Wall clock time and date at job start Tue Mar 31 2020 23:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86808 * 119.99553 * 2 1 4 4 H 1.48490 * 109.47235 * 269.99717 * 3 2 1 5 5 H 1.48497 * 109.47334 * 30.00346 * 3 2 1 6 6 H 1.48503 * 109.46609 * 149.99803 * 3 2 1 7 7 C 1.38947 * 120.00450 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00101 * 180.02562 * 7 2 1 9 9 N 1.37107 * 119.99499 * 359.97438 * 7 2 1 10 10 C 1.34775 * 119.99594 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00033 * 359.97438 * 10 9 7 12 12 C 1.50695 * 119.99919 * 180.02562 * 10 9 7 13 13 N 1.46503 * 109.47271 * 179.97438 * 12 10 9 14 14 C 1.34774 * 119.99945 * 179.97438 * 13 12 10 15 15 O 1.21653 * 120.00088 * 0.02562 * 14 13 12 16 16 C 1.47195 * 120.00076 * 179.97438 * 14 13 12 17 17 C 1.40077 * 119.97270 * 179.97438 * 16 14 13 18 18 C 1.36285 * 120.02976 * 180.02562 * 17 16 14 19 19 C 1.40322 * 119.96753 * 0.25630 * 18 17 16 20 20 N 1.35110 * 120.02523 * 179.72767 * 19 18 17 21 21 C 1.33467 * 120.00144 * 265.21269 * 20 19 18 22 22 C 1.41835 * 120.67956 * 5.14441 * 21 20 19 23 23 C 1.34931 * 119.23821 * 179.72070 * 22 21 20 24 24 N 1.35926 * 120.70187 * 0.58672 * 23 22 21 25 25 H 0.96999 * 119.25473 * 179.70754 * 24 23 22 26 26 C 1.35911 * 121.47679 * 359.68335 * 24 23 22 27 27 C 1.34929 * 120.70610 * 0.02562 * 26 24 23 28 28 C 1.40321 * 119.94451 * 359.51840 * 19 18 17 29 29 C 1.36281 * 119.96986 * 0.45516 * 28 19 18 30 30 H 0.97006 * 120.00420 * 359.97438 * 1 2 3 31 31 H 0.96993 * 120.00220 * 0.02562 * 9 7 2 32 32 H 1.09003 * 109.47207 * 59.99612 * 12 10 9 33 33 H 1.09003 * 109.47046 * 300.00059 * 12 10 9 34 34 H 0.96992 * 119.99595 * 0.02562 * 13 12 10 35 35 H 1.08006 * 119.98902 * 0.02562 * 17 16 14 36 36 H 1.08000 * 120.01376 * 179.97438 * 18 17 16 37 37 H 1.07992 * 120.37919 * 0.02562 * 22 21 20 38 38 H 1.07990 * 119.65132 * 180.29255 * 23 22 21 39 39 H 1.07997 * 119.65063 * 180.02562 * 26 24 23 40 40 H 1.08002 * 120.37936 * 180.02562 * 27 26 24 41 41 H 1.07997 * 120.01284 * 180.23018 * 28 19 18 42 42 H 1.07996 * 119.98775 * 179.77072 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5455 1.4403 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1960 -5.9764 -0.0016 14 6 1.7467 -7.2471 -0.0017 15 8 0.5507 -7.4694 -0.0018 16 6 2.7032 -8.3659 -0.0027 17 6 2.2357 -9.6863 -0.0022 18 6 3.1203 -10.7231 -0.0027 19 6 4.5000 -10.4672 0.0018 20 7 5.3780 -11.4942 0.0069 21 6 5.8808 -11.9365 1.1613 22 6 5.4233 -11.4134 2.3977 23 6 5.9477 -11.8858 3.5477 24 7 6.9123 -12.8433 3.5288 25 1 7.2777 -13.1647 4.3679 26 6 7.3758 -13.3607 2.3607 27 6 6.8882 -12.9348 1.1769 28 6 4.9670 -9.1441 -0.0035 29 6 4.0804 -8.1091 -0.0036 30 1 -0.4851 0.8401 0.0004 31 1 0.3535 -2.3907 -0.0005 32 1 0.6175 -4.9204 -0.8913 33 1 0.6169 -4.9208 0.8886 34 1 3.1495 -5.7991 -0.0012 35 1 1.1737 -9.8829 -0.0015 36 1 2.7595 -11.7410 -0.0019 37 1 4.6604 -10.6494 2.4187 38 1 5.6008 -11.4956 4.4930 39 1 8.1427 -14.1208 2.3800 40 1 7.2600 -13.3498 0.2518 41 1 6.0287 -8.9459 -0.0039 42 1 4.4395 -7.0906 -0.0039 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344153324.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:59 Heat of formation + Delta-G solvation = -13.134085 kcal Electronic energy + Delta-G solvation = -26844.526575 eV Core-core repulsion = 22788.930261 eV Total energy + Delta-G solvation = -4055.596314 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.56113 -41.18508 -40.22535 -39.42236 -36.67228 -36.28036 -35.37694 -33.40417 -32.89604 -32.39442 -32.14093 -30.28311 -28.75054 -26.52344 -25.12096 -24.19265 -23.46904 -22.65791 -21.40825 -21.26991 -20.12979 -19.91517 -19.22697 -18.22238 -17.48444 -17.24811 -17.14355 -16.75631 -16.52550 -16.04750 -15.94779 -15.80034 -15.52651 -15.47131 -15.10470 -15.06161 -14.77496 -14.52101 -14.13122 -13.88041 -13.76146 -13.55472 -13.38854 -13.18458 -12.91502 -12.73680 -12.64343 -12.46472 -12.12574 -11.73073 -11.58251 -11.21463 -11.07048 -10.58319 -10.54503 -10.26447 -10.12591 -10.09947 -8.90378 -8.51532 -8.30733 -6.02086 -0.17788 0.29460 0.44881 0.52310 1.35901 1.42249 1.55221 1.78008 1.89710 2.00774 2.17937 2.31659 2.67246 2.84926 3.09377 3.15282 3.62357 3.79064 3.87430 3.88811 3.95094 4.19292 4.21427 4.30620 4.33737 4.37763 4.40527 4.40838 4.59959 4.64078 4.85190 5.03324 5.12032 5.21568 5.29100 5.35580 5.37846 5.39988 5.54451 5.63631 5.90532 5.91770 5.97121 6.43785 6.44119 6.50011 7.02069 7.10703 7.34539 7.42375 7.92659 8.65323 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020042 B = 0.001806 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.757716 B =15498.474699 C =16274.792451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.011 4.011 3 Si 0.999 3.001 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.087 0.913 9 N -0.558 5.558 10 C 0.433 3.567 11 O -0.624 6.624 12 C 0.120 3.880 13 N -0.705 5.705 14 C 0.563 3.437 15 O -0.583 6.583 16 C -0.193 4.193 17 C -0.032 4.032 18 C -0.175 4.175 19 C 0.189 3.811 20 N -0.644 5.644 21 C 0.274 3.726 22 C -0.301 4.301 23 C 0.172 3.828 24 N -0.576 5.576 25 H 0.445 0.555 26 C 0.163 3.837 27 C -0.240 4.240 28 C -0.176 4.176 29 C -0.051 4.051 30 H 0.280 0.720 31 H 0.399 0.601 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.412 0.588 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.119 0.881 38 H 0.204 0.796 39 H 0.220 0.780 40 H 0.145 0.855 41 H 0.128 0.872 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.011 -30.673 12.216 36.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.212 4.212 3 Si 0.822 3.178 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.105 0.895 9 N -0.193 5.193 10 C 0.220 3.780 11 O -0.512 6.512 12 C -0.007 4.007 13 N -0.359 5.359 14 C 0.353 3.647 15 O -0.465 6.465 16 C -0.198 4.198 17 C -0.051 4.051 18 C -0.196 4.196 19 C 0.085 3.915 20 N -0.362 5.362 21 C 0.116 3.884 22 C -0.329 4.329 23 C 0.040 3.960 24 N -0.181 5.181 25 H 0.286 0.714 26 C 0.032 3.968 27 C -0.267 4.267 28 C -0.197 4.197 29 C -0.070 4.070 30 H 0.090 0.910 31 H 0.233 0.767 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.251 0.749 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.137 0.863 38 H 0.220 0.780 39 H 0.236 0.764 40 H 0.162 0.838 41 H 0.145 0.855 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 15.851 -30.769 11.275 36.401 hybrid contribution -0.410 1.574 0.246 1.645 sum 15.441 -29.195 11.520 34.978 Atomic orbital electron populations 1.69685 1.07018 1.29671 1.49140 1.26159 0.96571 1.02728 0.95712 0.84842 0.77903 0.76362 0.78704 1.19599 1.19517 1.19413 1.19755 0.92997 0.83501 1.50500 0.89546 1.41831 1.09597 1.04550 1.63306 1.20360 0.88104 0.85865 0.83696 1.90465 1.15149 1.87521 1.58090 1.20816 0.91679 0.83835 1.04384 1.45625 1.11410 1.04472 1.74408 1.18421 0.88139 0.82797 0.75345 1.90723 1.17517 1.85379 1.52896 1.19654 0.93132 0.93143 1.13822 1.20843 1.00367 0.90627 0.93311 1.21169 0.92107 0.99138 1.07185 1.18998 0.91728 0.91115 0.89657 1.68421 1.23085 1.19666 1.25000 1.19558 0.89917 0.90861 0.88111 1.21630 1.09161 1.09044 0.93087 1.22202 0.86515 0.86737 1.00543 1.41520 1.32893 1.33130 1.10566 0.71429 1.22406 0.95700 0.95048 0.83628 1.20735 1.02512 1.03703 0.99722 1.21196 0.99852 0.91628 1.07008 1.21016 0.91616 0.99799 0.94594 0.91032 0.76660 0.88760 0.88507 0.74903 0.85068 0.85213 0.86271 0.77965 0.76384 0.83763 0.85451 0.85087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.51 13.05 21.66 0.28 -49.22 16 2 C -0.01 -0.58 5.50 84.93 0.47 -0.12 16 3 Si 1.00 42.52 29.55 68.60 2.03 44.55 16 4 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.34 -19.10 9.68 84.04 0.81 -18.29 16 8 H 0.09 5.12 7.16 -2.91 -0.02 5.10 16 9 N -0.56 -29.01 5.29 -306.99 -1.62 -30.63 16 10 C 0.43 21.06 7.85 87.66 0.69 21.74 16 11 O -0.62 -33.71 15.24 -3.08 -0.05 -33.76 16 12 C 0.12 4.83 6.15 85.63 0.53 5.35 16 13 N -0.71 -26.89 5.48 -470.30 -2.58 -29.47 16 14 C 0.56 21.39 7.75 86.60 0.67 22.06 16 15 O -0.58 -24.98 16.32 -4.20 -0.07 -25.05 16 16 C -0.19 -6.45 5.88 -20.03 -0.12 -6.56 16 17 C -0.03 -0.98 9.53 22.26 0.21 -0.77 16 18 C -0.18 -5.04 9.94 22.32 0.22 -4.82 16 19 C 0.19 5.55 4.12 39.65 0.16 5.71 16 20 N -0.64 -17.89 10.36 -181.59 -1.88 -19.77 16 21 C 0.27 5.35 6.63 40.67 0.27 5.62 16 22 C -0.30 -4.45 9.25 22.40 0.21 -4.24 16 23 C 0.17 0.51 11.17 83.30 0.93 1.44 16 24 N -0.58 1.93 5.27 -195.09 -1.03 0.90 16 25 H 0.45 -5.36 8.90 -92.71 -0.83 -6.18 16 26 C 0.16 -0.11 11.17 83.30 0.93 0.82 16 27 C -0.24 -2.58 10.01 22.40 0.22 -2.36 16 28 C -0.18 -5.10 9.94 22.32 0.22 -4.88 16 29 C -0.05 -1.54 9.47 22.26 0.21 -1.33 16 30 H 0.28 14.15 8.31 -92.70 -0.77 13.37 16 31 H 0.40 19.94 7.90 -92.71 -0.73 19.21 16 32 H 0.09 3.62 8.14 -2.39 -0.02 3.60 16 33 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 34 H 0.41 15.43 5.43 -92.71 -0.50 14.92 16 35 H 0.13 3.97 7.63 -2.91 -0.02 3.95 16 36 H 0.13 3.39 8.06 -2.91 -0.02 3.37 16 37 H 0.12 2.34 7.06 -2.91 -0.02 2.31 16 38 H 0.20 -0.90 8.06 -2.92 -0.02 -0.92 16 39 H 0.22 -2.30 8.06 -2.91 -0.02 -2.33 16 40 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 41 H 0.13 3.43 8.06 -2.91 -0.02 3.41 16 42 H 0.13 3.75 6.37 -2.91 -0.02 3.74 16 Total: -1.00 -86.49 371.27 0.78 -85.71 By element: Atomic # 1 Polarization: 38.30 SS G_CDS: -0.95 Total: 37.35 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: 6.64 Total: 19.39 kcal Atomic # 7 Polarization: -121.37 SS G_CDS: -6.82 Total: -128.19 kcal Atomic # 8 Polarization: -58.69 SS G_CDS: -0.12 Total: -58.81 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -86.49 0.78 -85.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344153324.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.575 kcal (2) G-P(sol) polarization free energy of solvation -86.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds