Wall clock time and date at job start Tue Mar 31 2020 23:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00074 * 2 1 4 4 H 1.48503 * 109.46969 * 269.99822 * 3 2 1 5 5 H 1.48499 * 109.46859 * 29.99791 * 3 2 1 6 6 H 1.48502 * 109.47114 * 149.99980 * 3 2 1 7 7 C 1.37880 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00091 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99816 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47192 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46985 * 179.97438 * 10 9 7 12 12 S 1.81409 * 109.46702 * 179.97438 * 11 10 9 13 13 O 1.42098 * 110.54336 * 68.37489 * 12 11 10 14 14 O 1.42099 * 110.54047 * 291.62224 * 12 11 10 15 15 N 1.65599 * 104.44787 * 180.02562 * 12 11 10 16 16 C 1.46497 * 120.00548 * 64.99622 * 15 12 11 17 17 H 1.09005 * 110.53525 * 337.62223 * 16 15 12 18 18 C 1.54806 * 110.48761 * 100.22924 * 16 15 12 19 19 C 1.55001 * 102.09240 * 139.55865 * 18 16 15 20 20 O 1.44379 * 103.48941 * 322.98223 * 19 18 16 21 21 C 1.43747 * 106.97790 * 40.05669 * 20 19 18 22 22 H 1.09001 * 110.00559 * 92.97875 * 21 20 19 23 23 C 1.50697 * 109.87862 * 214.06200 * 21 20 19 24 24 C 1.38676 * 120.41398 * 217.80448 * 23 21 20 25 25 C 1.38629 * 118.41631 * 179.75512 * 24 23 21 26 26 C 1.38230 * 119.16240 * 0.55670 * 25 24 23 27 27 N 1.31858 * 120.76104 * 359.43175 * 26 25 24 28 28 C 1.31887 * 121.72468 * 0.27879 * 27 26 25 29 29 H 0.96999 * 120.00156 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47696 * 59.99905 * 9 7 2 31 31 H 1.09003 * 109.47125 * 299.99760 * 9 7 2 32 32 H 1.09006 * 109.46922 * 59.99605 * 10 9 7 33 33 H 1.09003 * 109.46727 * 299.99804 * 10 9 7 34 34 H 1.09000 * 109.47077 * 60.00286 * 11 10 9 35 35 H 1.08991 * 109.47044 * 299.99665 * 11 10 9 36 36 H 0.96996 * 119.99877 * 245.00414 * 15 12 11 37 37 H 1.08999 * 110.91579 * 257.76218 * 18 16 15 38 38 H 1.09004 * 110.90529 * 21.33490 * 18 16 15 39 39 H 1.09001 * 110.61115 * 81.47913 * 19 18 16 40 40 H 1.08993 * 110.62014 * 204.47867 * 19 18 16 41 41 H 1.08000 * 120.79248 * 0.05071 * 24 23 21 42 42 H 1.07999 * 120.42389 * 180.28670 * 25 24 23 43 43 H 1.08002 * 119.62315 * 179.71361 * 26 25 24 44 44 H 1.07999 * 119.61429 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4802 -4.9871 -0.0020 12 16 2.6591 -6.3659 -0.0025 13 8 3.3558 -6.4267 1.2345 14 8 3.3559 -6.4258 -1.2395 15 7 1.7088 -7.7221 -0.0037 16 6 0.8496 -8.0135 -1.1540 17 1 0.6428 -7.1034 -1.7171 18 6 1.5078 -9.0771 -2.0662 19 6 0.2974 -9.9621 -2.4588 20 8 -0.5002 -9.9948 -1.2557 21 6 -0.4645 -8.6727 -0.6925 22 1 -1.3155 -8.0924 -1.0491 23 6 -0.4955 -8.7557 0.8119 24 6 -1.2104 -7.8259 1.5517 25 6 -1.2148 -7.9443 2.9329 26 6 -0.5019 -8.9710 3.5232 27 7 0.1670 -9.8373 2.7878 28 6 0.1887 -9.7588 1.4715 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5564 -0.8919 31 1 0.6240 -2.5575 0.8880 32 1 2.8713 -3.6047 0.8891 33 1 2.8726 -3.6040 -0.8910 34 1 0.8540 -5.0447 -0.8923 35 1 0.8533 -5.0450 0.8877 36 1 1.7208 -8.3235 0.7572 37 1 1.9524 -8.6132 -2.9467 38 1 2.2507 -9.6551 -1.5164 39 1 -0.2609 -9.5075 -3.2772 40 1 0.6269 -10.9655 -2.7282 41 1 -1.7548 -7.0312 1.0633 42 1 -1.7646 -7.2407 3.5405 43 1 -0.4964 -9.0675 4.5989 44 1 0.7475 -10.4870 0.9025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343213793.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:30 Heat of formation + Delta-G solvation = -87.099515 kcal Electronic energy + Delta-G solvation = -28051.672815 eV Core-core repulsion = 24096.020320 eV Total energy + Delta-G solvation = -3955.652495 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.06407 -39.39464 -36.96535 -35.84069 -35.24032 -34.74854 -33.13838 -32.24848 -31.97409 -30.55767 -28.13739 -27.88208 -24.08691 -23.92916 -23.72240 -22.32204 -21.25912 -20.76597 -19.41294 -17.93552 -17.62866 -17.00774 -16.73350 -16.62281 -16.27071 -15.85236 -15.71001 -15.29800 -14.81676 -14.70326 -14.52425 -14.25283 -13.95902 -13.62764 -13.30690 -13.21745 -12.79445 -12.66737 -12.35598 -12.12584 -12.00995 -11.95586 -11.85547 -11.79348 -11.59309 -11.34432 -11.29144 -10.96173 -10.90771 -10.52686 -10.37728 -10.06246 -10.01960 -9.80026 -9.62859 -9.40057 -9.24041 -9.14302 -8.45479 -6.10629 -4.13701 0.35564 0.79255 1.01421 2.69979 3.27212 3.31684 3.33590 3.37675 3.63467 3.80741 4.06280 4.16344 4.25735 4.31344 4.38548 4.50408 4.60952 4.65840 4.68821 4.76264 4.78982 4.88433 5.01445 5.08819 5.13936 5.23953 5.26192 5.36811 5.42744 5.53591 5.67506 5.77009 5.83736 5.85245 5.94940 6.18732 6.36302 6.37336 6.46289 6.71999 6.80056 7.50425 7.60026 7.72285 7.87118 8.27492 8.92349 9.51378 11.00553 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013520 B = 0.003116 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.561274 B = 8984.831823 C = 9662.744221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.032 3.968 10 C -0.105 4.105 11 C -0.608 4.608 12 S 2.593 3.407 13 O -0.959 6.959 14 O -0.958 6.958 15 N -1.114 6.114 16 C 0.128 3.872 17 H 0.109 0.891 18 C -0.169 4.169 19 C 0.044 3.956 20 O -0.364 6.364 21 C 0.116 3.884 22 H 0.094 0.906 23 C -0.133 4.133 24 C -0.066 4.066 25 C -0.167 4.167 26 C 0.098 3.902 27 N -0.482 5.482 28 C 0.110 3.890 29 H 0.262 0.738 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.414 0.586 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.099 0.901 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.158 0.842 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.408 -21.204 -1.178 21.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.007 4.007 10 C -0.145 4.145 11 C -0.740 4.740 12 S 2.689 3.311 13 O -0.950 6.950 14 O -0.948 6.948 15 N -0.873 5.873 16 C 0.019 3.981 17 H 0.127 0.873 18 C -0.208 4.208 19 C -0.032 4.032 20 O -0.283 6.283 21 C 0.056 3.944 22 H 0.111 0.889 23 C -0.135 4.135 24 C -0.092 4.092 25 C -0.187 4.187 26 C -0.058 4.058 27 N -0.190 5.190 28 C -0.047 4.047 29 H 0.071 0.929 30 H 0.039 0.961 31 H 0.039 0.961 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.251 0.749 37 H 0.115 0.885 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.117 0.883 41 H 0.158 0.842 42 H 0.158 0.842 43 H 0.175 0.825 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.239 -21.854 -0.811 22.107 hybrid contribution -0.742 1.844 -0.170 1.995 sum -3.982 -20.009 -0.981 20.425 Atomic orbital electron populations 1.69948 1.06093 1.26822 1.50560 1.25009 0.94884 0.99370 0.95025 0.86558 0.79913 0.83141 0.78225 1.20540 1.21144 1.19715 1.21246 0.93270 0.90868 1.51153 0.92368 1.19055 0.93479 0.90428 0.97688 1.21511 0.99412 0.91544 1.02030 1.30557 1.16371 1.15981 1.11113 1.05555 0.75810 0.75279 0.74448 1.93593 1.70566 1.85763 1.45053 1.93578 1.70070 1.85657 1.45446 1.56049 1.61455 1.42663 1.27175 1.22116 0.89515 0.99988 0.86499 0.87346 1.23666 0.98805 0.97448 1.00913 1.23626 0.90462 1.01364 0.87770 1.88955 1.71586 1.28180 1.39531 1.21804 0.97544 0.85460 0.89614 0.88856 1.20593 0.99695 0.97831 0.95412 1.21497 0.96027 0.97496 0.94157 1.22206 1.01016 1.00067 0.95369 1.22882 0.92088 0.90362 1.00512 1.67777 1.18113 1.26190 1.06918 1.22639 0.95894 0.96036 0.90139 0.92877 0.96137 0.96130 0.91563 0.91521 0.85582 0.85291 0.74867 0.88505 0.89295 0.91362 0.88301 0.84227 0.84202 0.82519 0.82474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.02 13.29 55.43 0.74 -25.29 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -14.57 9.11 -34.44 -0.31 -14.88 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 10 C -0.11 -2.07 5.16 -26.73 -0.14 -2.21 16 11 C -0.61 -8.86 5.99 37.16 0.22 -8.63 16 12 S 2.59 37.50 5.38 -107.50 -0.58 36.92 16 13 O -0.96 -17.17 18.08 -57.54 -1.04 -18.21 16 14 O -0.96 -16.00 17.81 -57.54 -1.02 -17.03 16 15 N -1.11 -12.19 4.77 -3.59 -0.02 -12.21 16 16 C 0.13 1.12 3.45 -66.41 -0.23 0.89 16 17 H 0.11 0.80 7.29 -51.93 -0.38 0.42 16 18 C -0.17 -1.33 6.88 -24.72 -0.17 -1.50 16 19 C 0.04 0.29 7.72 38.21 0.29 0.59 16 20 O -0.36 -3.24 10.48 -35.23 -0.37 -3.61 16 21 C 0.12 0.97 3.65 -27.31 -0.10 0.87 16 22 H 0.09 0.64 8.05 -51.93 -0.42 0.22 16 23 C -0.13 -1.26 3.78 -104.48 -0.39 -1.66 16 24 C -0.07 -0.59 9.83 -39.28 -0.39 -0.97 16 25 C -0.17 -1.47 10.11 -39.44 -0.40 -1.87 16 26 C 0.10 0.96 11.18 -17.54 -0.20 0.76 16 27 N -0.48 -5.55 10.36 -13.25 -0.14 -5.69 16 28 C 0.11 1.16 8.64 -17.55 -0.15 1.01 16 29 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.13 1.53 7.52 -51.92 -0.39 1.14 16 35 H 0.13 1.69 8.14 -51.93 -0.42 1.26 16 36 H 0.41 4.53 5.77 -34.47 -0.20 4.33 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.74 8.06 -51.93 -0.42 0.32 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 44 H 0.16 1.52 7.74 -52.49 -0.41 1.11 16 LS Contribution 376.75 15.07 5.68 5.68 Total: -1.00 -35.81 376.75 -10.37 -46.18 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -6.40 Total: 2.44 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: -2.20 Total: -25.42 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: 0.58 Total: -43.18 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -2.43 Total: -38.85 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 37.50 SS G_CDS: -0.58 Total: 36.92 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.81 -10.37 -46.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343213793.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.916 kcal (2) G-P(sol) polarization free energy of solvation -35.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds