Wall clock time and date at job start Tue Mar 31 2020 23:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 119.99686 * 2 1 4 4 H 1.48499 * 109.47464 * 0.02562 * 3 2 1 5 5 H 1.48509 * 109.47082 * 119.99814 * 3 2 1 6 6 H 1.48498 * 109.47518 * 240.00035 * 3 2 1 7 7 C 1.37870 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99271 * 187.14919 * 7 2 1 9 9 C 1.50694 * 120.00327 * 7.14458 * 7 2 1 10 10 C 1.53002 * 115.55360 * 275.16745 * 9 7 2 11 11 S 1.81402 * 109.46958 * 299.70423 * 10 9 7 12 12 O 1.42104 * 110.54641 * 298.08689 * 11 10 9 13 13 O 1.42102 * 110.54262 * 74.83790 * 11 10 9 14 14 N 1.65598 * 104.44974 * 186.46059 * 11 10 9 15 15 C 1.46499 * 120.00027 * 270.00197 * 14 11 10 16 16 C 1.53001 * 109.47246 * 94.99980 * 15 14 11 17 17 O 1.42899 * 109.47099 * 64.99979 * 16 15 14 18 18 C 1.46497 * 120.00096 * 89.99935 * 14 11 10 19 19 C 1.50699 * 109.47183 * 95.00237 * 18 14 11 20 20 C 1.38679 * 120.41638 * 269.72319 * 19 18 14 21 21 C 1.38628 * 118.41745 * 179.78005 * 20 19 18 22 22 C 1.38223 * 119.16177 * 0.51543 * 21 20 19 23 23 N 1.31855 * 120.76844 * 359.72143 * 22 21 20 24 24 C 1.31886 * 121.71971 * 0.02562 * 23 22 21 25 25 C 1.53003 * 117.49769 * 129.49893 * 9 7 2 26 26 C 1.52997 * 117.50018 * 60.84292 * 9 7 2 27 27 H 0.96999 * 119.99554 * 175.44219 * 1 2 3 28 28 H 1.08998 * 109.46920 * 59.70305 * 10 9 7 29 29 H 1.09000 * 109.47460 * 179.70660 * 10 9 7 30 30 H 1.09001 * 109.47062 * 214.99874 * 15 14 11 31 31 H 1.09003 * 109.47472 * 334.99772 * 15 14 11 32 32 H 1.09004 * 109.47241 * 184.99942 * 16 15 14 33 33 H 1.08998 * 109.46812 * 304.99760 * 16 15 14 34 34 H 0.96704 * 114.00041 * 180.02562 * 17 16 15 35 35 H 1.08999 * 109.47474 * 215.00071 * 18 14 11 36 36 H 1.08999 * 109.47181 * 335.00438 * 18 14 11 37 37 H 1.08002 * 120.79094 * 0.02562 * 20 19 18 38 38 H 1.08002 * 120.41913 * 180.21930 * 21 20 19 39 39 H 1.08005 * 119.62097 * 179.74779 * 22 21 20 40 40 H 1.08004 * 119.61994 * 179.97438 * 24 23 22 41 41 H 1.09000 * 117.50124 * 0.02562 * 25 9 7 42 42 H 1.09003 * 117.49892 * 145.02254 * 25 9 7 43 43 H 1.08999 * 117.49975 * 214.98199 * 26 9 7 44 44 H 1.09008 * 117.49558 * 359.96758 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6965 1.2126 6 1 3.1029 1.6965 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0782 -1.1976 0.1159 9 6 1.2599 -2.4939 -0.1634 10 6 0.6784 -3.0869 1.1216 11 16 2.0207 -3.4190 2.2957 12 8 2.9271 -4.3734 1.7600 13 8 2.4888 -2.2081 2.8735 14 7 1.2860 -4.2126 3.5497 15 6 0.7362 -3.4532 4.6754 16 6 -0.7548 -3.2018 4.4414 17 8 -1.4547 -4.4477 4.4481 18 6 1.1857 -5.6740 3.5334 19 6 2.3361 -6.2652 4.3067 20 6 3.5250 -6.5797 3.6658 21 6 4.5579 -7.1173 4.4182 22 6 4.3661 -7.3305 5.7703 23 7 3.2199 -7.0238 6.3456 24 6 2.2176 -6.5063 5.6622 25 6 1.7683 -3.4710 -1.2254 26 6 0.4680 -2.6973 -1.4567 27 1 -0.4849 -0.8374 -0.0668 28 1 -0.0236 -2.3795 1.5629 29 1 0.1597 -4.0173 0.8902 30 1 0.8688 -4.0213 5.5962 31 1 1.2568 -2.4992 4.7590 32 1 -1.1441 -2.5621 5.2335 33 1 -0.8937 -2.7121 3.4776 34 1 -2.4074 -4.3644 4.3048 35 1 0.2450 -5.9789 3.9919 36 1 1.2197 -6.0291 2.5034 37 1 3.6448 -6.4062 2.6066 38 1 5.4989 -7.3708 3.9527 39 1 5.1643 -7.7527 6.3627 40 1 1.2934 -6.2683 6.1678 41 1 2.6416 -3.1738 -1.8059 42 1 1.6881 -4.5363 -1.0087 43 1 -0.4670 -3.2537 -1.3921 44 1 0.4853 -1.8904 -2.1895 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346454116.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:34 Heat of formation + Delta-G solvation = -86.923196 kcal Electronic energy + Delta-G solvation = -28990.351515 eV Core-core repulsion = 25034.706666 eV Total energy + Delta-G solvation = -3955.644849 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.12005 -38.91366 -38.62824 -38.08771 -36.90747 -36.48271 -34.06543 -33.58282 -32.56288 -30.06938 -30.01424 -27.11647 -26.80133 -24.56272 -23.59328 -23.17844 -22.86595 -21.61806 -19.86298 -18.95407 -18.84269 -18.07834 -17.84724 -17.55297 -17.20140 -17.06465 -16.32638 -16.12665 -15.82744 -15.65593 -15.16637 -15.03380 -14.89720 -14.59264 -14.38580 -14.24445 -13.98956 -13.76278 -13.65579 -13.59485 -13.11344 -12.99832 -12.90040 -12.69879 -12.52174 -12.46066 -12.37039 -12.30161 -12.08277 -11.95046 -11.52757 -10.88202 -10.75559 -10.60785 -10.55321 -10.53189 -10.30253 -10.03137 -9.88017 -8.63701 -6.41634 -0.66967 0.15095 0.34070 1.50843 1.57053 1.76282 1.86673 2.51850 2.86139 2.92591 3.10198 3.14677 3.29174 3.39614 3.54534 3.59356 3.85294 3.87057 4.02268 4.03489 4.10206 4.19194 4.20284 4.31715 4.36648 4.40849 4.49155 4.54681 4.61403 4.66660 4.80072 4.84719 4.88560 4.90800 4.99867 5.06163 5.23220 5.26168 5.39108 5.39917 5.60417 5.78683 5.99239 6.13630 6.62867 6.93520 6.99930 7.40712 8.78107 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014726 B = 0.004146 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.885783 B = 6751.629000 C = 7196.904425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.001 3.999 3 Si 1.089 2.911 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.605 4.605 8 H 0.037 0.963 9 C -0.013 4.013 10 C -0.561 4.561 11 S 2.622 3.378 12 O -0.980 6.980 13 O -0.991 6.991 14 N -0.988 5.988 15 C 0.107 3.893 16 C 0.058 3.942 17 O -0.573 6.573 18 C 0.169 3.831 19 C -0.166 4.166 20 C -0.076 4.076 21 C -0.180 4.180 22 C 0.091 3.909 23 N -0.510 5.510 24 C 0.106 3.894 25 C -0.179 4.179 26 C -0.158 4.158 27 H 0.271 0.729 28 H 0.114 0.886 29 H 0.135 0.865 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.034 0.966 34 H 0.395 0.605 35 H 0.125 0.875 36 H 0.089 0.911 37 H 0.139 0.861 38 H 0.156 0.844 39 H 0.182 0.818 40 H 0.172 0.828 41 H 0.081 0.919 42 H 0.104 0.896 43 H 0.097 0.903 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.982 -13.651 9.571 16.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.202 4.202 3 Si 0.912 3.088 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.642 4.642 8 H 0.055 0.945 9 C -0.015 4.015 10 C -0.693 4.693 11 S 2.720 3.280 12 O -0.970 6.970 13 O -0.981 6.981 14 N -0.824 5.824 15 C -0.018 4.018 16 C -0.022 4.022 17 O -0.381 6.381 18 C 0.044 3.956 19 C -0.170 4.170 20 C -0.103 4.103 21 C -0.200 4.200 22 C -0.066 4.066 23 N -0.219 5.219 24 C -0.051 4.051 25 C -0.216 4.216 26 C -0.197 4.197 27 H 0.082 0.918 28 H 0.133 0.867 29 H 0.153 0.847 30 H 0.124 0.876 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.052 0.948 34 H 0.245 0.755 35 H 0.143 0.857 36 H 0.107 0.893 37 H 0.157 0.843 38 H 0.174 0.826 39 H 0.199 0.801 40 H 0.189 0.811 41 H 0.100 0.900 42 H 0.122 0.878 43 H 0.115 0.885 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.783 -12.174 10.621 16.175 hybrid contribution -0.785 -0.920 -1.556 1.970 sum -1.568 -13.094 9.065 16.003 Atomic orbital electron populations 1.70849 1.07150 1.31403 1.45535 1.26773 0.96668 1.05015 0.91721 0.83311 0.74889 0.72864 0.77775 1.19842 1.20708 1.19386 1.21552 0.93979 0.91830 1.56851 0.94472 1.18651 1.01141 0.95576 0.86122 1.30063 1.17359 1.08804 1.13043 1.04490 0.76457 0.72636 0.74457 1.93424 1.61123 1.61884 1.80558 1.93470 1.79518 1.48735 1.76356 1.57537 1.75983 1.14423 1.34466 1.21632 0.92508 0.97444 0.90258 1.22654 0.92203 0.86662 1.00674 1.86372 1.25769 1.29968 1.95984 1.20267 0.97128 0.77300 1.00880 1.21431 0.97659 1.01368 0.96533 1.22077 0.92825 0.93517 1.01858 1.22477 1.00791 1.00838 0.95860 1.23257 0.95040 0.95419 0.92890 1.67744 1.01467 1.12263 1.40456 1.22947 0.97930 0.93718 0.90477 1.23104 0.97649 0.96886 1.03944 1.22753 0.94699 1.01813 1.00413 0.91796 0.86738 0.84691 0.87602 0.89081 0.90222 0.94778 0.75534 0.85748 0.89257 0.84332 0.82611 0.80081 0.81106 0.90049 0.87815 0.88517 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.68 13.57 21.45 0.29 -51.39 16 2 C 0.00 0.07 5.39 84.65 0.46 0.53 16 3 Si 1.09 50.58 29.91 68.60 2.05 52.64 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 7 C -0.60 -33.47 7.90 25.60 0.20 -33.27 16 8 H 0.04 2.17 7.82 -2.91 -0.02 2.14 16 9 C -0.01 -0.60 0.95 -52.93 -0.05 -0.65 16 10 C -0.56 -22.11 5.95 71.98 0.43 -21.68 16 11 S 2.62 103.84 5.01 -56.49 -0.28 103.55 16 12 O -0.98 -40.24 14.91 -127.65 -1.90 -42.15 16 13 O -0.99 -48.14 16.04 -127.65 -2.05 -50.19 16 14 N -0.99 -28.76 2.69 -519.85 -1.40 -30.15 16 15 C 0.11 2.73 6.10 86.38 0.53 3.25 16 16 C 0.06 1.22 7.39 71.98 0.53 1.76 16 17 O -0.57 -9.94 11.98 -148.98 -1.78 -11.72 16 18 C 0.17 4.10 5.27 85.63 0.45 4.55 16 19 C -0.17 -4.28 5.48 -19.77 -0.11 -4.38 16 20 C -0.08 -2.08 9.26 22.47 0.21 -1.87 16 21 C -0.18 -4.11 10.11 22.36 0.23 -3.88 16 22 C 0.09 1.98 11.18 84.69 0.95 2.93 16 23 N -0.51 -12.91 10.36 -195.84 -2.03 -14.94 16 24 C 0.11 2.55 10.56 84.67 0.89 3.45 16 25 C -0.18 -7.36 9.95 30.62 0.30 -7.06 16 26 C -0.16 -6.72 8.75 30.62 0.27 -6.45 16 27 H 0.27 14.88 6.17 -92.71 -0.57 14.31 16 28 H 0.11 4.71 6.78 -2.39 -0.02 4.70 16 29 H 0.13 4.22 8.11 -2.39 -0.02 4.20 16 30 H 0.11 2.23 7.65 -2.39 -0.02 2.21 16 31 H 0.09 2.68 6.82 -2.39 -0.02 2.66 16 32 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.03 0.85 7.10 -2.39 -0.02 0.83 16 34 H 0.39 3.77 9.12 -74.05 -0.68 3.10 16 35 H 0.12 2.45 6.55 -2.39 -0.02 2.43 16 36 H 0.09 2.09 7.56 -2.39 -0.02 2.07 16 37 H 0.14 4.11 6.60 -2.91 -0.02 4.09 16 38 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 39 H 0.18 2.70 8.06 -2.91 -0.02 2.67 16 40 H 0.17 3.28 7.91 -2.91 -0.02 3.26 16 41 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 42 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 43 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 44 H 0.07 3.15 8.14 -2.38 -0.02 3.13 16 Total: -1.00 -74.27 375.04 -1.27 -75.54 By element: Atomic # 1 Polarization: 31.04 SS G_CDS: 0.54 Total: 31.58 kcal Atomic # 6 Polarization: -68.06 SS G_CDS: 5.29 Total: -62.78 kcal Atomic # 7 Polarization: -93.34 SS G_CDS: -3.13 Total: -96.48 kcal Atomic # 8 Polarization: -98.32 SS G_CDS: -5.74 Total: -104.06 kcal Atomic # 14 Polarization: 50.58 SS G_CDS: 2.05 Total: 52.64 kcal Atomic # 16 Polarization: 103.84 SS G_CDS: -0.28 Total: 103.55 kcal Total: -74.27 -1.27 -75.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346454116.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.382 kcal (2) G-P(sol) polarization free energy of solvation -74.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds