Wall clock time and date at job start Tue Mar 31 2020 22:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.34972 * 125.98277 * 125.00346 * 10 9 7 12 12 C 1.35237 * 107.85618 * 179.97438 * 11 10 9 13 13 C 1.40374 * 107.87301 * 359.97438 * 12 11 10 14 14 N 1.40403 * 125.96879 * 180.02562 * 13 12 11 15 15 C 1.34771 * 124.17747 * 184.70161 * 14 13 12 16 16 O 1.21242 * 127.15776 * 359.97438 * 15 14 13 17 17 C 1.51580 * 105.68456 * 179.97438 * 15 14 13 18 18 N 1.47311 * 103.59377 * 0.31824 * 17 15 14 19 19 C 1.46496 * 126.69178 * 179.77553 * 18 17 15 20 20 C 1.50706 * 109.46963 * 270.01434 * 19 18 17 21 21 C 1.38238 * 119.99915 * 269.72842 * 20 19 18 22 22 C 1.38232 * 119.99875 * 179.76244 * 21 20 19 23 23 C 1.38236 * 119.99774 * 0.48802 * 22 21 20 24 24 C 1.38235 * 120.00296 * 359.78565 * 23 22 21 25 25 C 1.38226 * 119.99635 * 359.95781 * 24 23 22 26 26 C 1.33790 * 124.17991 * 4.98975 * 14 13 12 27 27 O 1.21541 * 123.76730 * 359.96823 * 26 14 13 28 28 N 1.31195 * 108.06237 * 359.71662 * 13 12 11 29 29 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 1.07997 * 126.07218 * 359.97438 * 11 10 9 33 33 H 1.07998 * 126.06378 * 179.97438 * 12 11 10 34 34 H 1.09002 * 110.76462 * 241.70954 * 17 15 14 35 35 H 1.08999 * 110.56563 * 118.82755 * 17 15 14 36 36 H 1.08999 * 109.47269 * 30.01197 * 19 18 17 37 37 H 1.09003 * 109.47472 * 150.01501 * 19 18 17 38 38 H 1.07999 * 119.99663 * 359.97438 * 21 20 19 39 39 H 1.08000 * 120.00074 * 180.24308 * 22 21 20 40 40 H 1.08004 * 119.99527 * 179.77026 * 23 22 21 41 41 H 1.07999 * 119.99860 * 179.97438 * 24 23 22 42 42 H 1.08002 * 119.99731 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 7 3.9998 -2.5753 0.0106 11 6 4.8585 -3.1159 -0.8794 12 6 5.0584 -4.4072 -0.5310 13 6 4.2931 -4.6672 0.6167 14 7 4.2201 -5.8920 1.2992 15 6 3.4037 -6.1284 2.3451 16 8 2.6237 -5.3529 2.8552 17 6 3.6635 -7.5655 2.7511 18 7 4.6983 -8.0117 1.8024 19 6 5.3241 -9.3351 1.7482 20 6 6.5497 -9.3476 2.6251 21 6 7.7806 -9.0049 2.0975 22 6 8.9039 -9.0115 2.9031 23 6 8.7980 -9.3706 4.2338 24 6 7.5681 -9.7188 4.7600 25 6 6.4439 -9.7070 3.9557 26 6 4.9562 -6.9670 0.9950 27 8 5.7686 -6.9958 0.0915 28 7 3.6631 -3.5639 0.9440 29 1 -0.4849 0.8400 0.0004 30 1 3.8786 -0.6821 -0.8838 31 1 3.8711 -0.6785 0.8962 32 1 5.3065 -2.6075 -1.7204 33 1 5.6940 -5.1133 -1.0447 34 1 2.7605 -8.1666 2.6444 35 1 4.0356 -7.6130 3.7746 36 1 4.6172 -10.0860 2.1011 37 1 5.6103 -9.5600 0.7207 38 1 7.8640 -8.7286 1.0568 39 1 9.8649 -8.7400 2.4919 40 1 9.6763 -9.3794 4.8622 41 1 7.4855 -9.9997 5.7995 42 1 5.4831 -9.9794 4.3667 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286033142.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:43 Heat of formation + Delta-G solvation = 90.077571 kcal Electronic energy + Delta-G solvation = -28435.294985 eV Core-core repulsion = 24384.174265 eV Total energy + Delta-G solvation = -4051.120720 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.50395 -40.39479 -39.52441 -38.48484 -36.24551 -35.47917 -33.56147 -32.41421 -31.21248 -31.19833 -29.60325 -28.57694 -27.30222 -26.31536 -23.60267 -22.89956 -22.79468 -21.78177 -21.23875 -19.97574 -19.39980 -17.59946 -17.48438 -17.10277 -16.81659 -16.47004 -16.07726 -15.64218 -15.53512 -15.20380 -15.04113 -14.58418 -14.21756 -14.20142 -14.00837 -13.71086 -13.60803 -13.20337 -13.07959 -12.88659 -12.73542 -12.49354 -12.42201 -12.15915 -11.60994 -11.30372 -11.21221 -10.87318 -10.77851 -10.67406 -10.37461 -10.09174 -9.82422 -9.55787 -9.33667 -9.21883 -9.11121 -8.75161 -8.43049 -7.77642 -6.21387 -4.24078 0.87844 1.10880 1.69308 1.88231 2.40852 2.75566 2.84741 3.16210 3.23345 3.24171 3.49616 3.54180 3.64398 3.98114 4.24140 4.33167 4.38461 4.66798 4.69883 4.80617 4.85126 4.91022 5.04290 5.12052 5.17998 5.25767 5.30157 5.33230 5.58770 5.65078 5.75274 5.85123 6.13111 6.15820 6.21475 6.22053 6.26446 6.39794 6.43420 6.62471 6.68050 6.95410 7.14330 7.33817 7.50674 7.70207 8.07157 8.30455 8.40962 8.88812 9.32567 10.91386 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021075 B = 0.002498 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.300533 B =11207.716592 C =11575.562269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.077 3.923 3 Si 0.873 3.127 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.535 4.535 8 H 0.086 0.914 9 C 0.231 3.769 10 N -0.315 5.315 11 C 0.056 3.944 12 C -0.273 4.273 13 C 0.251 3.749 14 N -0.489 5.489 15 C 0.510 3.490 16 O -0.426 6.426 17 C 0.068 3.932 18 N -0.622 5.622 19 C 0.194 3.806 20 C -0.119 4.119 21 C -0.091 4.091 22 C -0.123 4.123 23 C -0.114 4.114 24 C -0.126 4.126 25 C -0.103 4.103 26 C 0.712 3.288 27 O -0.527 6.527 28 N -0.253 5.253 29 H 0.268 0.732 30 H 0.052 0.948 31 H 0.044 0.956 32 H 0.175 0.825 33 H 0.157 0.843 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.762 -22.178 6.206 27.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.127 4.127 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.574 4.574 8 H 0.104 0.896 9 C 0.112 3.888 10 N -0.097 5.097 11 C -0.093 4.093 12 C -0.305 4.305 13 C -0.001 4.001 14 N -0.231 5.231 15 C 0.295 3.705 16 O -0.290 6.290 17 C -0.058 4.058 18 N -0.361 5.361 19 C 0.074 3.926 20 C -0.120 4.120 21 C -0.110 4.110 22 C -0.141 4.141 23 C -0.132 4.132 24 C -0.144 4.144 25 C -0.122 4.122 26 C 0.414 3.586 27 O -0.399 6.399 28 N -0.082 5.082 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.192 0.808 33 H 0.175 0.825 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.147 0.853 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 14.750 -21.005 6.798 26.552 hybrid contribution 0.865 0.633 -0.449 1.162 sum 15.616 -20.372 6.349 26.442 Atomic orbital electron populations 1.69874 1.06158 1.27288 1.48967 1.24827 0.94875 0.98759 0.94233 0.86910 0.80461 0.83865 0.78881 1.19683 1.20488 1.18859 1.21091 0.87618 0.95829 1.52814 0.89582 1.20124 0.97681 0.72544 0.98412 1.48874 1.31823 1.10615 1.18375 1.22528 0.95640 0.94242 0.96895 1.21182 1.11050 0.97175 1.01053 1.18742 1.01204 0.85325 0.94824 1.42887 1.38491 1.10429 1.31258 1.20965 0.80124 0.89853 0.79527 1.90934 1.31934 1.52041 1.54117 1.22527 0.94053 0.92751 0.96458 1.47556 1.42110 1.12448 1.33985 1.20215 0.91494 0.80158 1.00749 1.20246 0.95277 1.01524 0.94995 1.21232 0.92022 0.97165 1.00575 1.21211 0.98817 0.99979 0.94092 1.21228 0.97746 0.98729 0.95517 1.21143 0.92821 1.00586 0.99824 1.21062 0.98723 0.99351 0.93060 1.15513 0.80836 0.79773 0.82491 1.90917 1.35562 1.81988 1.31429 1.77728 1.21498 0.95053 1.13937 0.92158 0.93030 0.93804 0.80790 0.82501 0.85713 0.86135 0.88369 0.88116 0.85333 0.85933 0.86123 0.85996 0.85919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.02 13.96 55.43 0.77 -26.24 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.87 20.35 27.47 -169.99 -4.67 15.68 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.26 -5.83 6.54 56.52 0.37 -5.46 16 7 C -0.54 -15.44 9.80 -34.44 -0.34 -15.77 16 8 H 0.09 2.84 8.06 -52.49 -0.42 2.41 16 9 C 0.23 5.54 5.33 -5.20 -0.03 5.52 16 10 N -0.31 -7.25 3.66 -62.57 -0.23 -7.48 16 11 C 0.06 1.05 11.44 -17.24 -0.20 0.86 16 12 C -0.27 -5.22 9.88 -39.85 -0.39 -5.62 16 13 C 0.25 5.30 7.68 -154.18 -1.18 4.11 16 14 N -0.49 -8.60 2.83 -65.79 -0.19 -8.79 16 15 C 0.51 8.16 8.28 -10.56 -0.09 8.07 16 16 O -0.43 -8.65 17.17 5.59 0.10 -8.56 16 17 C 0.07 0.62 7.66 -4.32 -0.03 0.59 16 18 N -0.62 -6.35 3.00 -181.40 -0.54 -6.89 16 19 C 0.19 1.38 6.27 -5.19 -0.03 1.34 16 20 C -0.12 -0.96 5.46 -104.62 -0.57 -1.53 16 21 C -0.09 -0.84 9.70 -39.58 -0.38 -1.22 16 22 C -0.12 -1.03 10.05 -39.58 -0.40 -1.42 16 23 C -0.11 -0.86 10.05 -39.58 -0.40 -1.26 16 24 C -0.13 -0.89 10.05 -39.59 -0.40 -1.29 16 25 C -0.10 -0.72 9.70 -39.59 -0.38 -1.10 16 26 C 0.71 10.61 8.27 -88.02 -0.73 9.88 16 27 O -0.53 -8.76 15.16 5.33 0.08 -8.68 16 28 N -0.25 -6.19 11.58 31.48 0.36 -5.82 16 29 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.05 1.10 7.50 -51.93 -0.39 0.71 16 31 H 0.04 1.05 7.19 -51.93 -0.37 0.68 16 32 H 0.17 2.49 8.06 -52.49 -0.42 2.07 16 33 H 0.16 2.77 6.52 -52.49 -0.34 2.43 16 34 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.10 0.38 8.09 -51.93 -0.42 -0.04 16 37 H 0.10 0.73 7.97 -51.93 -0.41 0.31 16 38 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 39 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 41 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 42 H 0.12 0.57 8.06 -52.49 -0.42 0.14 16 LS Contribution 368.93 15.07 5.56 5.56 Total: -1.00 -37.56 368.93 -9.32 -46.88 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -4.91 Total: 1.08 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -5.65 Total: 3.26 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.18 Total: -55.23 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: 0.18 Total: -17.23 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.67 Total: 15.68 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.56 -9.32 -46.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286033142.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.956 kcal (2) G-P(sol) polarization free energy of solvation -37.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds