Wall clock time and date at job start Tue Mar 31 2020 23:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86812 * 119.99892 * 2 1 4 4 H 1.48493 * 109.46928 * 269.99773 * 3 2 1 5 5 H 1.48493 * 109.46889 * 30.00153 * 3 2 1 6 6 H 1.48498 * 109.46890 * 149.99974 * 3 2 1 7 7 C 1.37878 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00041 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99614 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.46686 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47396 * 180.02562 * 10 9 7 12 12 S 1.81396 * 109.47404 * 179.97438 * 11 10 9 13 13 O 1.42105 * 110.54243 * 68.37490 * 12 11 10 14 14 O 1.42099 * 110.54446 * 291.62402 * 12 11 10 15 15 N 1.65605 * 104.44927 * 179.97438 * 12 11 10 16 16 C 1.46498 * 119.99526 * 65.00515 * 15 12 11 17 17 H 1.08997 * 110.54260 * 337.61304 * 16 15 12 18 18 C 1.54807 * 110.48854 * 100.23257 * 16 15 12 19 19 C 1.54994 * 102.09494 * 97.79488 * 18 16 15 20 20 O 1.44380 * 103.49110 * 37.01885 * 19 18 16 21 21 C 1.43739 * 106.97820 * 319.94499 * 20 19 18 22 22 H 1.09004 * 109.87903 * 267.08704 * 21 20 19 23 23 C 1.50698 * 109.88141 * 145.93316 * 21 20 19 24 24 C 1.38674 * 120.41701 * 147.16599 * 23 21 20 25 25 C 1.38628 * 118.42093 * 180.02562 * 24 23 21 26 26 C 1.38233 * 119.15851 * 0.02562 * 25 24 23 27 27 N 1.31854 * 120.76361 * 0.02562 * 26 25 24 28 28 C 1.31883 * 121.72576 * 359.70010 * 27 26 25 29 29 H 0.97007 * 119.99934 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.47574 * 60.00824 * 9 7 2 31 31 H 1.08996 * 109.47663 * 299.99672 * 9 7 2 32 32 H 1.08999 * 109.47399 * 60.00147 * 10 9 7 33 33 H 1.09005 * 109.47230 * 300.00325 * 10 9 7 34 34 H 1.08999 * 109.46896 * 59.99631 * 11 10 9 35 35 H 1.09005 * 109.47027 * 300.00242 * 11 10 9 36 36 H 0.96994 * 119.99870 * 244.99802 * 15 12 11 37 37 H 1.09005 * 110.90346 * 215.99223 * 18 16 15 38 38 H 1.09000 * 110.90998 * 339.58958 * 18 16 15 39 39 H 1.08998 * 110.61564 * 278.52047 * 19 18 16 40 40 H 1.08997 * 110.62119 * 155.52521 * 19 18 16 41 41 H 1.08001 * 120.78908 * 0.02957 * 24 23 21 42 42 H 1.07995 * 120.42196 * 180.02562 * 25 24 23 43 43 H 1.08002 * 119.61649 * 180.02562 * 26 25 24 44 44 H 1.07997 * 119.61742 * 180.31416 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0000 10 6 4.0216 -2.6365 0.0001 11 6 5.5515 -2.6365 0.0001 12 16 6.1562 -4.3467 0.0010 13 8 5.8601 -4.9810 -1.2357 14 8 5.8601 -4.9797 1.2383 15 7 7.8059 -4.2017 0.0003 16 6 8.4890 -3.6028 1.1496 17 1 7.8049 -2.9683 1.7130 18 6 9.0821 -4.7041 2.0617 19 6 10.5601 -4.7494 1.5972 20 8 10.8703 -3.3657 1.3255 21 6 9.7165 -2.7945 0.6862 22 1 9.8197 -2.8653 -0.3966 23 6 9.5649 -1.3523 1.0961 24 6 9.0412 -0.4222 0.2110 25 6 8.9206 0.8934 0.6311 26 6 9.3240 1.2320 1.9091 27 7 9.8187 0.3208 2.7237 28 6 9.9430 -0.9407 2.3598 29 1 -0.4850 0.8401 0.0004 30 1 3.8752 -0.6796 0.8894 31 1 3.8746 -0.6807 -0.8905 32 1 3.6579 -3.1505 -0.8896 33 1 3.6585 -3.1502 0.8903 34 1 5.9148 -2.1226 0.8901 35 1 5.9149 -2.1227 -0.8899 36 1 8.3198 -4.5135 -0.7610 37 1 9.0128 -4.4187 3.1114 38 1 8.5898 -5.6608 1.8869 39 1 10.6599 -5.3498 0.6929 40 1 11.1998 -5.1378 2.3896 41 1 8.7344 -0.7158 -0.7821 42 1 8.5165 1.6442 -0.0317 43 1 9.2330 2.2546 2.2442 44 1 10.3480 -1.6597 3.0565 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343213795.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:36 Heat of formation + Delta-G solvation = -115.717536 kcal Electronic energy + Delta-G solvation = -27948.540634 eV Core-core repulsion = 23991.647169 eV Total energy + Delta-G solvation = -3956.893466 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.59675 -40.15383 -38.22942 -37.10465 -36.52774 -35.94434 -34.26693 -33.95187 -32.62385 -31.37133 -30.18370 -28.66274 -25.43015 -24.84853 -24.38731 -23.00208 -22.30565 -22.13985 -20.44383 -18.98343 -18.82146 -18.20866 -18.08870 -17.45062 -17.34746 -17.01782 -16.76628 -16.23059 -15.90950 -15.59693 -15.48485 -15.32240 -14.88363 -14.82225 -14.40926 -14.13887 -14.00382 -13.95339 -13.68905 -13.45973 -13.27445 -13.22573 -13.17479 -12.88564 -12.71397 -12.59324 -12.57886 -12.18170 -12.14707 -11.86077 -11.65609 -11.44405 -11.38597 -10.96770 -10.80919 -10.77983 -10.55286 -10.32232 -9.86988 -8.30342 -6.36447 -0.82218 0.10517 0.33833 1.35737 1.39138 1.50232 1.65234 2.35797 2.66291 2.68938 2.97779 3.05013 3.16565 3.35037 3.48136 3.63060 3.65516 3.80354 3.86657 3.96756 4.01689 4.10304 4.15630 4.16932 4.26077 4.31415 4.44763 4.58928 4.60741 4.78101 4.82469 4.88312 4.91438 4.94366 5.03173 5.10591 5.19730 5.27731 5.32651 5.44735 5.61944 5.73736 5.82432 6.02208 6.24519 6.72065 7.03039 7.28409 8.86664 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010021 B = 0.004081 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2793.353715 B = 6860.156242 C = 9111.559782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.954 3.046 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.238 1.238 7 C -0.544 4.544 8 H 0.029 0.971 9 C -0.003 4.003 10 C -0.103 4.103 11 C -0.612 4.612 12 S 2.623 3.377 13 O -0.988 6.988 14 O -0.986 6.986 15 N -1.095 6.095 16 C 0.121 3.879 17 H 0.103 0.897 18 C -0.172 4.172 19 C 0.046 3.954 20 O -0.376 6.376 21 C 0.127 3.873 22 H 0.110 0.890 23 C -0.151 4.151 24 C -0.069 4.069 25 C -0.172 4.172 26 C 0.085 3.915 27 N -0.515 5.515 28 C 0.107 3.893 29 H 0.267 0.733 30 H 0.029 0.971 31 H 0.033 0.967 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.146 0.854 35 H 0.162 0.838 36 H 0.430 0.570 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.113 0.887 41 H 0.163 0.837 42 H 0.160 0.840 43 H 0.172 0.828 44 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.858 -3.416 0.545 28.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.195 4.195 3 Si 0.776 3.224 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.161 1.161 7 C -0.582 4.582 8 H 0.048 0.952 9 C -0.042 4.042 10 C -0.142 4.142 11 C -0.743 4.743 12 S 2.718 3.282 13 O -0.978 6.978 14 O -0.976 6.976 15 N -0.856 5.856 16 C 0.012 3.988 17 H 0.121 0.879 18 C -0.212 4.212 19 C -0.030 4.030 20 O -0.296 6.296 21 C 0.066 3.934 22 H 0.128 0.872 23 C -0.153 4.153 24 C -0.095 4.095 25 C -0.192 4.192 26 C -0.071 4.071 27 N -0.224 5.224 28 C -0.050 4.050 29 H 0.075 0.925 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.164 0.836 35 H 0.180 0.820 36 H 0.268 0.732 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.096 0.904 40 H 0.131 0.869 41 H 0.180 0.820 42 H 0.177 0.823 43 H 0.189 0.811 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 27.613 -3.747 1.590 27.912 hybrid contribution -0.719 0.796 -1.050 1.501 sum 26.895 -2.951 0.540 27.062 Atomic orbital electron populations 1.70086 1.08570 1.28304 1.52343 1.26111 0.95665 1.03886 0.93875 0.85613 0.79715 0.77608 0.79479 1.18661 1.21343 1.16121 1.21559 0.92418 0.93243 1.51020 0.95248 1.19481 0.93606 0.93414 0.97653 1.21167 0.90371 1.00506 1.02179 1.30536 1.05654 1.24316 1.13826 1.04461 0.73245 0.77467 0.73016 1.93561 1.83570 1.74391 1.46253 1.93559 1.83821 1.73489 1.46726 1.55416 1.24998 1.77389 1.27841 1.22245 0.95507 0.94513 0.86493 0.87911 1.23668 0.96868 0.99916 1.00714 1.23770 0.94902 0.82538 1.01772 1.88943 1.35578 1.24815 1.80215 1.21761 0.84791 0.88213 0.98594 0.87240 1.20819 1.02430 0.96031 0.96054 1.21816 0.94705 0.92507 1.00505 1.22470 1.00910 0.97832 0.97975 1.23256 0.93315 0.99808 0.90757 1.67748 1.14547 1.02798 1.37294 1.22788 0.94920 0.92506 0.94781 0.92454 0.95271 0.94841 0.91666 0.92074 0.83591 0.82029 0.73235 0.88729 0.88964 0.90432 0.86919 0.81982 0.82260 0.81080 0.82154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.60 13.96 21.45 0.30 -59.30 16 2 C 0.00 0.08 5.47 84.66 0.46 0.54 16 3 Si 0.95 42.25 27.47 68.60 1.88 44.13 16 4 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 5 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.24 -9.41 6.54 99.48 0.65 -8.76 16 7 C -0.54 -31.01 9.66 25.60 0.25 -30.76 16 8 H 0.03 1.86 7.99 -2.91 -0.02 1.84 16 9 C 0.00 -0.13 4.04 29.85 0.12 -0.01 16 10 C -0.10 -3.75 5.16 30.60 0.16 -3.59 16 11 C -0.61 -14.57 5.98 71.98 0.43 -14.14 16 12 S 2.62 62.84 5.38 -56.49 -0.30 62.54 16 13 O -0.99 -29.97 18.08 -127.65 -2.31 -32.27 16 14 O -0.99 -30.34 17.82 -127.65 -2.27 -32.62 16 15 N -1.10 -15.77 5.34 -165.28 -0.88 -16.65 16 16 C 0.12 1.70 3.10 45.98 0.14 1.84 16 17 H 0.10 1.52 6.84 -2.39 -0.02 1.50 16 18 C -0.17 -2.26 6.88 31.89 0.22 -2.04 16 19 C 0.05 0.48 7.72 72.66 0.56 1.04 16 20 O -0.38 -5.44 10.32 -148.98 -1.54 -6.98 16 21 C 0.13 1.62 3.44 30.22 0.10 1.72 16 22 H 0.11 0.99 7.71 -2.39 -0.02 0.97 16 23 C -0.15 -2.39 4.81 -19.77 -0.10 -2.48 16 24 C -0.07 -0.97 9.85 22.47 0.22 -0.75 16 25 C -0.17 -2.56 10.11 22.36 0.23 -2.34 16 26 C 0.08 1.52 11.18 84.69 0.95 2.47 16 27 N -0.52 -11.35 10.36 -195.84 -2.03 -13.38 16 28 C 0.11 2.07 10.52 84.67 0.89 2.96 16 29 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 30 H 0.03 1.22 7.20 -2.39 -0.02 1.20 16 31 H 0.03 1.35 7.57 -2.39 -0.02 1.33 16 32 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 34 H 0.15 2.90 7.52 -2.39 -0.02 2.88 16 35 H 0.16 2.83 8.14 -2.39 -0.02 2.81 16 36 H 0.43 4.11 8.65 -96.75 -0.84 3.28 16 37 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 38 H 0.09 1.34 8.06 -2.39 -0.02 1.32 16 39 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 42 H 0.16 1.63 8.06 -2.91 -0.02 1.60 16 43 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 44 H 0.16 2.82 7.60 -2.91 -0.02 2.80 16 Total: -1.00 -81.53 377.89 -2.40 -83.93 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.12 Total: 16.14 kcal Atomic # 6 Polarization: -50.17 SS G_CDS: 4.64 Total: -45.53 kcal Atomic # 7 Polarization: -86.71 SS G_CDS: -2.61 Total: -89.33 kcal Atomic # 8 Polarization: -65.75 SS G_CDS: -6.12 Total: -71.87 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 1.88 Total: 44.13 kcal Atomic # 16 Polarization: 62.84 SS G_CDS: -0.30 Total: 62.54 kcal Total: -81.53 -2.40 -83.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343213795.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.790 kcal (2) G-P(sol) polarization free energy of solvation -81.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds