Wall clock time and date at job start Tue Mar 31 2020 23:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 119.99686 * 2 1 4 4 H 1.48499 * 109.47464 * 0.02562 * 3 2 1 5 5 H 1.48509 * 109.47082 * 119.99814 * 3 2 1 6 6 H 1.48498 * 109.47518 * 240.00035 * 3 2 1 7 7 C 1.37870 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99271 * 187.14919 * 7 2 1 9 9 C 1.50694 * 120.00327 * 7.14458 * 7 2 1 10 10 C 1.53002 * 115.55360 * 275.16745 * 9 7 2 11 11 S 1.81402 * 109.46958 * 299.70423 * 10 9 7 12 12 O 1.42104 * 110.54641 * 298.08689 * 11 10 9 13 13 O 1.42102 * 110.54262 * 74.83790 * 11 10 9 14 14 N 1.65598 * 104.44974 * 186.46059 * 11 10 9 15 15 C 1.46499 * 120.00027 * 270.00197 * 14 11 10 16 16 C 1.53001 * 109.47246 * 94.99980 * 15 14 11 17 17 O 1.42899 * 109.47099 * 64.99979 * 16 15 14 18 18 C 1.46497 * 120.00096 * 89.99935 * 14 11 10 19 19 C 1.50699 * 109.47183 * 95.00237 * 18 14 11 20 20 C 1.38679 * 120.41638 * 269.72319 * 19 18 14 21 21 C 1.38628 * 118.41745 * 179.78005 * 20 19 18 22 22 C 1.38223 * 119.16177 * 0.51543 * 21 20 19 23 23 N 1.31855 * 120.76844 * 359.72143 * 22 21 20 24 24 C 1.31886 * 121.71971 * 0.02562 * 23 22 21 25 25 C 1.53003 * 117.49769 * 129.49893 * 9 7 2 26 26 C 1.52997 * 117.50018 * 60.84292 * 9 7 2 27 27 H 0.96999 * 119.99554 * 175.44219 * 1 2 3 28 28 H 1.08998 * 109.46920 * 59.70305 * 10 9 7 29 29 H 1.09000 * 109.47460 * 179.70660 * 10 9 7 30 30 H 1.09001 * 109.47062 * 214.99874 * 15 14 11 31 31 H 1.09003 * 109.47472 * 334.99772 * 15 14 11 32 32 H 1.09004 * 109.47241 * 184.99942 * 16 15 14 33 33 H 1.08998 * 109.46812 * 304.99760 * 16 15 14 34 34 H 0.96704 * 114.00041 * 180.02562 * 17 16 15 35 35 H 1.08999 * 109.47474 * 215.00071 * 18 14 11 36 36 H 1.08999 * 109.47181 * 335.00438 * 18 14 11 37 37 H 1.08002 * 120.79094 * 0.02562 * 20 19 18 38 38 H 1.08002 * 120.41913 * 180.21930 * 21 20 19 39 39 H 1.08005 * 119.62097 * 179.74779 * 22 21 20 40 40 H 1.08004 * 119.61994 * 179.97438 * 24 23 22 41 41 H 1.09000 * 117.50124 * 0.02562 * 25 9 7 42 42 H 1.09003 * 117.49892 * 145.02254 * 25 9 7 43 43 H 1.08999 * 117.49975 * 214.98199 * 26 9 7 44 44 H 1.09008 * 117.49558 * 359.96758 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6965 1.2126 6 1 3.1029 1.6965 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0782 -1.1976 0.1159 9 6 1.2599 -2.4939 -0.1634 10 6 0.6784 -3.0869 1.1216 11 16 2.0207 -3.4190 2.2957 12 8 2.9271 -4.3734 1.7600 13 8 2.4888 -2.2081 2.8735 14 7 1.2860 -4.2126 3.5497 15 6 0.7362 -3.4532 4.6754 16 6 -0.7548 -3.2018 4.4414 17 8 -1.4547 -4.4477 4.4481 18 6 1.1857 -5.6740 3.5334 19 6 2.3361 -6.2652 4.3067 20 6 3.5250 -6.5797 3.6658 21 6 4.5579 -7.1173 4.4182 22 6 4.3661 -7.3305 5.7703 23 7 3.2199 -7.0238 6.3456 24 6 2.2176 -6.5063 5.6622 25 6 1.7683 -3.4710 -1.2254 26 6 0.4680 -2.6973 -1.4567 27 1 -0.4849 -0.8374 -0.0668 28 1 -0.0236 -2.3795 1.5629 29 1 0.1597 -4.0173 0.8902 30 1 0.8688 -4.0213 5.5962 31 1 1.2568 -2.4992 4.7590 32 1 -1.1441 -2.5621 5.2335 33 1 -0.8937 -2.7121 3.4776 34 1 -2.4074 -4.3644 4.3048 35 1 0.2450 -5.9789 3.9919 36 1 1.2197 -6.0291 2.5034 37 1 3.6448 -6.4062 2.6066 38 1 5.4989 -7.3708 3.9527 39 1 5.1643 -7.7527 6.3627 40 1 1.2934 -6.2683 6.1678 41 1 2.6416 -3.1738 -1.8059 42 1 1.6881 -4.5363 -1.0087 43 1 -0.4670 -3.2537 -1.3921 44 1 0.4853 -1.8904 -2.1895 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346454116.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:35 Heat of formation + Delta-G solvation = -62.008205 kcal Electronic energy + Delta-G solvation = -28989.271120 eV Core-core repulsion = 25034.706666 eV Total energy + Delta-G solvation = -3954.564454 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.14624 -37.65252 -37.13621 -36.48568 -35.63754 -35.13376 -32.57262 -32.03981 -31.59635 -29.06412 -28.38921 -25.81630 -25.03028 -23.57422 -22.58765 -21.78351 -21.46365 -19.80422 -18.48022 -17.75478 -17.14597 -17.00729 -16.76520 -16.31438 -16.01271 -15.77223 -15.08652 -14.78421 -14.27445 -14.11594 -13.87328 -13.76678 -13.46770 -13.32526 -13.24786 -12.92397 -12.68608 -12.54421 -12.44487 -11.94658 -11.62897 -11.58602 -11.35118 -11.22965 -11.18221 -11.03110 -10.81812 -10.68464 -10.40678 -10.12479 -10.06971 -9.76018 -9.72216 -9.50279 -9.05606 -8.93514 -8.71694 -8.54229 -8.35239 -6.51853 -4.30751 0.81091 1.15759 1.35554 3.20753 3.41341 3.45345 3.61921 3.87659 4.19457 4.41687 4.43887 4.47525 4.67209 4.76060 4.83424 4.91196 4.95618 5.04892 5.12500 5.15754 5.19335 5.32343 5.34682 5.45272 5.52918 5.60847 5.70923 5.76978 5.86919 5.90587 6.00573 6.09396 6.14893 6.25896 6.29133 6.40238 6.47839 6.67943 6.72347 6.76411 6.95874 7.11782 7.53927 7.95853 7.97459 8.27317 8.70779 9.48399 10.87943 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014726 B = 0.004146 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.885783 B = 6751.629000 C = 7196.904425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.041 3.959 3 Si 1.061 2.939 4 H -0.281 1.281 5 H -0.280 1.280 6 H -0.285 1.285 7 C -0.592 4.592 8 H 0.061 0.939 9 C 0.022 3.978 10 C -0.566 4.566 11 S 2.613 3.387 12 O -0.966 6.966 13 O -0.943 6.943 14 N -0.998 5.998 15 C 0.115 3.885 16 C 0.051 3.949 17 O -0.569 6.569 18 C 0.171 3.829 19 C -0.156 4.156 20 C -0.054 4.054 21 C -0.178 4.178 22 C 0.093 3.907 23 N -0.493 5.493 24 C 0.110 3.890 25 C -0.189 4.189 26 C -0.165 4.165 27 H 0.274 0.726 28 H 0.123 0.877 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.376 0.624 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.152 0.848 38 H 0.134 0.866 39 H 0.152 0.848 40 H 0.153 0.847 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.259 -12.016 8.630 14.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.166 4.166 3 Si 0.888 3.112 4 H -0.206 1.206 5 H -0.206 1.206 6 H -0.211 1.211 7 C -0.629 4.629 8 H 0.079 0.921 9 C 0.019 3.981 10 C -0.698 4.698 11 S 2.710 3.290 12 O -0.957 6.957 13 O -0.933 6.933 14 N -0.832 5.832 15 C -0.011 4.011 16 C -0.028 4.028 17 O -0.375 6.375 18 C 0.045 3.955 19 C -0.159 4.159 20 C -0.080 4.080 21 C -0.198 4.198 22 C -0.064 4.064 23 N -0.201 5.201 24 C -0.048 4.048 25 C -0.227 4.227 26 C -0.204 4.204 27 H 0.085 0.915 28 H 0.141 0.859 29 H 0.118 0.882 30 H 0.102 0.898 31 H 0.128 0.872 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.223 0.777 35 H 0.120 0.880 36 H 0.104 0.896 37 H 0.170 0.830 38 H 0.151 0.849 39 H 0.169 0.831 40 H 0.170 0.830 41 H 0.107 0.893 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.048 -10.530 9.700 14.317 hybrid contribution -1.039 -1.311 -1.309 2.124 sum -1.087 -11.842 8.391 14.554 Atomic orbital electron populations 1.70783 1.06848 1.31484 1.43887 1.25800 0.96333 1.02453 0.92004 0.83665 0.75292 0.75065 0.77198 1.20581 1.20632 1.21098 1.21375 0.94774 0.89650 1.57131 0.92079 1.18557 0.99596 0.95796 0.84126 1.30189 1.17376 1.07615 1.14649 1.05059 0.76394 0.73424 0.74099 1.93448 1.60269 1.62066 1.79900 1.93532 1.78233 1.46243 1.75335 1.57925 1.76210 1.13562 1.35532 1.21441 0.91364 0.98085 0.90179 1.22834 0.93229 0.85924 1.00821 1.86436 1.24137 1.30879 1.96002 1.20048 0.96167 0.79037 1.00269 1.21370 0.97645 1.00833 0.96098 1.21985 0.91665 0.92284 1.02098 1.22195 1.00341 1.01586 0.95650 1.22736 0.94776 0.96261 0.92662 1.67686 1.00772 1.11709 1.39943 1.22657 0.97275 0.94143 0.90699 1.23036 0.98203 0.95755 1.05682 1.22791 0.93280 1.02119 1.02179 0.91481 0.85920 0.88194 0.89775 0.87243 0.92425 0.93003 0.77706 0.88039 0.89641 0.82990 0.84850 0.83076 0.82969 0.89285 0.90659 0.91221 0.89288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.10 13.57 55.43 0.75 -24.34 16 2 C 0.04 1.13 5.39 -17.82 -0.10 1.04 16 3 Si 1.06 24.84 29.91 -169.99 -5.08 19.75 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.59 -16.06 7.90 -34.45 -0.27 -16.33 16 8 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 9 C 0.02 0.51 0.95 -155.66 -0.15 0.36 16 10 C -0.57 -11.37 5.95 37.16 0.22 -11.14 16 11 S 2.61 51.71 5.01 -107.50 -0.54 51.18 16 12 O -0.97 -19.89 14.91 -57.54 -0.86 -20.75 16 13 O -0.94 -22.26 16.04 -57.54 -0.92 -23.18 16 14 N -1.00 -15.08 2.69 -115.66 -0.31 -15.39 16 15 C 0.12 1.54 6.10 -4.04 -0.02 1.51 16 16 C 0.05 0.59 7.39 37.16 0.27 0.87 16 17 O -0.57 -5.79 11.98 -35.23 -0.42 -6.22 16 18 C 0.17 2.23 5.27 -5.20 -0.03 2.20 16 19 C -0.16 -2.12 5.48 -104.48 -0.57 -2.69 16 20 C -0.05 -0.76 9.26 -39.27 -0.36 -1.12 16 21 C -0.18 -2.17 10.11 -39.44 -0.40 -2.57 16 22 C 0.09 1.11 11.18 -17.55 -0.20 0.92 16 23 N -0.49 -6.73 10.36 -13.25 -0.14 -6.87 16 24 C 0.11 1.43 10.56 -17.55 -0.19 1.24 16 25 C -0.19 -4.01 9.95 -26.70 -0.27 -4.27 16 26 C -0.16 -3.58 8.75 -26.70 -0.23 -3.81 16 27 H 0.27 7.46 6.17 -40.82 -0.25 7.20 16 28 H 0.12 2.52 6.78 -51.92 -0.35 2.17 16 29 H 0.10 1.68 8.11 -51.92 -0.42 1.26 16 30 H 0.08 0.97 7.65 -51.93 -0.40 0.58 16 31 H 0.11 1.59 6.82 -51.93 -0.35 1.24 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.67 7.10 -51.93 -0.37 0.30 16 34 H 0.38 2.39 9.12 45.56 0.42 2.81 16 35 H 0.10 1.15 6.55 -51.93 -0.34 0.81 16 36 H 0.09 1.08 7.56 -51.93 -0.39 0.68 16 37 H 0.15 2.26 6.60 -52.49 -0.35 1.91 16 38 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 39 H 0.15 1.35 8.06 -52.48 -0.42 0.92 16 40 H 0.15 1.67 7.91 -52.48 -0.42 1.25 16 41 H 0.09 1.89 8.14 -51.93 -0.42 1.46 16 42 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.09 2.06 8.14 -51.92 -0.42 1.64 16 LS Contribution 375.04 15.07 5.65 5.65 Total: -1.00 -34.04 375.04 -9.55 -43.59 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -5.39 Total: 10.37 kcal Atomic # 6 Polarization: -31.51 SS G_CDS: -2.29 Total: -33.80 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: 0.30 Total: -46.60 kcal Atomic # 8 Polarization: -47.94 SS G_CDS: -2.20 Total: -50.14 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -5.08 Total: 19.75 kcal Atomic # 16 Polarization: 51.71 SS G_CDS: -0.54 Total: 51.18 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.04 -9.55 -43.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346454116.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.417 kcal (2) G-P(sol) polarization free energy of solvation -34.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds