Wall clock time and date at job start Tue Mar 31 2020 22:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99664 * 2 1 4 4 H 1.48508 * 109.46954 * 269.99705 * 3 2 1 5 5 H 1.48492 * 109.47330 * 29.99841 * 3 2 1 6 6 H 1.48506 * 109.47132 * 150.00137 * 3 2 1 7 7 C 1.37880 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99790 * 359.97438 * 7 2 1 9 9 C 1.50695 * 119.99792 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46923 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.47190 * 55.00387 * 10 9 7 12 12 N 1.46496 * 109.47166 * 295.00133 * 10 9 7 13 13 C 1.34782 * 120.00203 * 155.00098 * 12 10 9 14 14 O 1.21363 * 119.99390 * 359.97438 * 13 12 10 15 15 C 1.49352 * 120.00280 * 179.97438 * 13 12 10 16 16 O 1.21383 * 119.99828 * 359.97438 * 15 13 12 17 17 N 1.34774 * 120.00056 * 180.02562 * 15 13 12 18 18 C 1.39778 * 120.00073 * 185.26685 * 17 15 13 19 19 C 1.39296 * 120.87507 * 32.44850 * 18 17 15 20 20 N 1.32250 * 119.00609 * 180.25671 * 19 18 17 21 21 C 1.31801 * 120.90193 * 359.44289 * 20 19 18 22 22 N 1.31804 * 121.93353 * 0.57393 * 21 20 19 23 23 C 1.32256 * 120.89726 * 359.72003 * 22 21 20 24 24 C 1.50708 * 109.47257 * 174.99883 * 10 9 7 25 25 C 1.38236 * 119.99605 * 79.72655 * 24 10 9 26 26 C 1.38232 * 119.99334 * 179.78988 * 25 24 10 27 27 C 1.38228 * 120.00444 * 0.44174 * 26 25 24 28 28 C 1.38237 * 119.99803 * 359.81424 * 27 26 25 29 29 C 1.38231 * 120.00186 * 359.97274 * 28 27 26 30 30 H 0.96989 * 120.00542 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.47686 * 60.00419 * 9 7 2 32 32 H 1.08999 * 109.47374 * 299.99466 * 9 7 2 33 33 H 0.96998 * 120.00114 * 334.99860 * 12 10 9 34 34 H 0.97003 * 120.00277 * 5.26285 * 17 15 13 35 35 H 1.08001 * 120.49421 * 359.97438 * 19 18 17 36 36 H 1.07998 * 119.03725 * 180.31971 * 21 20 19 37 37 H 1.08007 * 120.49405 * 179.97438 * 23 22 21 38 38 H 1.07997 * 120.00091 * 0.02562 * 25 24 10 39 39 H 1.08005 * 119.99832 * 180.27723 * 26 25 24 40 40 H 1.08010 * 120.00454 * 179.83429 * 27 26 25 41 41 H 1.08006 * 120.00070 * 180.02562 * 28 27 26 42 42 H 1.07994 * 120.00018 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0023 11 1 3.5874 -3.1761 -0.8394 12 7 3.6336 -3.2906 1.2543 13 6 3.5068 -4.6316 1.3030 14 8 3.7136 -5.2970 0.3093 15 6 3.1117 -5.2986 2.5796 16 8 2.9053 -4.6330 3.5734 17 7 2.9854 -6.6395 2.6283 18 6 2.5100 -7.2549 3.7897 19 6 1.5772 -6.6185 4.6054 20 7 1.1563 -7.2327 5.6984 21 6 1.5990 -8.4336 6.0131 22 7 2.4813 -9.0688 5.2679 23 6 2.9561 -8.5209 4.1618 24 6 5.5236 -2.6383 -0.1210 25 6 6.3085 -2.3908 0.9897 26 6 7.6863 -2.3968 0.8774 27 6 8.2790 -2.6413 -0.3472 28 6 7.4939 -2.8837 -1.4589 29 6 6.1162 -2.8820 -1.3459 30 1 -0.4850 0.8399 -0.0004 31 1 3.8746 -0.6800 0.8911 32 1 3.8752 -0.6804 -0.8889 33 1 3.4679 -2.7587 2.0484 34 1 3.2245 -7.1775 1.8574 35 1 1.2068 -5.6363 4.3515 36 1 1.2311 -8.9095 6.9100 37 1 3.6792 -9.0471 3.5562 38 1 5.8454 -2.1964 1.9457 39 1 8.2996 -2.2078 1.7461 40 1 9.3554 -2.6434 -0.4354 41 1 7.9570 -3.0751 -2.4156 42 1 5.5030 -3.0718 -2.2143 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343678068.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:00 Heat of formation + Delta-G solvation = 13.234215 kcal Electronic energy + Delta-G solvation = -28325.448183 eV Core-core repulsion = 24270.995284 eV Total energy + Delta-G solvation = -4054.452898 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.66824 -40.49640 -39.35216 -38.26866 -36.03884 -35.30594 -33.96859 -32.77156 -31.43622 -30.81013 -30.67639 -29.44512 -26.25357 -25.12127 -24.82466 -23.21878 -22.42772 -21.89054 -20.71885 -20.02406 -19.02426 -17.89263 -17.76007 -17.37482 -17.16406 -16.47387 -16.33336 -15.72808 -15.48370 -15.03302 -14.84734 -14.43288 -14.34617 -14.00199 -13.93622 -13.79719 -13.55503 -13.21511 -13.00399 -12.74294 -12.50821 -12.00890 -11.88313 -11.58804 -11.51065 -11.44514 -11.23572 -11.09006 -10.84831 -10.72179 -10.31504 -9.93957 -9.74471 -9.48864 -9.41812 -8.90175 -8.82492 -8.73410 -8.68093 -8.45829 -6.17633 -4.18915 0.43858 0.78183 1.45941 1.52813 1.58592 2.17214 3.18792 3.21936 3.30730 3.31909 3.51536 3.55769 3.90331 3.98634 3.99404 4.19573 4.32408 4.48565 4.61982 5.00069 5.04034 5.06838 5.14834 5.16674 5.30834 5.49044 5.63547 5.67483 5.69184 5.83726 6.06572 6.16477 6.17005 6.26301 6.41230 6.60199 6.62118 6.65124 6.68188 6.79098 6.90002 7.08431 7.17593 7.38073 7.55295 7.69486 7.79719 8.14882 8.34215 8.85611 9.42357 10.94921 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009201 B = 0.003505 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3042.286587 B = 7987.736271 C =10269.210078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.074 3.926 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.527 4.527 8 H 0.076 0.924 9 C -0.014 4.014 10 C 0.193 3.807 11 H 0.099 0.901 12 N -0.660 5.660 13 C 0.510 3.490 14 O -0.524 6.524 15 C 0.512 3.488 16 O -0.492 6.492 17 N -0.640 5.640 18 C 0.048 3.952 19 C 0.151 3.849 20 N -0.497 5.497 21 C 0.271 3.729 22 N -0.502 5.502 23 C 0.128 3.872 24 C -0.082 4.082 25 C -0.109 4.109 26 C -0.124 4.124 27 C -0.130 4.130 28 C -0.122 4.122 29 C -0.105 4.105 30 H 0.265 0.735 31 H 0.026 0.974 32 H 0.035 0.965 33 H 0.415 0.585 34 H 0.428 0.572 35 H 0.181 0.819 36 H 0.199 0.801 37 H 0.173 0.827 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.432 -12.963 4.828 17.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.129 4.129 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.565 4.565 8 H 0.094 0.906 9 C -0.052 4.052 10 C 0.090 3.910 11 H 0.117 0.883 12 N -0.311 5.311 13 C 0.289 3.711 14 O -0.401 6.401 15 C 0.295 3.705 16 O -0.365 6.365 17 N -0.289 5.289 18 C -0.052 4.052 19 C -0.018 4.018 20 N -0.211 5.211 21 C -0.017 4.017 22 N -0.215 5.215 23 C -0.041 4.041 24 C -0.084 4.084 25 C -0.128 4.128 26 C -0.142 4.142 27 C -0.148 4.148 28 C -0.140 4.140 29 C -0.123 4.123 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.053 0.947 33 H 0.252 0.748 34 H 0.267 0.733 35 H 0.198 0.802 36 H 0.215 0.785 37 H 0.190 0.810 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 10.921 -13.179 5.620 18.015 hybrid contribution 0.686 1.371 -0.775 1.718 sum 11.608 -11.808 4.844 17.252 Atomic orbital electron populations 1.69890 1.06288 1.27134 1.49894 1.24971 0.94691 0.99035 0.94211 0.86856 0.80397 0.83822 0.78704 1.20146 1.21230 1.18906 1.20965 0.88488 0.94776 1.52272 0.90635 1.19902 0.98003 0.89232 0.98048 1.20179 0.88110 0.96835 0.85893 0.88291 1.45763 1.64866 1.05090 1.15340 1.19500 0.79847 0.84159 0.87581 1.90757 1.49957 1.64026 1.35387 1.20748 0.77614 0.82243 0.89913 1.90804 1.46362 1.63629 1.35655 1.43021 1.63611 1.07238 1.15037 1.19613 0.97893 0.96336 0.91365 1.23539 0.89256 1.00247 0.88750 1.68493 1.25844 1.10274 1.16448 1.24982 0.90556 0.87846 0.98329 1.68397 1.11527 1.36513 1.05034 1.23126 0.96458 0.91566 0.92995 1.20473 0.96348 0.97819 0.93716 1.20977 0.93527 0.99735 0.98536 1.21073 0.94773 1.00817 0.97510 1.21060 0.99392 1.01230 0.93142 1.21080 0.93790 1.00693 0.98437 1.21033 0.94708 0.99275 0.97296 0.92492 0.95545 0.94732 0.74781 0.73335 0.80214 0.78475 0.81029 0.86351 0.86509 0.86611 0.86331 0.85809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.96 55.43 0.77 -25.41 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 20.39 27.47 -169.99 -4.67 15.72 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.26 -5.87 6.54 56.52 0.37 -5.50 16 7 C -0.53 -13.63 9.39 -34.44 -0.32 -13.95 16 8 H 0.08 2.14 7.99 -52.49 -0.42 1.72 16 9 C -0.01 -0.30 3.56 -27.88 -0.10 -0.40 16 10 C 0.19 3.51 2.11 -69.08 -0.15 3.36 16 11 H 0.10 1.93 7.44 -51.93 -0.39 1.54 16 12 N -0.66 -11.18 4.03 -55.39 -0.22 -11.40 16 13 C 0.51 8.15 7.84 -11.63 -0.09 8.05 16 14 O -0.52 -9.02 16.15 5.49 0.09 -8.93 16 15 C 0.51 7.20 7.66 -11.63 -0.09 7.11 16 16 O -0.49 -7.79 14.18 5.47 0.08 -7.71 16 17 N -0.64 -7.05 5.35 -10.11 -0.05 -7.10 16 18 C 0.05 0.53 6.33 -83.45 -0.53 0.00 16 19 C 0.15 1.92 9.94 -16.98 -0.17 1.75 16 20 N -0.50 -6.17 10.43 -14.42 -0.15 -6.32 16 21 C 0.27 2.78 12.28 -92.14 -1.13 1.65 16 22 N -0.50 -5.23 10.43 -14.42 -0.15 -5.38 16 23 C 0.13 1.20 11.26 -16.98 -0.19 1.01 16 24 C -0.08 -1.33 4.91 -104.62 -0.51 -1.84 16 25 C -0.11 -1.62 9.32 -39.58 -0.37 -1.99 16 26 C -0.12 -1.60 10.05 -39.59 -0.40 -2.00 16 27 C -0.13 -1.59 10.05 -39.59 -0.40 -1.99 16 28 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 29 C -0.10 -1.55 9.67 -39.59 -0.38 -1.93 16 30 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.03 0.55 7.20 -51.93 -0.37 0.18 16 32 H 0.03 0.74 7.57 -51.93 -0.39 0.34 16 33 H 0.42 6.92 8.07 -40.82 -0.33 6.59 16 34 H 0.43 3.82 8.30 -40.82 -0.34 3.48 16 35 H 0.18 2.46 6.47 -52.49 -0.34 2.12 16 36 H 0.20 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.17 1.05 8.06 -52.48 -0.42 0.63 16 38 H 0.12 1.67 7.73 -52.49 -0.41 1.27 16 39 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 40 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 41 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 42 H 0.12 1.72 8.04 -52.49 -0.42 1.30 16 LS Contribution 370.03 15.07 5.58 5.58 Total: -1.00 -31.87 370.03 -8.75 -40.61 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -4.69 Total: 11.58 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -5.33 Total: -1.23 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: 0.20 Total: -55.62 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: 0.17 Total: -16.64 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.67 Total: 15.72 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.87 -8.75 -40.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343678068.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.848 kcal (2) G-P(sol) polarization free energy of solvation -31.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds