Wall clock time and date at job start Tue Mar 31 2020 23:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40050 * 119.96295 * 2 1 4 4 C 1.36457 * 119.52614 * 180.02562 * 3 2 1 5 5 C 1.40471 * 119.52422 * 0.05472 * 4 3 2 6 6 N 1.33580 * 119.24491 * 179.97438 * 5 4 3 7 7 C 1.31672 * 121.71208 * 179.97438 * 6 5 4 8 8 C 1.40169 * 119.80745 * 0.06668 * 7 6 5 9 9 C 1.46748 * 120.75325 * 180.23138 * 8 7 6 10 10 O 1.21696 * 119.99533 * 255.29502 * 9 8 7 11 11 N 1.34774 * 119.99972 * 75.29365 * 9 8 7 12 12 C 1.46508 * 119.99625 * 185.24531 * 11 9 8 13 13 C 1.50697 * 109.46867 * 90.00008 * 12 11 9 14 14 H 1.07999 * 120.00437 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99636 * 179.97438 * 13 12 11 16 16 N 1.31523 * 120.00060 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00136 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47216 * 60.00052 * 17 15 13 19 19 H 1.48502 * 109.47399 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47021 * 300.00186 * 17 15 13 21 21 C 1.46493 * 120.00084 * 5.24641 * 11 9 8 22 22 C 1.52998 * 109.47332 * 94.92278 * 21 11 9 23 23 C 1.47203 * 109.47086 * 180.02562 * 22 21 11 24 24 N 7.10024 * 121.92683 * 116.22054 * 2 1 3 25 25 C 1.41593 * 118.49356 * 359.95573 * 8 7 6 26 26 O 1.21856 * 120.60986 * 180.02562 * 25 8 7 27 27 N 1.35068 * 118.77493 * 359.97438 * 25 8 7 28 28 C 1.35319 * 119.96469 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47129 * 269.97203 * 1 2 3 30 30 H 1.09003 * 109.46928 * 29.97400 * 1 2 3 31 31 H 1.09006 * 109.47321 * 149.96905 * 1 2 3 32 32 H 1.07998 * 120.23748 * 0.05615 * 3 2 1 33 33 H 1.07993 * 120.23949 * 180.02562 * 4 3 2 34 34 H 1.07997 * 120.10206 * 180.02562 * 7 6 5 35 35 H 1.08997 * 109.46478 * 209.99975 * 12 11 9 36 36 H 1.09001 * 109.46721 * 329.99586 * 12 11 9 37 37 H 0.97000 * 119.99869 * 180.02562 * 16 15 13 38 38 H 1.09006 * 109.46858 * 214.92265 * 21 11 9 39 39 H 1.09001 * 109.47544 * 334.91922 * 21 11 9 40 40 H 1.09000 * 109.46734 * 299.99702 * 22 21 11 41 41 H 1.08998 * 109.47347 * 59.99824 * 22 21 11 42 42 H 1.07997 * 119.61332 * 359.97141 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2064 1.2133 0.0000 4 6 3.5710 1.2029 -0.0005 5 6 4.2539 -0.0246 -0.0022 6 7 5.5897 -0.0283 -0.0033 7 6 6.2787 -1.1503 -0.0044 8 6 5.6069 -2.3805 -0.0059 9 6 6.3541 -3.6435 -0.0021 10 8 6.4375 -4.3042 -1.0207 11 7 6.9480 -4.0717 1.1295 12 6 7.7888 -5.2713 1.1066 13 6 9.2129 -4.8807 0.8061 14 1 9.4665 -3.8429 0.6483 15 6 10.1924 -5.8484 0.7336 16 7 9.8838 -7.1123 0.9262 17 14 11.9576 -5.3645 0.3603 18 1 12.4485 -4.4351 1.4093 19 1 12.8099 -6.5804 0.3373 20 1 12.0176 -4.6934 -0.9630 21 6 6.7527 -3.3378 2.3821 22 6 5.6083 -3.9744 3.1733 23 6 5.4118 -3.2365 4.4317 24 7 5.2618 -2.6625 5.4061 25 6 4.1910 -2.3770 -0.0053 26 8 3.5679 -3.4242 -0.0061 27 7 3.5438 -1.1914 -0.0027 28 6 2.1829 -1.1723 -0.0005 29 1 -0.3633 -0.0005 1.0276 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5143 32 1 1.6697 2.1505 0.0009 33 1 4.1219 2.1317 -0.0001 34 1 7.3583 -1.1230 -0.0048 35 1 7.7445 -5.7644 2.0776 36 1 7.4285 -5.9529 0.3361 37 1 10.5729 -7.7930 0.8756 38 1 7.6682 -3.3766 2.9725 39 1 6.5073 -2.2992 2.1603 40 1 4.6929 -3.9355 2.5829 41 1 5.8537 -5.0130 3.3952 42 1 1.6360 -2.1036 -0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343299107.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:20 Heat of formation + Delta-G solvation = 15.474067 kcal Electronic energy + Delta-G solvation = -29123.931421 eV Core-core repulsion = 25069.575650 eV Total energy + Delta-G solvation = -4054.355771 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.85353 -40.89978 -39.43938 -38.57106 -38.03079 -36.70761 -35.44717 -34.85525 -33.71892 -32.27140 -31.60806 -29.18798 -28.63562 -26.76980 -25.45071 -24.75060 -24.63940 -24.20696 -21.32920 -19.90178 -19.39402 -18.86812 -18.76766 -18.36938 -18.10922 -17.54745 -17.22911 -16.82370 -16.34425 -15.96729 -15.83177 -15.77977 -15.34032 -15.07912 -14.91956 -14.85364 -14.40247 -14.23646 -14.08778 -13.75584 -13.65168 -13.43213 -13.36743 -13.31390 -13.05978 -12.99343 -12.76194 -12.64928 -12.51001 -12.17997 -12.05415 -11.88526 -11.70352 -11.52775 -11.36956 -10.75379 -10.57669 -10.38242 -9.56713 -8.87230 -8.16551 -6.30116 -1.08855 -0.59329 0.75710 0.84143 1.42340 1.46318 1.47491 1.50115 1.53583 1.63219 1.83081 2.20315 2.45739 2.57406 2.82084 2.90070 3.14711 3.15060 3.34031 3.66096 3.68979 3.77036 3.85636 3.94637 3.98631 4.19662 4.35630 4.40594 4.64794 4.67051 4.75108 4.79550 4.81937 4.87667 4.88542 5.06793 5.09841 5.22303 5.28673 5.33739 5.47046 5.58834 5.85404 6.11200 6.41272 6.41804 6.48630 6.63819 6.78461 7.28855 7.44573 8.90922 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014510 B = 0.003313 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.286494 B = 8449.743216 C = 9065.330267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.102 4.102 3 C 0.002 3.998 4 C -0.132 4.132 5 C 0.373 3.627 6 N -0.547 5.547 7 C 0.243 3.757 8 C -0.377 4.377 9 C 0.590 3.410 10 O -0.587 6.587 11 N -0.587 5.587 12 C 0.260 3.740 13 C -0.543 4.543 14 H 0.062 0.938 15 C 0.009 3.991 16 N -0.928 5.928 17 Si 0.965 3.035 18 H -0.259 1.259 19 H -0.283 1.283 20 H -0.277 1.277 21 C 0.122 3.878 22 C -0.037 4.037 23 C 0.243 3.757 24 N -0.473 5.473 25 C 0.523 3.477 26 O -0.554 6.554 27 N -0.417 5.417 28 C 0.059 3.941 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.074 0.926 32 H 0.208 0.792 33 H 0.198 0.802 34 H 0.186 0.814 35 H 0.037 0.963 36 H 0.000 1.000 37 H 0.266 0.734 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.125 0.875 42 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.583 23.531 0.470 31.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.104 4.104 3 C -0.022 4.022 4 C -0.152 4.152 5 C 0.136 3.864 6 N -0.271 5.271 7 C 0.087 3.913 8 C -0.389 4.389 9 C 0.377 3.623 10 O -0.467 6.467 11 N -0.317 5.317 12 C 0.139 3.861 13 C -0.581 4.581 14 H 0.080 0.920 15 C -0.190 4.190 16 N -0.568 5.568 17 Si 0.789 3.211 18 H -0.183 1.183 19 H -0.209 1.209 20 H -0.202 1.202 21 C -0.003 4.003 22 C -0.078 4.078 23 C -0.074 4.074 24 N -0.151 5.151 25 C 0.328 3.672 26 O -0.435 6.435 27 N -0.115 5.115 28 C -0.064 4.064 29 H 0.111 0.889 30 H 0.125 0.875 31 H 0.092 0.908 32 H 0.225 0.775 33 H 0.215 0.785 34 H 0.203 0.797 35 H 0.055 0.945 36 H 0.018 0.982 37 H 0.075 0.925 38 H 0.116 0.884 39 H 0.108 0.892 40 H 0.124 0.876 41 H 0.143 0.857 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -20.504 23.770 1.423 31.423 hybrid contribution 1.031 -1.987 -0.777 2.370 sum -19.472 21.783 0.647 29.224 Atomic orbital electron populations 1.20909 0.85606 1.05438 1.04620 1.20269 0.99757 0.90553 0.99859 1.22218 0.92809 1.00217 0.86933 1.21501 0.95110 0.94786 1.03797 1.21501 0.88873 0.86478 0.89567 1.68916 1.02256 1.27611 1.28267 1.23252 1.01424 0.84938 0.81640 1.21023 0.92493 0.96114 1.29315 1.17591 0.77622 0.84175 0.82919 1.90733 1.62720 1.58568 1.34660 1.48005 1.47341 1.28728 1.07600 1.18883 0.88297 0.82176 0.96725 1.21710 0.93458 0.94092 1.48848 0.92016 1.25815 1.03639 0.94692 0.94821 1.70051 1.35297 1.01037 1.50386 0.85506 0.78798 0.77780 0.78969 1.18342 1.20856 1.20243 1.21406 0.98394 0.95734 0.84748 1.19703 1.01689 1.00063 0.86389 1.29127 0.91867 0.92552 0.93894 1.81400 1.10287 1.10961 1.12410 1.16846 0.88278 0.82435 0.79601 1.90917 1.69094 1.30056 1.53442 1.44199 1.09185 1.09155 1.48995 1.22584 0.81069 1.03378 0.99379 0.88882 0.87488 0.90754 0.77462 0.78510 0.79745 0.94496 0.98188 0.92517 0.88374 0.89212 0.87598 0.85736 0.80650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.05 10.01 71.24 0.71 0.66 16 2 C -0.10 -0.68 5.85 -20.10 -0.12 -0.80 16 3 C 0.00 0.00 9.75 22.29 0.22 0.22 16 4 C -0.13 -1.14 9.95 22.40 0.22 -0.92 16 5 C 0.37 7.40 7.32 133.84 0.98 8.38 16 6 N -0.55 -13.10 10.28 -191.74 -1.97 -15.07 16 7 C 0.24 7.08 9.93 85.19 0.85 7.93 16 8 C -0.38 -13.75 4.21 -19.76 -0.08 -13.84 16 9 C 0.59 27.39 6.69 86.47 0.58 27.97 16 10 O -0.59 -33.85 16.66 -4.34 -0.07 -33.92 16 11 N -0.59 -25.54 2.46 -830.79 -2.04 -27.58 16 12 C 0.26 13.82 5.22 85.63 0.45 14.27 16 13 C -0.54 -30.52 9.39 25.60 0.24 -30.28 16 14 H 0.06 3.35 7.81 -2.91 -0.02 3.33 16 15 C 0.01 0.54 5.46 84.65 0.46 1.00 16 16 N -0.93 -55.83 13.29 21.45 0.28 -55.55 16 17 Si 0.96 44.46 29.54 68.60 2.03 46.48 16 18 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 C 0.12 3.92 5.32 86.38 0.46 4.38 16 22 C -0.04 -1.03 6.03 28.79 0.17 -0.86 16 23 C 0.24 6.78 15.45 89.39 1.38 8.16 16 24 N -0.47 -14.86 18.57 20.06 0.37 -14.49 16 25 C 0.52 17.91 7.39 85.02 0.63 18.54 16 26 O -0.55 -22.54 16.17 -4.85 -0.08 -22.62 16 27 N -0.42 -9.93 2.76 -477.22 -1.32 -11.24 16 28 C 0.06 0.97 9.70 83.36 0.81 1.78 16 29 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 30 H 0.11 -0.45 8.09 -2.39 -0.02 -0.47 16 31 H 0.07 0.14 8.08 -2.38 -0.02 0.12 16 32 H 0.21 -1.50 8.06 -2.91 -0.02 -1.53 16 33 H 0.20 0.67 8.06 -2.91 -0.02 0.65 16 34 H 0.19 4.91 8.06 -2.91 -0.02 4.89 16 35 H 0.04 1.93 8.07 -2.39 -0.02 1.91 16 36 H 0.00 0.00 7.35 -2.39 -0.02 -0.02 16 37 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 38 H 0.10 3.08 8.11 -2.38 -0.02 3.06 16 39 H 0.09 2.55 5.77 -2.39 -0.01 2.53 16 40 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 41 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 42 H 0.18 3.03 7.32 -2.91 -0.02 3.01 16 Total: -1.00 -90.03 376.20 6.23 -83.80 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: 1.07 Total: 3.60 kcal Atomic # 6 Polarization: 38.63 SS G_CDS: 7.96 Total: 46.59 kcal Atomic # 7 Polarization: -119.26 SS G_CDS: -4.67 Total: -123.93 kcal Atomic # 8 Polarization: -56.39 SS G_CDS: -0.15 Total: -56.54 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -90.03 6.23 -83.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343299107.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.273 kcal (2) G-P(sol) polarization free energy of solvation -90.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds