Wall clock time and date at job start Tue Mar 31 2020 23:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99932 * 2 1 4 4 H 1.48507 * 109.46900 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47397 * 300.00448 * 3 2 1 6 6 H 1.48500 * 109.47374 * 60.00813 * 3 2 1 7 7 C 1.37875 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99754 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47079 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00345 * 85.00200 * 10 9 7 12 12 C 1.50701 * 109.46992 * 274.99969 * 11 10 9 13 13 C 1.38674 * 120.41726 * 269.72135 * 12 11 10 14 14 C 1.38629 * 118.41289 * 179.78270 * 13 12 11 15 15 C 1.38223 * 119.16630 * 0.47261 * 14 13 12 16 16 N 1.31850 * 120.76177 * 359.76608 * 15 14 13 17 17 C 1.31885 * 121.72831 * 0.02562 * 16 15 14 18 18 S 1.65605 * 119.99873 * 265.00173 * 10 9 7 19 19 O 1.42098 * 104.27771 * 26.06905 * 18 10 9 20 20 O 1.42097 * 104.27570 * 153.92862 * 18 10 9 21 21 C 1.81397 * 104.45020 * 269.99839 * 18 10 9 22 22 C 1.53001 * 109.47267 * 179.97438 * 21 18 10 23 23 H 1.09000 * 110.80134 * 308.62609 * 22 21 18 24 24 C 1.54811 * 110.90572 * 185.00229 * 22 21 18 25 25 C 1.54101 * 104.18656 * 220.91928 * 24 22 21 26 26 O 1.43744 * 107.29201 * 357.97199 * 25 24 22 27 27 C 1.44374 * 106.97505 * 26.51289 * 26 25 24 28 28 H 0.97003 * 120.00108 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47235 * 60.00481 * 9 7 2 30 30 H 1.09000 * 109.47642 * 300.00197 * 9 7 2 31 31 H 1.09002 * 109.47391 * 154.99959 * 11 10 9 32 32 H 1.09001 * 109.46813 * 35.00015 * 11 10 9 33 33 H 1.07995 * 120.79070 * 0.02562 * 13 12 11 34 34 H 1.08008 * 120.41675 * 180.26373 * 14 13 12 35 35 H 1.08002 * 119.61718 * 179.75046 * 15 14 13 36 36 H 1.07999 * 119.61845 * 179.97438 * 17 16 15 37 37 H 1.08996 * 109.47388 * 300.00192 * 21 18 10 38 38 H 1.09007 * 109.47215 * 59.99916 * 21 18 10 39 39 H 1.08992 * 110.49115 * 339.59957 * 24 22 21 40 40 H 1.09004 * 110.48816 * 102.11608 * 24 22 21 41 41 H 1.09000 * 109.87875 * 117.39533 * 25 24 22 42 42 H 1.08999 * 109.88227 * 238.54690 * 25 24 22 43 43 H 1.09007 * 110.61826 * 201.43622 * 27 26 25 44 44 H 1.08994 * 110.62093 * 78.44278 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.7630 -4.0976 1.2633 12 6 3.9612 -3.2626 1.6350 13 6 5.2301 -3.6272 1.2105 14 6 6.3022 -2.8265 1.5726 15 6 6.0739 -1.7049 2.3475 16 7 4.8539 -1.3915 2.7373 17 6 3.8102 -2.1275 2.4083 18 16 2.6460 -4.3232 -1.4293 19 8 2.4610 -3.3025 -2.4005 20 8 3.9351 -4.8610 -1.1682 21 6 1.4371 -5.6545 -1.6667 22 6 1.7431 -6.3948 -2.9703 23 1 1.8406 -5.6942 -3.7996 24 6 0.6581 -7.4577 -3.2698 25 6 1.4520 -8.6717 -3.7900 26 8 2.8383 -8.2932 -3.8231 27 6 3.0182 -7.2640 -2.8266 28 1 -0.4850 0.8401 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6246 -2.5571 0.8896 31 1 3.0664 -5.1385 1.1507 32 1 2.0097 -4.0215 2.0474 33 1 5.3788 -4.5116 0.6088 34 1 7.3038 -3.0778 1.2561 35 1 6.9044 -1.0782 2.6372 36 1 2.8259 -1.8392 2.7467 37 1 1.4950 -6.3513 -0.8306 38 1 0.4343 -5.2301 -1.7171 39 1 0.1168 -7.7172 -2.3600 40 1 -0.0312 -7.0950 -4.0323 41 1 1.3151 -9.5194 -3.1187 42 1 1.1151 -8.9327 -4.7932 43 1 3.9103 -6.6750 -3.0398 44 1 3.0747 -7.7007 -1.8296 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341507535.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:31 Heat of formation + Delta-G solvation = -77.054279 kcal Electronic energy + Delta-G solvation = -28694.708899 eV Core-core repulsion = 24739.491998 eV Total energy + Delta-G solvation = -3955.216901 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.64773 -39.61758 -36.66315 -36.04349 -35.37606 -33.93351 -32.79810 -31.77638 -30.89018 -30.11944 -27.58913 -26.83118 -25.23079 -23.02575 -22.88774 -22.50196 -21.50480 -20.90600 -18.40126 -17.37342 -16.95791 -16.67386 -16.39472 -16.08746 -15.87682 -15.56728 -15.37133 -15.24436 -14.78106 -14.56177 -14.14350 -13.66143 -13.26303 -13.20735 -13.04667 -12.66087 -12.56789 -12.45905 -12.34493 -12.28333 -11.76079 -11.71924 -11.61086 -11.52384 -11.29383 -11.22970 -11.05349 -10.94827 -10.68501 -10.59737 -10.31436 -10.00502 -9.91114 -9.75494 -9.27152 -8.95076 -8.55164 -8.39853 -8.12630 -6.07630 -4.09257 0.62356 1.62943 1.84475 3.19724 3.34319 3.41584 3.50741 3.65400 4.12051 4.23777 4.33551 4.39364 4.46596 4.56753 4.67669 4.83656 4.95821 4.97719 4.99407 5.09698 5.24668 5.29472 5.36787 5.38348 5.45286 5.49352 5.53219 5.59480 5.60618 5.70071 5.72049 5.85684 5.88659 6.01605 6.23478 6.36769 6.59785 6.63919 6.82623 7.06504 7.25021 7.28242 7.45925 7.91166 8.17312 8.52871 8.93704 9.56552 11.01082 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012545 B = 0.004418 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.507017 B = 6336.053497 C = 7834.192339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.066 3.934 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.515 4.515 8 H 0.061 0.939 9 C 0.254 3.746 10 N -0.981 5.981 11 C 0.179 3.821 12 C -0.148 4.148 13 C -0.060 4.060 14 C -0.190 4.190 15 C 0.091 3.909 16 N -0.494 5.494 17 C 0.146 3.854 18 S 2.600 3.400 19 O -0.932 6.932 20 O -0.967 6.967 21 C -0.636 4.636 22 C -0.113 4.113 23 H 0.099 0.901 24 C -0.145 4.145 25 C 0.044 3.956 26 O -0.375 6.375 27 C 0.039 3.961 28 H 0.262 0.738 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.144 0.856 34 H 0.126 0.874 35 H 0.145 0.855 36 H 0.158 0.842 37 H 0.128 0.872 38 H 0.137 0.863 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.060 0.940 42 H 0.085 0.915 43 H 0.105 0.895 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.823 -15.941 -0.104 16.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.136 4.136 3 Si 0.718 3.282 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.555 4.555 8 H 0.079 0.921 9 C 0.132 3.868 10 N -0.819 5.819 11 C 0.052 3.948 12 C -0.152 4.152 13 C -0.087 4.087 14 C -0.210 4.210 15 C -0.066 4.066 16 N -0.203 5.203 17 C -0.011 4.011 18 S 2.692 3.308 19 O -0.922 6.922 20 O -0.957 6.957 21 C -0.762 4.762 22 C -0.133 4.133 23 H 0.117 0.883 24 C -0.183 4.183 25 C -0.033 4.033 26 O -0.293 6.293 27 C -0.038 4.038 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.162 0.838 34 H 0.144 0.856 35 H 0.162 0.838 36 H 0.175 0.825 37 H 0.147 0.853 38 H 0.155 0.845 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.078 0.922 42 H 0.103 0.897 43 H 0.123 0.877 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.368 -14.920 -0.275 15.298 hybrid contribution -0.325 0.141 -0.279 0.451 sum 3.043 -14.779 -0.553 15.099 Atomic orbital electron populations 1.69911 1.05921 1.26954 1.50887 1.24849 0.94762 0.99090 0.94946 0.86540 0.80511 0.83662 0.77474 1.19639 1.21042 1.20867 1.21431 0.93574 0.90172 1.50277 0.92079 1.19163 0.86792 0.82458 0.98369 1.57601 1.59356 1.45629 1.19344 1.19884 0.92656 0.94927 0.87354 1.21171 0.95620 0.98852 0.99549 1.21745 0.91912 0.99516 0.95518 1.22015 0.99865 0.97570 1.01589 1.22644 0.94652 0.94701 0.94618 1.67697 0.99447 1.30440 1.22703 1.22698 0.97372 0.88837 0.92190 1.05361 0.75638 0.75371 0.74476 1.93649 1.86231 1.52317 1.60012 1.93497 1.35778 1.81759 1.84681 1.30851 1.21049 1.19752 1.04539 1.22444 0.96718 0.98149 0.95982 0.88262 1.22992 0.98143 0.94585 1.02611 1.23200 0.81734 0.96595 1.01750 1.88885 1.25761 1.56607 1.58081 1.23929 0.97893 0.88840 0.93133 0.92814 0.94400 0.94438 0.90594 0.89557 0.83811 0.85632 0.83761 0.82482 0.85322 0.84508 0.89978 0.89833 0.92206 0.89661 0.87694 0.91011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.35 13.29 55.43 0.74 -24.61 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 16 4 H -0.27 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.52 -13.68 8.05 -34.44 -0.28 -13.96 16 8 H 0.06 1.70 6.84 -52.49 -0.36 1.35 16 9 C 0.25 5.76 5.03 -5.19 -0.03 5.74 16 10 N -0.98 -17.83 2.72 -116.95 -0.32 -18.15 16 11 C 0.18 2.71 5.46 -5.19 -0.03 2.68 16 12 C -0.15 -2.57 4.83 -104.48 -0.50 -3.08 16 13 C -0.06 -1.00 9.26 -39.28 -0.36 -1.36 16 14 C -0.19 -2.95 10.11 -39.44 -0.40 -3.35 16 15 C 0.09 1.50 11.18 -17.55 -0.20 1.30 16 16 N -0.49 -9.53 10.36 -13.25 -0.14 -9.66 16 17 C 0.15 2.77 9.22 -17.55 -0.16 2.61 16 18 S 2.60 44.26 5.18 -107.50 -0.56 43.70 16 19 O -0.93 -20.63 16.99 -57.54 -0.98 -21.60 16 20 O -0.97 -16.41 13.95 -57.54 -0.80 -17.21 16 21 C -0.64 -7.54 5.55 37.16 0.21 -7.33 16 22 C -0.11 -1.31 3.09 -88.61 -0.27 -1.59 16 23 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 24 C -0.14 -1.33 6.60 -25.20 -0.17 -1.49 16 25 C 0.04 0.41 7.70 37.73 0.29 0.70 16 26 O -0.37 -4.66 11.52 -35.23 -0.41 -5.07 16 27 C 0.04 0.46 6.41 38.21 0.24 0.70 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.04 0.92 7.61 -51.93 -0.40 0.52 16 30 H 0.04 0.85 8.00 -51.93 -0.42 0.43 16 31 H 0.08 0.90 7.56 -51.93 -0.39 0.51 16 32 H 0.09 1.15 7.95 -51.93 -0.41 0.74 16 33 H 0.14 2.24 6.60 -52.49 -0.35 1.90 16 34 H 0.13 1.56 8.06 -52.48 -0.42 1.13 16 35 H 0.15 1.93 8.06 -52.49 -0.42 1.50 16 36 H 0.16 2.97 8.06 -52.49 -0.42 2.55 16 37 H 0.13 1.17 7.98 -51.93 -0.41 0.75 16 38 H 0.14 1.53 8.14 -51.92 -0.42 1.11 16 39 H 0.08 0.65 7.86 -51.93 -0.41 0.24 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.10 1.29 7.77 -51.93 -0.40 0.88 16 44 H 0.07 0.75 7.93 -51.93 -0.41 0.34 16 LS Contribution 372.11 15.07 5.61 5.61 Total: -1.00 -34.07 372.11 -10.10 -44.18 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -6.48 Total: 2.23 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -1.75 Total: -16.70 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: 0.28 Total: -52.42 kcal Atomic # 8 Polarization: -41.70 SS G_CDS: -2.19 Total: -43.88 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Atomic # 16 Polarization: 44.26 SS G_CDS: -0.56 Total: 43.70 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.07 -10.10 -44.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341507535.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.879 kcal (2) G-P(sol) polarization free energy of solvation -34.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds