1.25077 0.94992 0.99564 0.94908 0.86460 0.79684 0.82832 0.78239 1.20454 1.21002 1.19784 1.20991 0.93041 0.89724 1.52203 0.92054 1.18977 0.92722 0.90550 0.98920 1.30489 1.13738 1.17894 1.10031 1.05365 0.74085 0.75871 0.74078 1.93539 1.70818 1.85185 1.45428 1.93546 1.70801 1.85197 1.45409 1.58920 1.58681 1.55894 1.12042 1.21593 0.95428 0.95980 0.87367 1.23145 0.99188 1.00217 0.96530 1.23384 0.96051 0.89000 0.89680 0.89698 1.87785 1.20553 1.52638 1.67991 1.20951 0.81770 0.95484 0.98099 1.20837 0.88919 0.95695 0.95746 1.22012 1.01995 0.95782 0.96854 1.21682 0.96434 0.95944 0.96225 1.22175 0.94166 1.01693 1.01662 1.22672 1.00208 0.90674 0.92127 1.67221 1.18384 1.16200 1.17658 1.21760 0.91741 0.98735 0.87262 0.92509 0.94805 0.94798 0.86250 0.86250 0.91295 0.90711 0.90008 0.89589 0.90570 0.90713 0.83508 0.84666 0.84764 0.82562 0.90240 0.89796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.52 -14.28 9.11 -34.44 -0.31 -14.60 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 10 C -0.59 -11.06 6.12 37.16 0.23 -10.84 16 11 S 2.61 46.58 5.65 -107.50 -0.61 45.98 16 12 O -0.96 -19.77 17.60 -57.54 -1.01 -20.78 16 13 O -0.96 -19.81 17.60 -57.54 -1.01 -20.82 16 14 N -1.02 -13.59 3.62 -111.29 -0.40 -13.99 16 15 C 0.12 1.31 6.89 -3.07 -0.02 1.29 16 16 C -0.15 -1.26 6.68 -24.90 -0.17 -1.42 16 17 C 0.08 0.70 3.50 -24.47 -0.09 0.62 16 18 H 0.09 0.66 7.90 -51.93 -0.41 0.25 16 19 O -0.37 -3.37 8.60 -35.23 -0.30 -3.68 16 20 C 0.11 0.94 6.36 36.01 0.23 1.17 16 21 C 0.13 1.18 6.78 -82.59 -0.56 0.62 16 22 C -0.15 -1.25 9.41 -39.44 -0.37 -1.62 16 23 C -0.08 -0.53 10.18 -39.27 -0.40 -0.93 16 24 C -0.18 -1.11 10.11 -39.44 -0.40 -1.51 16 25 C 0.10 0.75 11.18 -17.55 -0.20 0.55 16 26 N -0.48 -4.73 10.27 -9.47 -0.10 -4.83 16 27 C 0.13 1.49 6.63 -2.41 -0.02 1.47 16 28 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.12 2.01 8.14 -51.92 -0.42 1.59 16 32 H 0.12 2.01 8.14 -51.92 -0.42 1.59 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.59 8.11 -51.93 -0.42 0.17 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.15 1.21 7.00 -52.49 -0.37 0.84 16 40 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 41 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 42 H 0.16 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 383.69 15.07 5.78 5.78 Total: -1.00 -35.86 383.69 -10.91 -46.76 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -6.66 Total: -1.76 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: -2.31 Total: -23.12 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: 0.24 Total: -44.46 kcal Atomic # 8 Polarization: -42.95 SS G_CDS: -2.33 Total: -45.28 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 46.58 SS G_CDS: -0.61 Total: 45.98 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.86 -10.91 -46.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269296721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.954 kcal (2) G-P(sol) polarization free energy of solvation -35.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds