Wall clock time and date at job start Tue Mar 31 2020 23:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86806 * 119.99981 * 2 1 4 4 H 1.48496 * 109.47180 * 240.00567 * 3 2 1 5 5 H 1.48508 * 109.46921 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46991 * 120.00376 * 3 2 1 7 7 C 1.39935 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00301 * 197.87494 * 7 2 1 9 9 C 1.41439 * 119.99968 * 17.87938 * 7 2 1 10 10 C 1.40784 * 120.17543 * 204.44411 * 9 7 2 11 11 C 1.37708 * 120.04213 * 180.02562 * 10 9 7 12 12 C 1.38373 * 120.40732 * 359.70176 * 11 10 9 13 13 C 1.39882 * 120.36056 * 0.55230 * 12 11 10 14 14 C 1.47883 * 120.02510 * 179.74275 * 13 12 11 15 15 O 1.21549 * 119.99958 * 179.72876 * 14 13 12 16 16 N 1.34777 * 120.00395 * 359.72450 * 14 13 12 17 17 C 1.46497 * 120.00126 * 179.97438 * 16 14 13 18 18 C 1.52996 * 109.47039 * 180.02562 * 17 16 14 19 19 N 1.46506 * 109.47449 * 179.97438 * 18 17 16 20 20 C 1.34770 * 120.00146 * 180.02562 * 19 18 17 21 21 O 1.21514 * 120.00258 * 0.02562 * 20 19 18 22 22 C 1.48149 * 119.99648 * 180.02562 * 20 19 18 23 23 C 1.39446 * 120.09532 * 179.97438 * 22 20 19 24 24 N 1.32083 * 119.87123 * 179.97438 * 23 22 20 25 25 C 1.32131 * 120.07444 * 0.02562 * 24 23 22 26 26 C 1.38734 * 120.19620 * 0.27593 * 25 24 23 27 27 N 1.31806 * 120.12109 * 359.42752 * 26 25 24 28 28 C 1.39035 * 119.94536 * 359.47353 * 13 12 11 29 29 H 0.96998 * 120.00047 * 359.97438 * 1 2 3 30 30 H 1.08003 * 119.98005 * 0.02562 * 10 9 7 31 31 H 1.08002 * 119.79932 * 179.97438 * 11 10 9 32 32 H 1.08007 * 119.82123 * 180.28124 * 12 11 10 33 33 H 0.97000 * 119.99305 * 0.02562 * 16 14 13 34 34 H 1.09001 * 109.47387 * 60.00096 * 17 16 14 35 35 H 1.09001 * 109.47108 * 300.00166 * 17 16 14 36 36 H 1.09008 * 109.47163 * 60.00399 * 18 17 16 37 37 H 1.08997 * 109.47578 * 300.00473 * 18 17 16 38 38 H 0.97004 * 119.99386 * 0.02562 * 19 18 17 39 39 H 1.07996 * 120.06283 * 0.02562 * 23 22 20 40 40 H 1.07995 * 119.90544 * 179.97438 * 25 24 23 41 41 H 1.07997 * 119.93959 * 179.70618 * 26 25 24 42 42 H 1.07997 * 120.19776 * 180.22704 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0959 1.6965 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0080 -1.2118 -0.0005 8 1 3.0489 -1.2346 0.2865 9 6 1.3521 -2.4070 -0.3771 10 6 1.8264 -3.6499 0.0835 11 6 1.1859 -4.8119 -0.2853 12 6 0.0711 -4.7677 -1.1038 13 6 -0.4115 -3.5425 -1.5756 14 6 -1.6001 -3.5043 -2.4546 15 8 -2.0220 -2.4391 -2.8603 16 7 -2.2156 -4.6507 -2.8059 17 6 -3.3934 -4.6128 -3.6762 18 6 -3.8948 -6.0379 -3.9181 19 7 -5.0731 -6.0001 -4.7880 20 6 -5.6892 -7.1464 -5.1384 21 8 -5.2677 -8.2113 -4.7324 22 6 -6.8803 -7.1080 -6.0184 23 6 -7.5190 -8.2928 -6.3827 24 7 -8.5809 -8.2535 -7.1671 25 6 -9.0370 -7.0938 -7.6064 26 6 -8.4001 -5.9136 -7.2509 27 7 -7.3433 -5.9435 -6.4638 28 6 0.2239 -2.3602 -1.2129 29 1 -0.4850 0.8400 0.0004 30 1 2.6931 -3.6922 0.7266 31 1 1.5534 -5.7633 0.0701 32 1 -0.4265 -5.6846 -1.3835 33 1 -1.8790 -5.5008 -2.4819 34 1 -3.1269 -4.1545 -4.6286 35 1 -4.1793 -4.0276 -3.1987 36 1 -4.1615 -6.4959 -2.9656 37 1 -3.1091 -6.6235 -4.3954 38 1 -5.4097 -5.1499 -5.1117 39 1 -7.1466 -9.2408 -6.0234 40 1 -9.9052 -7.0648 -8.2480 41 1 -8.7736 -4.9684 -7.6162 42 1 -0.1474 -1.4117 -1.5718 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338661537.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:51 Heat of formation + Delta-G solvation = -28.107007 kcal Electronic energy + Delta-G solvation = -26686.948500 eV Core-core repulsion = 22630.702912 eV Total energy + Delta-G solvation = -4056.245588 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.32461 -40.99253 -40.43195 -38.85826 -37.05751 -35.72790 -35.56868 -34.89426 -32.87210 -32.18367 -31.28128 -29.98026 -27.23802 -26.59406 -25.64103 -24.63154 -23.38161 -22.72581 -22.21623 -21.19353 -19.68163 -19.34647 -18.67695 -17.95386 -17.71272 -17.38445 -17.15015 -16.84402 -16.50486 -16.36206 -16.33988 -15.90977 -15.54200 -15.31430 -15.08608 -14.88858 -14.77644 -14.37385 -14.25893 -13.88929 -13.49431 -13.06621 -12.96533 -12.90244 -12.82540 -12.78727 -12.51863 -12.44142 -12.19546 -11.91601 -11.68466 -11.50860 -11.06187 -10.85526 -10.61652 -10.31268 -10.25571 -10.19050 -9.47523 -9.38080 -8.66376 -6.37702 -0.72831 -0.05241 0.37236 1.01934 1.36743 1.48129 1.51071 1.53376 1.57690 2.08460 2.19631 2.39380 2.67485 2.78608 2.89131 3.16664 3.35003 3.52559 3.70171 3.74932 3.96627 4.04067 4.06386 4.28969 4.33612 4.43958 4.51087 4.60482 4.75843 4.77290 4.91765 5.08980 5.10810 5.19627 5.23574 5.31190 5.37832 5.52340 5.86250 5.92916 5.97992 6.05720 6.22664 6.29076 6.48209 6.58303 6.65715 6.88283 6.89448 6.94821 7.26132 8.30304 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022743 B = 0.001744 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.849010 B =16050.326799 C =17189.261338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.030 3.970 3 Si 0.982 3.018 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.253 1.253 7 C -0.498 4.498 8 H 0.084 0.916 9 C 0.066 3.934 10 C -0.217 4.217 11 C -0.096 4.096 12 C -0.197 4.197 13 C -0.140 4.140 14 C 0.565 3.435 15 O -0.585 6.585 16 N -0.711 5.711 17 C 0.115 3.885 18 C 0.118 3.882 19 N -0.698 5.698 20 C 0.577 3.423 21 O -0.556 6.556 22 C 0.009 3.991 23 C 0.102 3.898 24 N -0.462 5.462 25 C 0.086 3.914 26 C 0.057 3.943 27 N -0.428 5.428 28 C -0.131 4.131 29 H 0.287 0.713 30 H 0.108 0.892 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.416 0.584 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.420 0.580 39 H 0.181 0.819 40 H 0.218 0.782 41 H 0.218 0.782 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.822 -12.145 -13.883 24.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.185 4.185 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.177 1.177 7 C -0.528 4.528 8 H 0.102 0.898 9 C 0.064 3.936 10 C -0.237 4.237 11 C -0.114 4.114 12 C -0.217 4.217 13 C -0.143 4.143 14 C 0.355 3.645 15 O -0.466 6.466 16 N -0.366 5.366 17 C -0.009 4.009 18 C -0.006 4.006 19 N -0.349 5.349 20 C 0.361 3.639 21 O -0.434 6.434 22 C -0.130 4.130 23 C -0.056 4.056 24 N -0.176 5.176 25 C -0.075 4.075 26 C -0.106 4.106 27 N -0.146 5.146 28 C -0.151 4.151 29 H 0.097 0.903 30 H 0.126 0.874 31 H 0.156 0.844 32 H 0.156 0.844 33 H 0.254 0.746 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.258 0.742 39 H 0.198 0.802 40 H 0.235 0.765 41 H 0.235 0.765 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.978 -12.050 -13.808 24.983 hybrid contribution 0.338 1.053 0.217 1.127 sum -16.640 -10.997 -13.591 24.136 Atomic orbital electron populations 1.69879 1.09207 1.30690 1.35232 1.26847 0.95420 1.04924 0.91332 0.85248 0.78721 0.75499 0.80260 1.18511 1.19639 1.17676 1.19843 0.98617 0.92266 1.42041 0.89824 1.17949 0.91857 0.93900 0.89928 1.21419 1.03928 0.92813 1.05527 1.20933 0.95383 0.97696 0.97417 1.20882 1.00430 0.95190 1.05169 1.19752 0.97021 0.95534 1.01974 1.18653 0.83094 0.83373 0.79407 1.90683 1.67247 1.31665 1.56998 1.45478 1.30546 1.09064 1.51463 1.21349 0.87860 0.96637 0.95092 1.21411 0.87886 0.95646 0.95618 1.45547 1.29736 1.09811 1.49851 1.17823 0.82314 0.83851 0.79864 1.90808 1.66100 1.30512 1.55993 1.21871 0.98221 0.91974 1.00963 1.23862 0.90471 0.99467 0.91768 1.68705 1.10482 1.30076 1.08352 1.24903 0.99595 0.87842 0.95192 1.24612 0.90623 1.02366 0.93006 1.68333 1.11864 1.26933 1.07492 1.21445 0.98264 0.96476 0.98955 0.90262 0.87423 0.84389 0.84367 0.74587 0.90926 0.91205 0.89742 0.89562 0.74240 0.80154 0.76503 0.76549 0.88216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.79 10.96 21.82 0.24 -45.55 16 2 C 0.03 1.55 5.14 85.25 0.44 1.99 16 3 Si 0.98 39.45 29.60 68.60 2.03 41.48 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 5 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 6 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 7 C -0.50 -27.08 9.05 23.47 0.21 -26.87 16 8 H 0.08 4.28 7.91 -2.91 -0.02 4.26 16 9 C 0.07 3.57 5.57 -21.32 -0.12 3.45 16 10 C -0.22 -10.08 9.78 22.77 0.22 -9.86 16 11 C -0.10 -3.76 10.01 22.18 0.22 -3.54 16 12 C -0.20 -7.54 9.55 22.70 0.22 -7.32 16 13 C -0.14 -6.46 5.87 -20.13 -0.12 -6.58 16 14 C 0.56 23.86 7.77 86.80 0.67 24.54 16 15 O -0.58 -29.35 16.33 -3.87 -0.06 -29.41 16 16 N -0.71 -20.78 5.51 -465.94 -2.57 -23.34 16 17 C 0.11 2.70 5.79 86.38 0.50 3.20 16 18 C 0.12 2.20 5.79 86.38 0.50 2.70 16 19 N -0.70 -12.70 5.55 -465.68 -2.58 -15.28 16 20 C 0.58 12.16 7.81 86.88 0.68 12.84 16 21 O -0.56 -14.69 16.35 -3.76 -0.06 -14.75 16 22 C 0.01 0.16 6.75 41.89 0.28 0.44 16 23 C 0.10 1.70 10.77 84.95 0.92 2.61 16 24 N -0.46 -6.55 10.49 -194.12 -2.04 -8.59 16 25 C 0.09 0.60 11.23 84.77 0.95 1.56 16 26 C 0.06 0.42 11.22 84.82 0.95 1.37 16 27 N -0.43 -6.18 9.71 -184.33 -1.79 -7.97 16 28 C -0.13 -7.20 8.24 23.01 0.19 -7.01 16 29 H 0.29 14.69 8.30 -92.71 -0.77 13.92 16 30 H 0.11 4.62 8.06 -2.91 -0.02 4.60 16 31 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 32 H 0.14 3.91 6.38 -2.91 -0.02 3.89 16 33 H 0.42 9.70 6.49 -92.71 -0.60 9.10 16 34 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.42 6.65 7.82 -92.71 -0.73 5.92 16 39 H 0.18 2.85 7.65 -2.91 -0.02 2.83 16 40 H 0.22 -0.41 8.06 -2.91 -0.02 -0.43 16 41 H 0.22 -0.21 8.06 -2.91 -0.02 -0.24 16 42 H 0.10 6.11 5.74 -2.91 -0.02 6.09 16 Total: -1.00 -77.13 371.24 -0.34 -77.47 By element: Atomic # 1 Polarization: 32.66 SS G_CDS: -0.23 Total: 32.43 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: 6.72 Total: -6.48 kcal Atomic # 7 Polarization: -92.00 SS G_CDS: -8.74 Total: -100.74 kcal Atomic # 8 Polarization: -44.04 SS G_CDS: -0.12 Total: -44.17 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 2.03 Total: 41.48 kcal Total: -77.13 -0.34 -77.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338661537.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.364 kcal (2) G-P(sol) polarization free energy of solvation -77.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds