Wall clock time and date at job start Tue Mar 31 2020 23:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99910 * 2 1 4 4 H 1.48499 * 109.47104 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47176 * 300.00026 * 3 2 1 6 6 H 1.48498 * 109.46993 * 59.99782 * 3 2 1 7 7 C 1.37876 * 120.00226 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00240 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99895 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47285 * 179.97438 * 9 7 2 11 11 C 1.46490 * 120.00245 * 275.00716 * 10 9 7 12 12 C 1.50706 * 109.46749 * 274.99536 * 11 10 9 13 13 C 1.38220 * 119.61941 * 94.73267 * 12 11 10 14 14 C 1.38634 * 119.16442 * 179.70914 * 13 12 11 15 15 C 1.38677 * 118.41461 * 0.55070 * 14 13 12 16 16 C 1.38179 * 119.16330 * 359.72760 * 15 14 13 17 17 N 1.31855 * 119.61947 * 274.99853 * 12 11 10 18 18 S 1.65602 * 119.99652 * 95.00062 * 10 9 7 19 19 O 1.42108 * 104.27708 * 333.93459 * 18 10 9 20 20 O 1.42094 * 104.27783 * 206.07487 * 18 10 9 21 21 C 1.81403 * 104.44967 * 90.00189 * 18 10 9 22 22 C 1.52995 * 109.47062 * 179.97438 * 21 18 10 23 23 H 1.08999 * 110.83239 * 308.64978 * 22 21 18 24 24 C 1.54813 * 110.90744 * 184.99996 * 22 21 18 25 25 C 1.54098 * 104.30472 * 220.98959 * 24 22 21 26 26 O 1.43744 * 107.29564 * 357.90152 * 25 24 22 27 27 C 1.44373 * 106.97248 * 26.51652 * 26 25 24 28 28 H 0.96998 * 120.00626 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47204 * 59.99931 * 9 7 2 30 30 H 1.09000 * 109.47209 * 300.00173 * 9 7 2 31 31 H 1.08998 * 109.47764 * 34.99612 * 11 10 9 32 32 H 1.09003 * 109.47514 * 155.00203 * 11 10 9 33 33 H 1.08003 * 120.41810 * 359.97438 * 13 12 11 34 34 H 1.07998 * 120.79062 * 180.25458 * 14 13 12 35 35 H 1.07996 * 120.41395 * 179.70778 * 15 14 13 36 36 H 1.08000 * 119.61206 * 179.97438 * 16 15 14 37 37 H 1.08993 * 109.46613 * 59.99869 * 21 18 10 38 38 H 1.09005 * 109.47066 * 300.00157 * 21 18 10 39 39 H 1.09002 * 110.48794 * 102.24504 * 24 22 21 40 40 H 1.09002 * 110.48657 * 339.72926 * 24 22 21 41 41 H 1.08999 * 109.88182 * 117.33024 * 25 24 22 42 42 H 1.08997 * 109.87763 * 238.47782 * 25 24 22 43 43 H 1.09002 * 110.62093 * 78.43762 * 27 26 25 44 44 H 1.09000 * 110.61773 * 201.43358 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.7633 -4.0975 -1.2632 12 6 1.8180 -5.0951 -1.8817 13 6 0.8990 -4.6723 -2.8235 14 6 0.0380 -5.5991 -3.3908 15 6 0.1265 -6.9204 -2.9792 16 6 1.0669 -7.2679 -2.0283 17 7 1.8738 -6.3602 -1.5143 18 16 2.6461 -4.3232 1.4293 19 8 2.4609 -3.3025 2.4005 20 8 3.9353 -4.8610 1.1684 21 6 1.4371 -5.6546 1.6667 22 6 1.7438 -6.3957 2.9696 23 1 2.7904 -6.6981 3.0064 24 6 0.8091 -7.6175 3.1434 25 6 0.4334 -7.5998 4.6378 26 8 1.1383 -6.5028 5.2428 27 6 1.3744 -5.5291 4.2033 28 1 -0.4851 0.8400 0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 2.9027 -3.2583 -1.9447 32 1 3.7243 -4.5761 -1.0749 33 1 0.8550 -3.6339 -3.1170 34 1 -0.6875 -5.2983 -4.1321 35 1 -0.5316 -7.6682 -3.3964 36 1 1.1417 -8.2947 -1.7021 37 1 1.4952 -6.3514 0.8305 38 1 0.4344 -5.2302 1.7170 39 1 1.3350 -8.5388 2.8931 40 1 -0.0816 -7.5075 2.5248 41 1 -0.6414 -7.4558 4.7482 42 1 0.7338 -8.5369 5.1065 43 1 0.4717 -4.9504 4.0072 44 1 2.2014 -4.8724 4.4732 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341440421.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:19 Heat of formation + Delta-G solvation = -77.424509 kcal Electronic energy + Delta-G solvation = -28708.044034 eV Core-core repulsion = 24752.811078 eV Total energy + Delta-G solvation = -3955.232955 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.11064 -39.45207 -36.50494 -35.92292 -35.25446 -33.76203 -32.80852 -32.32026 -31.20997 -29.96328 -27.66389 -26.68830 -25.47612 -23.48252 -22.73217 -22.60840 -21.66299 -20.73201 -18.29252 -17.31404 -17.02347 -16.60007 -16.35229 -16.10381 -15.93036 -15.66868 -15.35947 -15.21901 -15.09491 -14.53940 -14.05108 -13.97006 -13.47622 -13.30359 -13.13630 -12.94045 -12.49691 -12.35932 -12.28159 -12.13198 -11.80934 -11.60491 -11.58512 -11.43625 -11.19358 -11.11441 -11.05785 -10.80130 -10.71467 -10.57852 -10.20688 -10.05151 -9.81714 -9.78743 -9.71902 -9.39509 -8.96172 -8.47297 -8.15604 -6.09177 -4.12401 0.80576 1.16516 1.32912 3.26164 3.29985 3.38536 3.44589 3.80476 3.91474 4.27407 4.31872 4.42629 4.44463 4.55545 4.67898 4.84529 4.85928 4.87684 4.97310 5.10946 5.14258 5.18079 5.22879 5.26222 5.45036 5.54352 5.59960 5.62149 5.65905 5.72146 5.80888 5.83748 5.88399 6.03657 6.10237 6.18351 6.24466 6.38313 6.75471 6.76556 7.12607 7.30677 7.49643 7.88848 8.04047 8.16716 8.90778 9.53012 10.99557 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008411 B = 0.005389 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3328.356793 B = 5194.222966 C = 7484.352085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.062 3.938 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.523 4.523 8 H 0.063 0.937 9 C 0.254 3.746 10 N -0.977 5.977 11 C 0.168 3.832 12 C 0.113 3.887 13 C -0.145 4.145 14 C -0.077 4.077 15 C -0.179 4.179 16 C 0.092 3.908 17 N -0.484 5.484 18 S 2.604 3.396 19 O -0.935 6.935 20 O -0.966 6.966 21 C -0.635 4.635 22 C -0.109 4.109 23 H 0.097 0.903 24 C -0.142 4.142 25 C 0.044 3.956 26 O -0.375 6.375 27 C 0.036 3.964 28 H 0.263 0.737 29 H 0.036 0.964 30 H 0.038 0.962 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.142 0.858 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.152 0.848 37 H 0.142 0.858 38 H 0.128 0.872 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.137 -16.577 -2.927 16.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.140 4.140 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.208 1.208 7 C -0.562 4.562 8 H 0.081 0.919 9 C 0.133 3.867 10 N -0.814 5.814 11 C 0.041 3.959 12 C -0.026 4.026 13 C -0.166 4.166 14 C -0.103 4.103 15 C -0.199 4.199 16 C -0.065 4.065 17 N -0.194 5.194 18 S 2.696 3.304 19 O -0.925 6.925 20 O -0.957 6.957 21 C -0.761 4.761 22 C -0.129 4.129 23 H 0.115 0.885 24 C -0.181 4.181 25 C -0.033 4.033 26 O -0.293 6.293 27 C -0.040 4.040 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.160 0.840 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.169 0.831 37 H 0.160 0.840 38 H 0.146 0.854 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.077 0.923 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.908 -16.403 -1.525 16.498 hybrid contribution -1.233 0.710 -1.317 1.939 sum -2.141 -15.693 -2.842 16.091 Atomic orbital electron populations 1.69923 1.05992 1.26996 1.50750 1.24913 0.94861 0.99242 0.94940 0.86471 0.80299 0.83318 0.77557 1.19548 1.21052 1.20833 1.21496 0.93767 0.90348 1.50632 0.91854 1.19125 0.87011 0.82243 0.98336 1.57496 1.60111 1.44870 1.18878 1.20122 0.94074 0.94768 0.86986 1.22099 0.95767 0.91459 0.93298 1.22159 0.95654 1.01391 0.97359 1.21622 0.97534 0.93066 0.98087 1.22080 1.00726 0.97192 0.99930 1.22691 0.91412 0.98806 0.93587 1.67499 1.23868 1.01966 1.26085 1.05205 0.75671 0.75229 0.74329 1.93638 1.86446 1.52691 1.59739 1.93515 1.36037 1.81601 1.84508 1.30845 1.20000 1.20070 1.05218 1.22432 1.01569 0.96231 0.92641 0.88504 1.22958 0.99970 0.98299 0.96852 1.23188 0.96673 0.90957 0.92457 1.88873 1.77274 1.30185 1.33000 1.24015 1.02596 0.91515 0.85907 0.92772 0.94623 0.94417 0.87671 0.88126 0.84000 0.84973 0.85229 0.83100 0.84032 0.85401 0.90066 0.90159 0.92267 0.89800 0.90723 0.87651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.33 13.29 55.43 0.74 -24.59 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.38 29.54 -169.99 -5.02 16.35 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -14.09 9.38 -34.44 -0.32 -14.41 16 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.25 6.03 5.01 -5.19 -0.03 6.00 16 10 N -0.98 -19.56 2.68 -116.95 -0.31 -19.87 16 11 C 0.17 2.89 5.96 -5.20 -0.03 2.86 16 12 C 0.11 1.72 6.36 -82.59 -0.53 1.20 16 13 C -0.15 -1.98 9.63 -39.44 -0.38 -2.36 16 14 C -0.08 -0.86 10.18 -39.27 -0.40 -1.26 16 15 C -0.18 -1.82 10.11 -39.44 -0.40 -2.22 16 16 C 0.09 1.05 11.18 -17.55 -0.20 0.86 16 17 N -0.48 -6.96 8.72 -9.48 -0.08 -7.05 16 18 S 2.60 50.71 5.24 -107.50 -0.56 50.14 16 19 O -0.93 -21.43 16.05 -57.54 -0.92 -22.36 16 20 O -0.97 -20.06 16.53 -57.54 -0.95 -21.01 16 21 C -0.63 -9.46 5.56 37.16 0.21 -9.25 16 22 C -0.11 -1.49 3.10 -88.49 -0.27 -1.76 16 23 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 24 C -0.14 -1.53 6.59 -25.20 -0.17 -1.69 16 25 C 0.04 0.48 7.70 37.73 0.29 0.78 16 26 O -0.37 -5.44 11.52 -35.23 -0.41 -5.84 16 27 C 0.04 0.54 6.43 38.34 0.25 0.78 16 28 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 29 H 0.04 0.84 8.02 -51.93 -0.42 0.42 16 30 H 0.04 0.96 7.61 -51.93 -0.40 0.56 16 31 H 0.11 1.73 8.01 -51.93 -0.42 1.32 16 32 H 0.10 1.72 6.82 -51.93 -0.35 1.36 16 33 H 0.14 1.91 8.06 -52.48 -0.42 1.49 16 34 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.15 1.28 8.06 -52.49 -0.42 0.85 16 37 H 0.14 1.99 6.52 -51.93 -0.34 1.65 16 38 H 0.13 1.81 7.99 -51.92 -0.41 1.39 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.80 7.86 -51.93 -0.41 0.39 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 1.09 7.93 -51.93 -0.41 0.68 16 44 H 0.11 1.62 7.79 -51.93 -0.40 1.21 16 LS Contribution 376.99 15.07 5.68 5.68 Total: -1.00 -33.35 376.99 -10.40 -43.75 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.49 Total: 3.66 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -2.07 Total: -18.87 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: 0.34 Total: -51.51 kcal Atomic # 8 Polarization: -46.93 SS G_CDS: -2.28 Total: -49.21 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 50.71 SS G_CDS: -0.56 Total: 50.14 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.35 -10.40 -43.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341440421.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.674 kcal (2) G-P(sol) polarization free energy of solvation -33.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds