Wall clock time and date at job start Tue Mar 31 2020 23:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 S 1.81409 * 109.46814 * 179.97438 * 10 9 7 12 12 O 1.42096 * 110.54119 * 291.62426 * 11 10 9 13 13 O 1.42097 * 110.54031 * 68.37593 * 11 10 9 14 14 N 1.65601 * 104.44942 * 180.02562 * 11 10 9 15 15 C 1.47016 * 125.64959 * 90.02261 * 14 11 10 16 16 C 1.54325 * 107.27151 * 181.02310 * 15 14 11 17 17 C 1.55147 * 102.94321 * 22.19608 * 16 15 14 18 18 H 1.09000 * 111.00803 * 82.60844 * 17 16 15 19 19 O 1.42901 * 111.00587 * 206.42315 * 17 16 15 20 20 C 1.42894 * 114.00101 * 268.54517 * 19 17 16 21 21 C 1.50699 * 109.47435 * 179.97438 * 20 19 17 22 22 C 1.38226 * 119.61412 * 359.73273 * 21 20 19 23 23 C 1.38631 * 119.16030 * 179.71033 * 22 21 20 24 24 C 1.38678 * 118.41796 * 0.54895 * 23 22 21 25 25 C 1.38184 * 119.16197 * 359.73020 * 24 23 22 26 26 N 1.31849 * 119.62016 * 179.97438 * 21 20 19 27 27 C 1.47427 * 125.64602 * 269.71924 * 14 11 10 28 28 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 30 30 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 31 31 H 1.09000 * 109.47486 * 299.99934 * 10 9 7 32 32 H 1.09001 * 109.47362 * 60.00657 * 10 9 7 33 33 H 1.09004 * 109.88602 * 300.44211 * 15 14 11 34 34 H 1.09004 * 109.88376 * 61.45558 * 15 14 11 35 35 H 1.09001 * 110.71907 * 140.56206 * 16 15 14 36 36 H 1.09002 * 110.71893 * 263.65171 * 16 15 14 37 37 H 1.09006 * 109.47306 * 300.00114 * 20 19 17 38 38 H 1.09003 * 109.47110 * 59.99443 * 20 19 17 39 39 H 1.08002 * 120.42363 * 359.97438 * 22 21 20 40 40 H 1.08002 * 120.79440 * 180.29788 * 23 22 21 41 41 H 1.08002 * 120.41617 * 179.75888 * 24 23 22 42 42 H 1.08000 * 119.61143 * 180.02562 * 25 24 23 43 43 H 1.09000 * 110.36568 * 274.74162 * 27 14 11 44 44 H 1.08998 * 110.36971 * 37.06838 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 16 1.3382 -5.2331 -0.0034 12 8 0.6647 -5.4204 1.2337 13 8 0.6639 -5.4189 -1.2402 14 7 2.5204 -6.3927 -0.0038 15 6 3.1317 -6.9936 1.1907 16 6 4.1956 -7.9999 0.7039 17 6 4.5197 -7.4977 -0.7278 18 1 5.2438 -6.6834 -0.7017 19 8 4.9857 -8.5675 -1.5527 20 6 6.4054 -8.7295 -1.5474 21 6 6.7832 -9.8794 -2.4451 22 6 5.7942 -10.5839 -3.1055 23 6 6.1527 -11.6362 -3.9338 24 6 7.4979 -11.9493 -4.0583 25 6 8.4301 -11.2037 -3.3622 26 7 8.0529 -10.2049 -2.5878 27 6 3.1297 -6.9981 -1.2020 28 1 -0.4849 0.8400 0.0004 29 1 0.6240 -2.5575 0.8880 30 1 0.6247 -2.5562 -0.8920 31 1 2.8720 -3.6035 -0.8927 32 1 2.8719 -3.6051 0.8873 33 1 3.6034 -6.2189 1.7953 34 1 2.3710 -7.5093 1.7768 35 1 5.0823 -7.9599 1.3366 36 1 3.7874 -9.0103 0.6780 37 1 6.8768 -7.8156 -1.9092 38 1 6.7439 -8.9353 -0.5319 39 1 4.7555 -10.3153 -2.9812 40 1 5.4020 -12.2014 -4.4661 41 1 7.8131 -12.7653 -4.6918 42 1 9.4797 -11.4409 -3.4542 43 1 2.5242 -7.8329 -1.5548 44 1 3.2432 -6.2517 -1.9882 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269296721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:41 Heat of formation + Delta-G solvation = -105.362011 kcal Electronic energy + Delta-G solvation = -26589.380407 eV Core-core repulsion = 22632.935990 eV Total energy + Delta-G solvation = -3956.444416 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.15210 -40.04155 -38.21111 -37.69302 -37.03919 -35.89728 -33.54678 -33.12883 -32.85858 -31.17634 -29.70915 -27.60216 -27.44485 -24.45915 -23.93525 -23.13993 -22.88787 -22.14586 -19.97890 -19.17053 -18.38378 -18.34075 -17.78890 -17.27165 -17.05597 -16.75958 -16.53886 -16.41719 -16.27456 -15.65124 -15.41355 -15.21488 -14.77959 -14.56826 -14.49659 -14.25196 -14.13886 -13.87473 -13.73353 -13.25633 -13.20938 -13.13703 -12.93794 -12.92970 -12.79461 -12.56373 -12.48858 -12.40394 -12.24689 -12.13905 -11.75210 -11.60040 -11.18045 -10.85911 -10.65004 -10.64314 -10.40299 -9.96307 -9.82106 -8.26237 -6.40291 -0.78204 0.17709 0.37068 1.40897 1.42672 1.53701 1.64677 2.32481 2.38036 2.84115 2.84894 3.06835 3.09124 3.45085 3.58310 3.71626 3.88808 4.00988 4.05412 4.08122 4.11172 4.21777 4.28596 4.30906 4.41751 4.45543 4.48707 4.56941 4.74678 4.74983 4.81279 4.83421 4.92961 4.98156 5.06512 5.13935 5.24206 5.25538 5.27854 5.34122 5.40666 5.68010 5.79990 6.05634 6.16357 6.73345 7.00852 7.29801 8.85904 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016935 B = 0.002156 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.985547 B =12983.278056 C =13831.875737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.006 4.006 3 Si 0.975 3.025 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.257 1.257 7 C -0.537 4.537 8 H 0.076 0.924 9 C 0.019 3.981 10 C -0.584 4.584 11 S 2.633 3.367 12 O -0.990 6.990 13 O -0.992 6.992 14 N -1.012 6.012 15 C 0.109 3.891 16 C -0.141 4.141 17 C 0.085 3.915 18 H 0.103 0.897 19 O -0.379 6.379 20 C 0.116 3.884 21 C 0.105 3.895 22 C -0.163 4.163 23 C -0.082 4.082 24 C -0.173 4.173 25 C 0.088 3.912 26 N -0.510 5.510 27 C 0.119 3.881 28 H 0.267 0.733 29 H 0.007 0.993 30 H 0.006 0.994 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.143 0.857 40 H 0.157 0.843 41 H 0.164 0.836 42 H 0.180 0.820 43 H 0.075 0.925 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.653 -24.591 -4.529 31.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.204 4.204 3 Si 0.798 3.202 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.181 1.181 7 C -0.576 4.576 8 H 0.095 0.905 9 C -0.020 4.020 10 C -0.717 4.717 11 S 2.732 3.268 12 O -0.981 6.981 13 O -0.982 6.982 14 N -0.852 5.852 15 C -0.015 4.015 16 C -0.180 4.180 17 C 0.025 3.975 18 H 0.121 0.879 19 O -0.297 6.297 20 C 0.039 3.961 21 C -0.032 4.032 22 C -0.183 4.183 23 C -0.108 4.108 24 C -0.193 4.193 25 C -0.069 4.069 26 N -0.221 5.221 27 C -0.006 4.006 28 H 0.076 0.924 29 H 0.025 0.975 30 H 0.025 0.975 31 H 0.160 0.840 32 H 0.161 0.839 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.127 0.873 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.161 0.839 40 H 0.175 0.825 41 H 0.182 0.818 42 H 0.197 0.803 43 H 0.093 0.907 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 17.986 -24.276 -4.169 30.499 hybrid contribution -0.267 0.976 -0.330 1.064 sum 17.718 -23.301 -4.499 29.616 Atomic orbital electron populations 1.70103 1.08062 1.28310 1.50869 1.26136 0.95884 1.03931 0.94442 0.85301 0.78642 0.77625 0.78610 1.19635 1.20916 1.18093 1.21507 0.93988 0.90692 1.51458 0.90537 1.18840 0.93659 0.93093 0.96400 1.30365 1.12760 1.16165 1.12367 1.04204 0.74113 0.75831 0.72620 1.93492 1.72244 1.85699 1.46623 1.93496 1.72299 1.85721 1.46702 1.58417 1.58224 1.54471 1.14064 1.21931 0.96023 0.97046 0.86528 1.23127 0.99231 0.99263 0.96343 1.23311 0.94865 0.89618 0.89673 0.87912 1.87776 1.21256 1.52565 1.68081 1.20993 0.81105 0.95462 0.98556 1.21035 0.89192 0.96441 0.96551 1.22102 1.01750 0.96694 0.97725 1.22024 0.97496 0.95507 0.95747 1.22516 0.93635 1.01913 1.01222 1.23188 1.01741 0.90233 0.91698 1.67227 1.18603 1.17440 1.18864 1.21982 0.93297 0.98732 0.86594 0.92411 0.97462 0.97531 0.83989 0.83870 0.89641 0.91291 0.87292 0.89554 0.90183 0.89726 0.83884 0.82548 0.81832 0.80278 0.90656 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.81 13.29 21.45 0.28 -56.52 16 2 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 3 Si 0.97 43.11 29.54 68.60 2.03 45.14 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 6 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 7 C -0.54 -29.58 9.11 25.60 0.23 -29.35 16 8 H 0.08 3.87 7.74 -2.91 -0.02 3.84 16 9 C 0.02 0.99 4.98 29.85 0.15 1.14 16 10 C -0.58 -21.70 6.12 71.98 0.44 -21.26 16 11 S 2.63 94.81 5.65 -56.49 -0.32 94.49 16 12 O -0.99 -41.53 17.60 -127.65 -2.25 -43.77 16 13 O -0.99 -41.93 17.60 -127.65 -2.25 -44.18 16 14 N -1.01 -25.92 3.62 -506.01 -1.83 -27.75 16 15 C 0.11 2.15 6.89 86.73 0.60 2.75 16 16 C -0.14 -1.95 6.68 31.78 0.21 -1.74 16 17 C 0.08 1.33 3.50 32.06 0.11 1.44 16 18 H 0.10 1.27 7.90 -2.39 -0.02 1.25 16 19 O -0.38 -6.27 8.60 -148.98 -1.28 -7.55 16 20 C 0.12 1.73 6.36 71.24 0.45 2.19 16 21 C 0.10 1.87 6.78 42.55 0.29 2.16 16 22 C -0.16 -2.64 9.41 22.36 0.21 -2.43 16 23 C -0.08 -0.99 10.18 22.47 0.23 -0.76 16 24 C -0.17 -1.78 10.11 22.36 0.23 -1.55 16 25 C 0.09 1.16 11.18 84.67 0.95 2.11 16 26 N -0.51 -9.40 10.27 -183.89 -1.89 -11.29 16 27 C 0.12 2.57 6.63 86.93 0.58 3.15 16 28 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 29 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.14 4.58 8.14 -2.39 -0.02 4.56 16 32 H 0.14 4.58 8.14 -2.39 -0.02 4.57 16 33 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.08 1.11 8.11 -2.38 -0.02 1.09 16 38 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.14 2.31 7.00 -2.91 -0.02 2.29 16 40 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 41 H 0.16 0.63 8.06 -2.91 -0.02 0.60 16 42 H 0.18 1.29 8.06 -2.91 -0.02 1.26 16 43 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -79.37 383.69 -1.38 -80.75 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.99 Total: 12.72 kcal Atomic # 6 Polarization: -47.17 SS G_CDS: 5.14 Total: -42.03 kcal Atomic # 7 Polarization: -92.13 SS G_CDS: -3.44 Total: -95.57 kcal Atomic # 8 Polarization: -89.73 SS G_CDS: -5.78 Total: -95.51 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: 94.81 SS G_CDS: -0.32 Total: 94.49 kcal Total: -79.37 -1.38 -80.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269296721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.608 kcal (2) G-P(sol) polarization free energy of solvation -79.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds