Wall clock time and date at job start Tue Mar 31 2020 22:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00342 * 2 1 4 4 H 1.48487 * 109.47498 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46778 * 300.00415 * 3 2 1 6 6 H 1.48505 * 109.46675 * 59.99542 * 3 2 1 7 7 C 1.37883 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99963 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99875 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47230 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47344 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99671 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00354 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00615 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47291 * 179.97438 * 14 13 11 16 16 S 1.81404 * 109.46664 * 179.97438 * 15 14 13 17 17 O 1.42097 * 110.54225 * 68.38050 * 16 15 14 18 18 O 1.42093 * 110.54431 * 291.62399 * 16 15 14 19 19 N 1.65604 * 104.44699 * 179.97438 * 16 15 14 20 20 C 1.46497 * 119.99642 * 64.99936 * 19 16 15 21 21 C 1.50707 * 109.47012 * 164.99939 * 20 19 16 22 22 C 1.38238 * 119.99792 * 90.00154 * 21 20 19 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.98090 * 21 20 19 27 27 H 0.96995 * 119.99799 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47429 * 59.99525 * 9 7 2 29 29 H 1.09007 * 109.47191 * 299.99735 * 9 7 2 30 30 H 1.08999 * 109.46901 * 59.99288 * 10 9 7 31 31 H 1.08998 * 109.46781 * 299.99638 * 10 9 7 32 32 H 0.97007 * 119.99829 * 359.97438 * 13 11 10 33 33 H 1.09001 * 109.46660 * 59.99757 * 14 13 11 34 34 H 1.08996 * 109.46904 * 300.00558 * 14 13 11 35 35 H 1.08999 * 109.46802 * 60.00254 * 15 14 13 36 36 H 1.08998 * 109.47106 * 299.99861 * 15 14 13 37 37 H 0.96999 * 120.00279 * 245.00367 * 19 16 15 38 38 H 1.09005 * 109.47643 * 45.00400 * 20 19 16 39 39 H 1.09000 * 109.47513 * 284.99564 * 20 19 16 40 40 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 41 41 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 44 44 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4918 -4.9672 -0.0020 12 8 0.2790 -4.9671 -0.0030 13 7 2.1656 -6.1344 -0.0024 14 6 1.4332 -7.4031 -0.0035 15 6 2.4275 -8.5660 -0.0044 16 16 1.5203 -10.1370 -0.0050 17 8 0.8461 -10.3230 -1.2419 18 8 0.8467 -10.3243 1.2320 19 7 2.7025 -11.2967 -0.0067 20 6 3.6016 -11.4277 1.1425 21 6 4.3216 -12.7496 1.0688 22 6 5.5311 -12.8419 0.4058 23 6 6.1918 -14.0543 0.3387 24 6 5.6433 -15.1742 0.9351 25 6 4.4313 -15.0831 1.5936 26 6 3.7729 -13.8697 1.6647 27 1 -0.4849 0.8400 0.0004 28 1 0.6247 -2.5563 -0.8919 29 1 0.6241 -2.5575 0.8881 30 1 2.8713 -3.6047 0.8890 31 1 2.8726 -3.6040 -0.8910 32 1 3.1357 -6.1344 -0.0027 33 1 0.8069 -7.4603 -0.8938 34 1 0.8061 -7.4614 0.8861 35 1 3.0540 -8.5090 0.8857 36 1 3.0541 -8.5076 -0.8943 37 1 2.7997 -11.8892 -0.7685 38 1 3.0222 -11.3806 2.0646 39 1 4.3294 -10.6164 1.1288 40 1 5.9598 -11.9667 -0.0599 41 1 7.1365 -14.1264 -0.1797 42 1 6.1598 -16.1213 0.8830 43 1 4.0007 -15.9591 2.0558 44 1 2.8284 -13.7975 2.1834 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292669583.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:55 Heat of formation + Delta-G solvation = -96.604755 kcal Electronic energy + Delta-G solvation = -25583.986971 eV Core-core repulsion = 21627.922297 eV Total energy + Delta-G solvation = -3956.064673 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.85896 -39.25912 -37.48146 -36.34378 -35.89585 -35.37757 -33.47345 -31.54344 -31.49409 -31.42272 -30.44644 -26.26351 -25.93739 -23.74561 -23.10987 -21.92808 -21.55886 -20.06310 -19.59026 -18.24391 -17.57280 -17.08999 -16.73549 -16.50100 -15.96650 -15.86590 -15.71550 -15.45329 -15.41200 -15.00183 -14.41572 -14.33043 -14.01953 -13.82332 -13.56608 -13.22496 -13.12316 -12.66028 -12.62549 -12.49553 -12.44379 -12.34942 -12.20292 -11.82471 -11.59761 -11.54057 -11.40477 -11.16952 -10.95700 -10.59524 -10.09161 -9.99024 -9.70280 -9.44753 -9.38312 -9.22390 -9.04837 -8.96670 -8.33593 -5.97300 -4.01961 -0.23726 0.74729 0.87631 2.30991 3.16126 3.20645 3.29690 3.31736 3.38795 3.41803 3.58044 3.76782 4.00057 4.07795 4.28892 4.38857 4.46443 4.49682 4.59721 4.71470 4.78684 4.91906 4.96384 5.12768 5.22550 5.32631 5.34880 5.37734 5.44686 5.51618 5.67683 5.91443 5.99605 6.03189 6.17819 6.18890 6.42808 6.45241 6.50905 6.84829 7.72490 7.75715 7.84060 8.05547 8.36320 8.67897 9.06619 9.61740 11.13663 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024173 B = 0.001657 C = 0.001583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.034291 B =16896.034394 C =17686.602079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.035 3.965 10 C -0.128 4.128 11 C 0.508 3.492 12 O -0.529 6.529 13 N -0.739 5.739 14 C 0.131 3.869 15 C -0.648 4.648 16 S 2.621 3.379 17 O -0.948 6.948 18 O -0.947 6.947 19 N -1.116 6.116 20 C 0.153 3.847 21 C -0.101 4.101 22 C -0.103 4.103 23 C -0.123 4.123 24 C -0.114 4.114 25 C -0.122 4.122 26 C -0.100 4.100 27 H 0.261 0.739 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.400 0.600 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.420 0.580 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.056 -32.816 1.715 36.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.566 4.566 8 H 0.075 0.925 9 C -0.003 4.003 10 C -0.168 4.168 11 C 0.297 3.703 12 O -0.404 6.404 13 N -0.395 5.395 14 C 0.005 3.995 15 C -0.776 4.776 16 S 2.711 3.289 17 O -0.938 6.938 18 O -0.936 6.936 19 N -0.876 5.876 20 C 0.028 3.972 21 C -0.103 4.103 22 C -0.122 4.122 23 C -0.141 4.141 24 C -0.132 4.132 25 C -0.140 4.140 26 C -0.118 4.118 27 H 0.070 0.930 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.235 0.765 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.157 0.843 36 H 0.160 0.840 37 H 0.255 0.745 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 13.031 -32.691 1.886 35.243 hybrid contribution 1.781 0.905 -0.340 2.026 sum 14.812 -31.786 1.546 35.102 Atomic orbital electron populations 1.70008 1.06060 1.26516 1.50139 1.25034 0.94828 0.99261 0.95280 0.86525 0.79945 0.83810 0.77595 1.19787 1.21011 1.21015 1.21247 0.92952 0.90973 1.51443 0.92537 1.18929 0.93211 0.89366 0.98761 1.21876 1.00756 0.91613 1.02603 1.21689 0.88769 0.85556 0.74334 1.90695 1.14434 1.87510 1.47745 1.46135 1.10026 1.04734 1.78642 1.20808 0.92807 0.82085 1.03813 1.30938 1.14186 1.20118 1.12361 1.04773 0.73957 0.75616 0.74539 1.93641 1.70657 1.84481 1.45070 1.93627 1.70346 1.84060 1.45604 1.55729 1.52979 1.51004 1.27841 1.20263 0.92501 0.95264 0.89203 1.19758 0.95653 0.94898 0.99987 1.21128 0.94608 0.98136 0.98332 1.21190 1.00170 0.92841 0.99875 1.21256 0.95841 0.98711 0.97378 1.21214 0.95488 0.97778 0.99515 1.21190 0.99768 0.92254 0.98622 0.92968 0.95718 0.95720 0.90089 0.90091 0.76544 0.90221 0.90187 0.84293 0.84035 0.74534 0.89022 0.90658 0.85658 0.85817 0.85952 0.85777 0.85502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.40 13.29 55.43 0.74 -26.67 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 7 C -0.53 -14.90 9.11 -34.44 -0.31 -15.21 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.93 4.26 -27.88 -0.12 0.82 16 10 C -0.13 -2.54 5.64 -27.89 -0.16 -2.70 16 11 C 0.51 9.61 7.83 -10.99 -0.09 9.53 16 12 O -0.53 -12.50 15.98 5.55 0.09 -12.41 16 13 N -0.74 -9.72 5.56 -60.30 -0.33 -10.06 16 14 C 0.13 1.54 5.68 -4.04 -0.02 1.52 16 15 C -0.65 -4.25 6.19 37.16 0.23 -4.02 16 16 S 2.62 21.98 5.46 -107.50 -0.59 21.39 16 17 O -0.95 -11.43 18.08 -57.54 -1.04 -12.47 16 18 O -0.95 -11.18 17.50 -57.54 -1.01 -12.19 16 19 N -1.12 -6.15 5.88 -11.65 -0.07 -6.22 16 20 C 0.15 0.72 6.26 -5.19 -0.03 0.69 16 21 C -0.10 -0.55 5.28 -104.62 -0.55 -1.11 16 22 C -0.10 -0.51 9.70 -39.58 -0.38 -0.89 16 23 C -0.12 -0.59 10.05 -39.58 -0.40 -0.99 16 24 C -0.11 -0.56 10.05 -39.58 -0.40 -0.96 16 25 C -0.12 -0.65 10.05 -39.58 -0.40 -1.04 16 26 C -0.10 -0.58 9.70 -39.58 -0.38 -0.97 16 27 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 29 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 30 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.40 3.75 8.47 -40.82 -0.35 3.40 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.14 0.55 8.14 -51.92 -0.42 0.13 16 36 H 0.14 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.42 1.98 8.61 -34.48 -0.30 1.68 16 38 H 0.09 0.45 7.64 -51.93 -0.40 0.06 16 39 H 0.08 0.18 8.09 -51.93 -0.42 -0.24 16 40 H 0.13 0.40 8.06 -52.48 -0.42 -0.02 16 41 H 0.12 0.39 8.06 -52.49 -0.42 -0.04 16 42 H 0.12 0.38 8.06 -52.49 -0.42 -0.04 16 43 H 0.12 0.46 8.06 -52.49 -0.42 0.03 16 44 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 LS Contribution 392.03 15.07 5.91 5.91 Total: -1.00 -40.31 392.03 -10.93 -51.24 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -6.49 Total: -1.31 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -3.11 Total: -13.76 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.33 Total: -42.94 kcal Atomic # 8 Polarization: -35.12 SS G_CDS: -1.96 Total: -37.08 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 21.98 SS G_CDS: -0.59 Total: 21.39 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -40.31 -10.93 -51.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292669583.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.366 kcal (2) G-P(sol) polarization free energy of solvation -40.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds