Wall clock time and date at job start Tue Mar 31 2020 22:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00077 * 2 1 4 4 H 1.48500 * 109.46930 * 269.99685 * 3 2 1 5 5 H 1.48508 * 109.47362 * 29.99456 * 3 2 1 6 6 H 1.48502 * 109.47605 * 149.99689 * 3 2 1 7 7 C 1.37873 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00360 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00215 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47674 * 175.54064 * 9 7 2 11 11 H 1.08998 * 109.46689 * 303.09015 * 10 9 7 12 12 N 1.46497 * 109.47245 * 63.08896 * 10 9 7 13 13 C 1.34775 * 120.00238 * 207.14066 * 12 10 9 14 14 O 1.21357 * 120.00016 * 354.79520 * 13 12 10 15 15 C 1.49352 * 120.00253 * 175.07364 * 13 12 10 16 16 O 1.21379 * 120.00000 * 359.72648 * 15 13 12 17 17 N 1.34773 * 120.00140 * 179.72322 * 15 13 12 18 18 C 1.39776 * 119.99894 * 184.77682 * 17 15 13 19 19 C 1.39290 * 120.87689 * 325.12640 * 18 17 15 20 20 N 1.32254 * 119.00929 * 179.70432 * 19 18 17 21 21 C 1.31807 * 120.89830 * 0.60275 * 20 19 18 22 22 N 1.31801 * 121.93397 * 359.67074 * 21 20 19 23 23 C 1.32255 * 120.90361 * 0.02562 * 22 21 20 24 24 C 1.50703 * 109.47602 * 183.09176 * 10 9 7 25 25 C 1.38236 * 119.99624 * 279.72761 * 24 10 9 26 26 C 1.38232 * 119.99451 * 179.81094 * 25 24 10 27 27 C 1.38237 * 120.00400 * 0.38857 * 26 25 24 28 28 C 1.38231 * 119.99659 * 359.86519 * 27 26 25 29 29 C 1.38231 * 120.00086 * 99.99519 * 24 10 9 30 30 H 0.97003 * 119.99698 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.47311 * 55.53791 * 9 7 2 32 32 H 1.09007 * 109.47169 * 295.54331 * 9 7 2 33 33 H 0.97003 * 120.00230 * 27.13554 * 12 10 9 34 34 H 0.97004 * 120.00214 * 4.77112 * 17 15 13 35 35 H 1.08006 * 120.49314 * 359.97438 * 19 18 17 36 36 H 1.07996 * 119.02839 * 179.68646 * 21 20 19 37 37 H 1.07992 * 120.49780 * 179.97438 * 23 22 21 38 38 H 1.07999 * 119.99908 * 359.97438 * 25 24 10 39 39 H 1.08005 * 119.99737 * 180.23253 * 26 25 24 40 40 H 1.07998 * 120.00041 * 179.83436 * 27 26 25 41 41 H 1.08004 * 120.00087 * 179.97438 * 28 27 26 42 42 H 1.08007 * 119.99832 * 359.97438 * 29 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6321 0.1138 11 1 3.6133 -3.0929 1.0133 12 7 3.5954 -3.3950 -1.0621 13 6 3.4257 -4.7291 -0.9747 14 8 3.7160 -5.3119 0.0494 15 6 2.8864 -5.4913 -2.1404 16 8 2.5961 -4.9085 -3.1647 17 7 2.7219 -6.8262 -2.0549 18 6 2.3123 -7.5532 -3.1763 19 6 1.4218 -7.0057 -4.0969 20 7 1.0636 -7.7241 -5.1479 21 6 1.5280 -8.9451 -5.3234 22 7 2.3676 -9.5006 -4.4727 23 6 2.7792 -8.8465 -3.3994 24 6 5.5266 -2.6269 0.1908 25 6 6.2771 -2.4933 -0.9623 26 6 7.6576 -2.4846 -0.8912 27 6 8.2876 -2.6175 0.3321 28 6 7.5370 -2.7564 1.4845 29 6 6.1565 -2.7612 1.4139 30 1 -0.4850 0.8401 -0.0004 31 1 3.8746 -0.6124 0.8485 32 1 3.8752 -0.7512 -0.9261 33 1 3.4353 -2.9398 -1.9036 34 1 2.8879 -7.2826 -1.2151 35 1 1.0331 -6.0078 -3.9567 36 1 1.2115 -9.5067 -6.1899 37 1 3.4669 -9.3081 -2.7065 38 1 5.7849 -2.3931 -1.9184 39 1 8.2440 -2.3764 -1.7917 40 1 9.3662 -2.6134 0.3873 41 1 8.0292 -2.8606 2.4402 42 1 5.5701 -2.8695 2.3144 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343678069.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:04 Heat of formation + Delta-G solvation = 13.902744 kcal Electronic energy + Delta-G solvation = -28318.353871 eV Core-core repulsion = 24263.929963 eV Total energy + Delta-G solvation = -4054.423909 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.65544 -40.48730 -39.34516 -38.26474 -36.02733 -35.29734 -33.95841 -32.76489 -31.43301 -30.80382 -30.67148 -29.43840 -26.23999 -25.09564 -24.82460 -23.21639 -22.42248 -21.88304 -20.71027 -20.02254 -19.01920 -17.87874 -17.76715 -17.34495 -17.13963 -16.47202 -16.41253 -15.71947 -15.42397 -15.02865 -14.84305 -14.42338 -14.34023 -13.97748 -13.92411 -13.76796 -13.60516 -13.20948 -12.99336 -12.73321 -12.49438 -12.11946 -11.91299 -11.56129 -11.44803 -11.35929 -11.21515 -11.07905 -10.86509 -10.55667 -10.40696 -9.96859 -9.74471 -9.47950 -9.39075 -8.89888 -8.83453 -8.73234 -8.67837 -8.45140 -6.17396 -4.18662 0.45450 0.79317 1.45352 1.53113 1.59110 2.19680 3.19794 3.21977 3.30794 3.32067 3.51372 3.57149 3.90775 3.99325 4.00674 4.21409 4.32583 4.50309 4.63803 5.01522 5.04522 5.06978 5.15275 5.16687 5.31017 5.52316 5.64755 5.67801 5.69381 5.84170 6.06620 6.16844 6.19202 6.25890 6.42086 6.61111 6.62570 6.65554 6.69692 6.79523 6.90361 7.08904 7.18159 7.39434 7.55604 7.70388 7.80469 8.15062 8.34362 8.85712 9.42613 10.95119 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009265 B = 0.003485 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3021.434820 B = 8031.687842 C =10305.590645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.527 4.527 8 H 0.076 0.924 9 C -0.016 4.016 10 C 0.194 3.806 11 H 0.099 0.901 12 N -0.661 5.661 13 C 0.511 3.489 14 O -0.524 6.524 15 C 0.512 3.488 16 O -0.493 6.493 17 N -0.641 5.641 18 C 0.044 3.956 19 C 0.151 3.849 20 N -0.499 5.499 21 C 0.272 3.728 22 N -0.503 5.503 23 C 0.129 3.871 24 C -0.081 4.081 25 C -0.110 4.110 26 C -0.124 4.124 27 C -0.130 4.130 28 C -0.122 4.122 29 C -0.105 4.105 30 H 0.265 0.735 31 H 0.041 0.959 32 H 0.021 0.979 33 H 0.415 0.585 34 H 0.428 0.572 35 H 0.185 0.815 36 H 0.198 0.802 37 H 0.173 0.827 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.045 -13.307 -3.762 17.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.129 4.129 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.564 4.564 8 H 0.094 0.906 9 C -0.053 4.053 10 C 0.090 3.910 11 H 0.117 0.883 12 N -0.311 5.311 13 C 0.290 3.710 14 O -0.401 6.401 15 C 0.295 3.705 16 O -0.365 6.365 17 N -0.289 5.289 18 C -0.055 4.055 19 C -0.017 4.017 20 N -0.213 5.213 21 C -0.016 4.016 22 N -0.216 5.216 23 C -0.040 4.040 24 C -0.083 4.083 25 C -0.128 4.128 26 C -0.142 4.142 27 C -0.149 4.149 28 C -0.140 4.140 29 C -0.123 4.123 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.039 0.961 33 H 0.252 0.748 34 H 0.267 0.733 35 H 0.202 0.798 36 H 0.215 0.785 37 H 0.190 0.810 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 10.590 -13.602 -4.530 17.823 hybrid contribution 0.607 1.437 0.716 1.716 sum 11.197 -12.165 -3.814 16.968 Atomic orbital electron populations 1.69898 1.06284 1.27111 1.49932 1.24972 0.94697 0.99039 0.94214 0.86857 0.80422 0.83808 0.78702 1.20146 1.21240 1.18861 1.20960 0.88491 0.94777 1.52211 0.90628 1.19932 0.98015 0.89360 0.98015 1.20193 0.87782 0.94854 0.88122 0.88310 1.45754 1.64139 1.05521 1.15685 1.19492 0.80289 0.83983 0.87229 1.90754 1.50188 1.68683 1.30513 1.20745 0.78413 0.82280 0.89065 1.90787 1.46817 1.68198 1.30660 1.42993 1.65938 1.07262 1.12750 1.19632 0.98681 0.94984 0.92239 1.23698 0.89447 1.00492 0.88094 1.68516 1.24749 1.07456 1.20529 1.24989 0.90321 0.89007 0.97301 1.68401 1.12627 1.37302 1.03269 1.23158 0.95918 0.90355 0.94534 1.20468 0.96372 0.97912 0.93504 1.20966 0.93714 0.99920 0.98199 1.21072 0.94583 1.00905 0.97597 1.21055 0.99408 1.01507 0.92882 1.21077 0.93958 1.00759 0.98191 1.21031 0.94470 0.99376 0.97461 0.92507 0.94140 0.96063 0.74822 0.73337 0.79849 0.78506 0.81028 0.86374 0.86510 0.86619 0.86346 0.85840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.96 55.43 0.77 -25.43 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 20.39 27.56 -169.99 -4.68 15.70 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.26 -5.88 6.42 56.52 0.36 -5.52 16 7 C -0.53 -13.60 9.36 -34.44 -0.32 -13.92 16 8 H 0.08 2.13 7.94 -52.49 -0.42 1.72 16 9 C -0.02 -0.33 3.61 -27.89 -0.10 -0.43 16 10 C 0.19 3.52 2.13 -69.08 -0.15 3.37 16 11 H 0.10 1.92 7.45 -51.93 -0.39 1.53 16 12 N -0.66 -11.18 3.90 -55.40 -0.22 -11.40 16 13 C 0.51 8.18 7.86 -11.63 -0.09 8.09 16 14 O -0.52 -9.00 16.16 5.49 0.09 -8.91 16 15 C 0.51 7.27 7.75 -11.63 -0.09 7.18 16 16 O -0.49 -7.86 13.98 5.47 0.08 -7.79 16 17 N -0.64 -7.11 5.35 -10.11 -0.05 -7.17 16 18 C 0.04 0.49 6.34 -83.45 -0.53 -0.04 16 19 C 0.15 1.93 9.98 -16.98 -0.17 1.76 16 20 N -0.50 -6.18 10.43 -14.42 -0.15 -6.33 16 21 C 0.27 2.79 12.28 -92.14 -1.13 1.66 16 22 N -0.50 -5.26 10.43 -14.42 -0.15 -5.42 16 23 C 0.13 1.23 11.26 -16.98 -0.19 1.03 16 24 C -0.08 -1.32 4.94 -104.62 -0.52 -1.83 16 25 C -0.11 -1.63 9.33 -39.58 -0.37 -1.99 16 26 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 27 C -0.13 -1.60 10.05 -39.58 -0.40 -2.00 16 28 C -0.12 -1.57 10.05 -39.59 -0.40 -1.97 16 29 C -0.10 -1.56 9.67 -39.59 -0.38 -1.94 16 30 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.04 0.88 6.89 -51.93 -0.36 0.52 16 32 H 0.02 0.44 7.79 -51.92 -0.40 0.03 16 33 H 0.41 6.89 8.11 -40.82 -0.33 6.56 16 34 H 0.43 3.88 8.30 -40.82 -0.34 3.54 16 35 H 0.18 2.53 6.32 -52.48 -0.33 2.20 16 36 H 0.20 1.34 8.06 -52.49 -0.42 0.91 16 37 H 0.17 1.08 8.06 -52.49 -0.42 0.65 16 38 H 0.12 1.66 7.71 -52.49 -0.40 1.25 16 39 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 40 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 41 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 42 H 0.12 1.72 8.04 -52.48 -0.42 1.30 16 LS Contribution 369.63 15.07 5.57 5.57 Total: -1.00 -31.83 369.63 -8.76 -40.59 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -4.68 Total: 11.72 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -5.33 Total: -1.14 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: 0.20 Total: -55.74 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: 0.17 Total: -16.70 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.68 Total: 15.70 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.83 -8.76 -40.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343678069.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.492 kcal (2) G-P(sol) polarization free energy of solvation -31.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds