Wall clock time and date at job start Tue Mar 31 2020 22:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86789 * 120.00028 * 2 1 4 4 H 1.48500 * 109.47073 * 269.99809 * 3 2 1 5 5 H 1.48503 * 109.47391 * 29.99698 * 3 2 1 6 6 H 1.48499 * 109.47268 * 149.99665 * 3 2 1 7 7 C 1.37877 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99914 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99799 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.47078 * 179.97438 * 9 7 2 11 11 C 1.34971 * 125.97624 * 124.97351 * 10 9 7 12 12 C 1.35237 * 107.85054 * 179.73008 * 11 10 9 13 13 C 1.40374 * 107.87322 * 0.43351 * 12 11 10 14 14 N 1.40403 * 125.96627 * 179.82732 * 13 12 11 15 15 C 1.33794 * 124.18201 * 4.74273 * 14 13 12 16 16 O 1.21533 * 123.76554 * 359.72668 * 15 14 13 17 17 N 1.34522 * 112.46020 * 179.73125 * 15 14 13 18 18 C 1.47314 * 106.62026 * 359.97438 * 17 15 14 19 19 H 1.08998 * 110.59976 * 241.31866 * 18 17 15 20 20 C 1.52996 * 110.59836 * 118.52567 * 18 17 15 21 21 C 1.50699 * 109.47264 * 66.45873 * 20 18 17 22 22 C 1.38243 * 119.99523 * 269.72588 * 21 20 18 23 23 C 1.38232 * 119.99453 * 179.74181 * 22 21 20 24 24 C 1.38235 * 120.00269 * 0.53058 * 23 22 21 25 25 C 1.38232 * 119.99916 * 359.74468 * 24 23 22 26 26 C 1.38232 * 120.00225 * 359.97438 * 25 24 23 27 27 C 1.34774 * 124.17571 * 184.43558 * 14 13 12 28 28 O 1.21236 * 127.15396 * 0.25151 * 27 14 13 29 29 N 1.31187 * 108.06272 * 359.56189 * 13 12 11 30 30 H 0.97007 * 119.99777 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.47163 * 60.00217 * 9 7 2 32 32 H 1.09000 * 109.47381 * 299.99959 * 9 7 2 33 33 H 1.08000 * 126.07499 * 0.02562 * 11 10 9 34 34 H 1.08002 * 126.06057 * 180.27723 * 12 11 10 35 35 H 0.97002 * 126.69023 * 180.02562 * 17 15 14 36 36 H 1.09007 * 109.47074 * 186.45513 * 20 18 17 37 37 H 1.08998 * 109.47344 * 306.45157 * 20 18 17 38 38 H 1.07993 * 119.99959 * 359.97438 * 22 21 20 39 39 H 1.08009 * 119.99775 * 180.29311 * 23 22 21 40 40 H 1.08001 * 119.99880 * 179.77256 * 24 23 22 41 41 H 1.08005 * 119.99517 * 180.02562 * 25 24 23 42 42 H 1.07998 * 120.00303 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5753 0.0022 11 6 4.8547 -3.1148 -0.8921 12 6 5.0603 -4.4050 -0.5429 13 6 4.2944 -4.6684 0.6036 14 7 4.2233 -5.8944 1.2841 15 6 4.9587 -6.9689 0.9760 16 8 5.7654 -6.9974 0.0676 17 7 4.7051 -8.0140 1.7841 18 6 3.6767 -7.5679 2.7399 19 1 4.0555 -7.6156 3.7608 20 6 2.4082 -8.4115 2.5982 21 6 2.6967 -9.8281 3.0235 22 6 3.1318 -10.7539 2.0936 23 6 3.4016 -12.0519 2.4849 24 6 3.2259 -12.4271 3.8037 25 6 2.7854 -11.5028 4.7323 26 6 2.5211 -10.2032 4.3424 27 6 3.4101 -6.1325 2.3321 28 8 2.6285 -5.3592 2.8430 29 7 3.6611 -3.5672 0.9315 30 1 -0.4850 0.8401 -0.0004 31 1 3.8745 -0.6801 0.8912 32 1 3.8752 -0.6805 -0.8888 33 1 5.2997 -2.6052 -1.7339 34 1 5.6984 -5.1088 -1.0567 35 1 5.1194 -8.8903 1.7455 36 1 1.6228 -7.9954 3.2294 37 1 2.0809 -8.4037 1.5585 38 1 3.2645 -10.4620 1.0624 39 1 3.7461 -12.7741 1.7593 40 1 3.4332 -13.4422 4.1085 41 1 2.6485 -11.7958 5.7628 42 1 2.1774 -9.4809 5.0680 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272181713.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:49 Heat of formation + Delta-G solvation = 78.621963 kcal Electronic energy + Delta-G solvation = -28296.765243 eV Core-core repulsion = 24245.147771 eV Total energy + Delta-G solvation = -4051.617473 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.65981 -40.43610 -39.59101 -38.56131 -36.37283 -35.30018 -33.53607 -32.78914 -31.36067 -31.23902 -29.61036 -29.14839 -27.50553 -25.33649 -23.65313 -23.05187 -22.84593 -21.69729 -21.32077 -20.14221 -19.40110 -17.92792 -17.39277 -17.05931 -16.90897 -16.59166 -16.19278 -15.80487 -15.53204 -15.30088 -15.08768 -14.56086 -14.45489 -14.12508 -13.97911 -13.76960 -13.56219 -13.33379 -13.17654 -12.77161 -12.69456 -12.46598 -12.24800 -12.16546 -11.54626 -11.34868 -11.22544 -10.89464 -10.79849 -10.68000 -10.38668 -10.10768 -9.86574 -9.76419 -9.56479 -9.29731 -9.07608 -8.76034 -8.45731 -7.80072 -6.22246 -4.25008 0.91115 1.02189 1.63824 1.91676 2.38703 2.82842 2.91259 3.15498 3.22595 3.23220 3.36891 3.45203 3.62332 3.85016 4.23380 4.37877 4.42120 4.50418 4.63717 4.67713 4.78333 4.99152 5.04602 5.08397 5.13635 5.26129 5.33541 5.44196 5.54095 5.67097 5.68485 5.83533 6.08754 6.15259 6.19579 6.22148 6.34925 6.36844 6.59177 6.61536 6.63963 6.90813 7.10801 7.31435 7.48509 7.68438 8.07712 8.28866 8.39197 8.87842 9.31686 10.90466 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020279 B = 0.002476 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.383754 B =11304.275271 C =12276.620403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.077 3.923 3 Si 0.873 3.127 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.536 4.536 8 H 0.086 0.914 9 C 0.231 3.769 10 N -0.314 5.314 11 C 0.057 3.943 12 C -0.274 4.274 13 C 0.250 3.750 14 N -0.487 5.487 15 C 0.712 3.288 16 O -0.528 6.528 17 N -0.720 5.720 18 C 0.105 3.895 19 H 0.131 0.869 20 C -0.083 4.083 21 C -0.084 4.084 22 C -0.115 4.115 23 C -0.118 4.118 24 C -0.122 4.122 25 C -0.118 4.118 26 C -0.112 4.112 27 C 0.514 3.486 28 O -0.420 6.420 29 N -0.252 5.252 30 H 0.268 0.732 31 H 0.045 0.955 32 H 0.052 0.948 33 H 0.175 0.825 34 H 0.158 0.842 35 H 0.440 0.560 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.475 -23.139 6.566 25.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.127 4.127 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.574 4.574 8 H 0.104 0.896 9 C 0.112 3.888 10 N -0.096 5.096 11 C -0.092 4.092 12 C -0.305 4.305 13 C -0.002 4.002 14 N -0.230 5.230 15 C 0.412 3.588 16 O -0.400 6.400 17 N -0.386 5.386 18 C -0.004 4.004 19 H 0.148 0.852 20 C -0.121 4.121 21 C -0.084 4.084 22 C -0.133 4.133 23 C -0.136 4.136 24 C -0.140 4.140 25 C -0.136 4.136 26 C -0.130 4.130 27 C 0.298 3.702 28 O -0.283 6.283 29 N -0.081 5.081 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.193 0.807 34 H 0.175 0.825 35 H 0.285 0.715 36 H 0.122 0.878 37 H 0.107 0.893 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.413 -21.797 7.175 24.441 hybrid contribution 0.975 0.093 -0.569 1.132 sum 9.387 -21.704 6.607 24.553 Atomic orbital electron populations 1.69877 1.06154 1.27292 1.48942 1.24825 0.94879 0.98763 0.94236 0.86911 0.80457 0.83871 0.78885 1.19690 1.20486 1.18859 1.21084 0.87603 0.95830 1.52842 0.89564 1.20136 0.97697 0.72510 0.98451 1.48880 1.31934 1.10488 1.18329 1.22536 0.95678 0.94253 0.96769 1.21198 1.11023 0.97274 1.01012 1.18729 1.01216 0.85308 0.94950 1.42830 1.38577 1.10523 1.31095 1.15524 0.80753 0.80088 0.82387 1.90973 1.35960 1.82201 1.30872 1.45470 1.43969 1.14947 1.34230 1.22071 0.90696 0.91109 0.96502 0.85189 1.20825 0.95539 0.91207 1.04538 1.19692 1.00032 0.94787 0.93897 1.21154 0.99389 0.93295 0.99503 1.21183 0.99919 0.96215 0.96245 1.21202 0.99620 0.99603 0.93542 1.21178 0.99261 0.93456 0.99683 1.21141 0.99815 0.96556 0.95459 1.20880 0.80267 0.89416 0.79592 1.90926 1.31496 1.51942 1.53977 1.77717 1.21274 0.94937 1.14215 0.92154 0.93760 0.93015 0.80745 0.82460 0.71460 0.87770 0.89291 0.85772 0.85935 0.86145 0.85958 0.85574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.81 13.96 55.43 0.77 -26.03 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.87 20.18 27.47 -169.99 -4.67 15.51 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 7 C -0.54 -15.27 9.79 -34.44 -0.34 -15.61 16 8 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 9 C 0.23 5.46 5.33 -5.19 -0.03 5.43 16 10 N -0.31 -7.12 3.67 -62.56 -0.23 -7.35 16 11 C 0.06 1.05 11.44 -17.24 -0.20 0.85 16 12 C -0.27 -5.15 9.88 -39.85 -0.39 -5.55 16 13 C 0.25 5.16 7.68 -154.18 -1.18 3.98 16 14 N -0.49 -8.32 2.84 -65.80 -0.19 -8.50 16 15 C 0.71 10.28 8.58 -88.02 -0.76 9.52 16 16 O -0.53 -8.85 15.49 5.34 0.08 -8.76 16 17 N -0.72 -6.88 5.90 -59.19 -0.35 -7.23 16 18 C 0.11 1.01 3.67 -68.21 -0.25 0.75 16 19 H 0.13 0.93 8.14 -51.93 -0.42 0.51 16 20 C -0.08 -0.68 5.11 -27.89 -0.14 -0.82 16 21 C -0.08 -0.61 4.98 -104.62 -0.52 -1.13 16 22 C -0.12 -0.79 8.91 -39.58 -0.35 -1.14 16 23 C -0.12 -0.74 10.05 -39.58 -0.40 -1.14 16 24 C -0.12 -0.74 10.05 -39.58 -0.40 -1.14 16 25 C -0.12 -0.74 10.05 -39.59 -0.40 -1.14 16 26 C -0.11 -0.75 9.70 -39.58 -0.38 -1.14 16 27 C 0.51 7.98 7.61 -10.55 -0.08 7.90 16 28 O -0.42 -8.20 17.17 5.60 0.10 -8.10 16 29 N -0.25 -6.04 11.57 31.48 0.36 -5.68 16 30 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.04 1.05 7.20 -51.93 -0.37 0.68 16 32 H 0.05 1.09 7.50 -51.93 -0.39 0.70 16 33 H 0.18 2.45 8.06 -52.49 -0.42 2.03 16 34 H 0.16 2.75 6.52 -52.49 -0.34 2.41 16 35 H 0.44 3.10 8.33 -40.82 -0.34 2.76 16 36 H 0.10 0.84 8.09 -51.92 -0.42 0.42 16 37 H 0.09 0.79 8.08 -51.93 -0.42 0.37 16 38 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 39 H 0.12 0.57 8.06 -52.48 -0.42 0.15 16 40 H 0.12 0.52 8.06 -52.49 -0.42 0.10 16 41 H 0.12 0.56 8.06 -52.48 -0.42 0.14 16 42 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 LS Contribution 365.67 15.07 5.51 5.51 Total: -1.00 -36.25 365.67 -9.36 -45.61 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -4.83 Total: 3.31 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -5.92 Total: 1.72 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 0.37 Total: -54.80 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: 0.18 Total: -16.87 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.67 Total: 15.51 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.25 -9.36 -45.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272181713.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.227 kcal (2) G-P(sol) polarization free energy of solvation -36.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds