Wall clock time and date at job start Tue Mar 31 2020 23:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30888 * 1 3 3 Si 1.86795 * 120.00071 * 2 1 4 4 H 1.48496 * 109.47107 * 275.00096 * 3 2 1 5 5 H 1.48505 * 109.47247 * 34.99404 * 3 2 1 6 6 H 1.48492 * 109.47281 * 154.99334 * 3 2 1 7 7 C 1.39889 * 119.99918 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00040 * 149.28253 * 7 2 1 9 9 C 1.41159 * 120.00105 * 329.27892 * 7 2 1 10 10 C 1.40871 * 120.16466 * 164.39533 * 9 7 2 11 11 C 1.36375 * 119.83139 * 180.02562 * 10 9 7 12 12 C 1.39480 * 120.16373 * 0.02562 * 11 10 9 13 13 N 1.39244 * 119.83217 * 179.97438 * 12 11 10 14 14 C 1.34780 * 119.99970 * 33.61822 * 13 12 11 15 15 O 1.21576 * 120.00066 * 5.10751 * 14 13 12 16 16 N 1.34773 * 119.99921 * 185.11072 * 14 13 12 17 17 C 1.46509 * 119.99913 * 180.02562 * 16 14 13 18 18 C 1.50697 * 109.46806 * 179.97438 * 17 16 14 19 19 O 1.21286 * 120.00534 * 0.02562 * 18 17 16 20 20 N 1.34781 * 119.99751 * 180.27426 * 18 17 16 21 21 C 1.39950 * 120.00099 * 174.91958 * 20 18 17 22 22 C 1.39280 * 120.49001 * 329.26726 * 21 20 18 23 23 C 1.38506 * 118.35869 * 179.73459 * 22 21 20 24 24 C 1.38272 * 119.23676 * 0.53224 * 23 22 21 25 25 N 1.31858 * 120.91942 * 359.72419 * 24 23 22 26 26 C 1.31825 * 121.79398 * 359.97438 * 25 24 23 27 27 C 1.39480 * 120.33654 * 0.24691 * 12 11 10 28 28 C 1.36375 * 120.16461 * 359.44972 * 27 12 11 29 29 H 0.96994 * 119.99714 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.08423 * 0.02562 * 10 9 7 31 31 H 1.07991 * 119.91532 * 180.02562 * 11 10 9 32 32 H 0.96997 * 120.00220 * 213.62638 * 13 12 11 33 33 H 0.97000 * 119.99999 * 0.02562 * 16 14 13 34 34 H 1.09003 * 109.46568 * 59.99999 * 17 16 14 35 35 H 1.08991 * 109.47032 * 299.99725 * 17 16 14 36 36 H 0.96999 * 119.99810 * 354.92702 * 20 18 17 37 37 H 1.07996 * 120.81892 * 359.97438 * 22 21 20 38 38 H 1.08003 * 120.38164 * 180.25728 * 23 22 21 39 39 H 1.07993 * 119.54226 * 179.75065 * 24 23 22 40 40 H 1.07996 * 119.66496 * 179.97438 * 26 25 24 41 41 H 1.08005 * 119.91565 * 179.70166 * 27 12 11 42 42 H 1.08002 * 120.08527 * 180.24873 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3847 2.1074 -1.3947 5 1 1.4971 2.6199 0.8029 6 1 3.5891 1.4120 0.5918 7 6 2.0083 -1.2115 0.0005 8 1 2.9747 -1.2773 -0.4772 9 6 1.4511 -2.3479 0.6256 10 6 1.9713 -3.6294 0.3580 11 6 1.4275 -4.7227 0.9652 12 6 0.3584 -4.5744 1.8488 13 7 -0.1919 -5.6955 2.4645 14 6 0.5951 -6.7400 2.7902 15 8 1.7983 -6.6671 2.6320 16 7 0.0483 -7.8653 3.2912 17 6 0.9039 -9.0006 3.6458 18 6 0.0526 -10.1238 4.1793 19 8 -1.1504 -9.9895 4.2554 20 7 0.6286 -11.2757 4.5766 21 6 -0.1474 -12.2777 5.1702 22 6 -1.2713 -11.9479 5.9239 23 6 -2.0105 -12.9750 6.4869 24 6 -1.6058 -14.2830 6.2934 25 7 -0.5334 -14.5617 5.5786 26 6 0.1947 -13.6150 5.0206 27 6 -0.1658 -3.3094 2.1143 28 6 0.3717 -2.2062 1.5194 29 1 -0.4849 0.8400 0.0004 30 1 2.7988 -3.7457 -0.3262 31 1 1.8255 -5.7057 0.7614 32 1 -1.1418 -5.7248 2.6589 33 1 -0.9117 -7.9237 3.4171 34 1 1.6184 -8.6924 4.4091 35 1 1.4416 -9.3405 2.7608 36 1 1.5810 -11.4102 4.4511 37 1 -1.5614 -10.9169 6.0625 38 1 -2.8903 -12.7566 7.0739 39 1 -2.1762 -15.0874 6.7335 40 1 1.0668 -13.8823 4.4425 41 1 -0.9967 -3.2030 2.7960 42 1 -0.0326 -1.2269 1.7291 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338244792.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:40 Heat of formation + Delta-G solvation = 6.436691 kcal Electronic energy + Delta-G solvation = -26810.635440 eV Core-core repulsion = 22755.887779 eV Total energy + Delta-G solvation = -4054.747661 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.37539 -40.10636 -39.43143 -37.41289 -35.72675 -34.72191 -34.19550 -33.01409 -32.57854 -30.86048 -29.57054 -29.08157 -27.64257 -24.85502 -24.29584 -23.56432 -21.77310 -21.10086 -20.80491 -20.16957 -18.82995 -18.16977 -17.39133 -17.35973 -17.06631 -16.69196 -16.42106 -15.84995 -15.33227 -15.07452 -14.83755 -14.52983 -14.37124 -14.28077 -13.95789 -13.64981 -13.35431 -13.24590 -12.82208 -12.68294 -12.58275 -12.08121 -11.93312 -11.49094 -11.41835 -11.11007 -10.96683 -10.75924 -10.52686 -10.22704 -10.14601 -9.81903 -9.71558 -9.65683 -9.26608 -9.10512 -8.81881 -8.66842 -7.51814 -7.09515 -6.87469 -4.24087 0.54532 0.83393 1.97654 2.18155 2.66798 3.02160 3.04967 3.08379 3.13855 3.19517 3.38512 3.65932 3.89043 3.95112 4.10547 4.37915 4.48407 4.53910 4.62670 4.66981 4.85850 5.03816 5.06710 5.13729 5.52271 5.68889 5.72515 5.73349 6.21796 6.25209 6.31402 6.44849 6.69066 6.79328 6.80629 7.01253 7.11330 7.29661 7.35926 7.40737 7.50839 7.60687 7.87770 7.98694 8.05474 8.27732 8.47442 8.58423 8.87001 8.90570 9.09047 10.02688 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.048396 B = 0.001575 C = 0.001541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.415653 B =17775.922842 C =18164.798882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.084 3.916 3 Si 0.899 3.101 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.459 4.459 8 H 0.081 0.919 9 C 0.106 3.894 10 C -0.225 4.225 11 C -0.069 4.069 12 C -0.003 4.003 13 N -0.660 5.660 14 C 0.698 3.302 15 O -0.580 6.580 16 N -0.745 5.745 17 C 0.127 3.873 18 C 0.513 3.487 19 O -0.515 6.515 20 N -0.666 5.666 21 C 0.099 3.901 22 C -0.081 4.081 23 C -0.150 4.150 24 C 0.078 3.922 25 N -0.466 5.466 26 C 0.076 3.924 27 C -0.106 4.106 28 C -0.172 4.172 29 H 0.283 0.717 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.392 0.608 33 H 0.404 0.596 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.419 0.581 37 H 0.149 0.851 38 H 0.139 0.861 39 H 0.158 0.842 40 H 0.159 0.841 41 H 0.089 0.911 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.158 -21.218 11.451 24.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.137 4.137 3 Si 0.723 3.277 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.487 4.487 8 H 0.099 0.901 9 C 0.103 3.897 10 C -0.245 4.245 11 C -0.089 4.089 12 C -0.095 4.095 13 N -0.305 5.305 14 C 0.398 3.602 15 O -0.458 6.458 16 N -0.406 5.406 17 C -0.002 4.002 18 C 0.301 3.699 19 O -0.389 6.389 20 N -0.312 5.312 21 C 0.003 3.997 22 C -0.109 4.109 23 C -0.170 4.170 24 C -0.080 4.080 25 N -0.174 5.174 26 C -0.084 4.084 27 C -0.126 4.126 28 C -0.192 4.192 29 H 0.093 0.907 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.225 0.775 33 H 0.241 0.759 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.256 0.744 37 H 0.166 0.834 38 H 0.157 0.843 39 H 0.175 0.825 40 H 0.176 0.824 41 H 0.107 0.893 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.868 -21.717 11.190 24.598 hybrid contribution -0.447 1.507 0.218 1.587 sum -3.315 -20.210 11.408 23.443 Atomic orbital electron populations 1.69941 1.08019 1.29708 1.31808 1.25972 0.94427 1.01630 0.91630 0.86452 0.81410 0.80703 0.79170 1.19477 1.19901 1.18127 1.19546 1.04319 0.93470 1.31373 0.90120 1.17615 0.90518 0.91764 0.89832 1.20535 1.05141 0.92335 1.06455 1.20241 0.95819 0.97994 0.94845 1.16876 1.03880 0.84208 1.04571 1.42031 1.10118 1.15955 1.62445 1.15848 0.85572 0.80065 0.78671 1.90918 1.12613 1.82036 1.60192 1.44732 1.10863 1.13672 1.71356 1.20738 0.92497 0.84636 1.02321 1.20974 0.88993 0.83215 0.76722 1.90715 1.14730 1.80411 1.53035 1.43347 1.12479 1.15294 1.60059 1.18832 0.95187 0.89349 0.96373 1.21714 0.94023 1.01562 0.93642 1.22126 1.00905 0.93405 1.00596 1.22759 0.93326 0.95885 0.95992 1.67665 1.05728 1.36185 1.07844 1.22607 1.00261 0.86584 0.98963 1.20142 1.00297 0.91488 1.00715 1.20796 1.00671 0.97056 1.00636 0.90654 0.88838 0.88016 0.77470 0.75919 0.87949 0.88033 0.74424 0.83355 0.84276 0.82482 0.82401 0.89320 0.86460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.34 11.22 55.54 0.62 -18.72 16 2 C 0.08 2.08 4.91 -17.34 -0.09 1.99 16 3 Si 0.90 18.17 29.65 -169.99 -5.04 13.13 16 4 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.46 -12.13 8.98 -37.86 -0.34 -12.47 16 8 H 0.08 2.06 8.00 -52.49 -0.42 1.64 16 9 C 0.11 2.83 5.64 -106.80 -0.60 2.23 16 10 C -0.22 -5.73 9.74 -39.26 -0.38 -6.11 16 11 C -0.07 -1.67 8.57 -39.79 -0.34 -2.01 16 12 C 0.00 -0.07 6.29 -83.57 -0.53 -0.59 16 13 N -0.66 -11.85 5.32 -14.10 -0.07 -11.93 16 14 C 0.70 12.13 8.29 -86.92 -0.72 11.41 16 15 O -0.58 -12.22 14.00 5.30 0.07 -12.14 16 16 N -0.75 -9.36 5.53 -66.41 -0.37 -9.73 16 17 C 0.13 1.18 6.16 -5.19 -0.03 1.15 16 18 C 0.51 4.46 7.68 -10.98 -0.08 4.37 16 19 O -0.51 -5.96 13.21 5.55 0.07 -5.88 16 20 N -0.67 -4.13 5.36 -9.77 -0.05 -4.18 16 21 C 0.10 0.78 6.35 -83.54 -0.53 0.25 16 22 C -0.08 -0.69 8.78 -39.10 -0.34 -1.03 16 23 C -0.15 -1.04 10.10 -39.47 -0.40 -1.44 16 24 C 0.08 0.56 11.18 -17.53 -0.20 0.36 16 25 N -0.47 -4.11 10.35 -13.09 -0.14 -4.24 16 26 C 0.08 0.57 11.12 -17.33 -0.19 0.37 16 27 C -0.11 -2.44 9.89 -39.79 -0.39 -2.84 16 28 C -0.17 -4.42 8.76 -39.26 -0.34 -4.76 16 29 H 0.28 6.36 8.30 -40.82 -0.34 6.03 16 30 H 0.09 2.26 8.06 -52.49 -0.42 1.84 16 31 H 0.10 2.42 6.40 -52.49 -0.34 2.08 16 32 H 0.39 5.70 8.83 -40.82 -0.36 5.34 16 33 H 0.40 4.61 7.46 -40.82 -0.30 4.30 16 34 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.42 1.20 8.81 -40.82 -0.36 0.84 16 37 H 0.15 1.37 6.32 -52.49 -0.33 1.04 16 38 H 0.14 0.64 8.06 -52.48 -0.42 0.21 16 39 H 0.16 0.71 8.06 -52.49 -0.42 0.28 16 40 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 42 H 0.12 3.07 6.01 -52.49 -0.32 2.75 16 LS Contribution 365.11 15.07 5.50 5.50 Total: -1.00 -33.70 365.11 -9.43 -43.13 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -4.52 Total: 14.17 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -5.51 Total: -9.12 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: -0.01 Total: -48.79 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: 0.15 Total: -18.03 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.04 Total: 13.13 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.70 -9.43 -43.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338244792.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.570 kcal (2) G-P(sol) polarization free energy of solvation -33.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds