Wall clock time and date at job start Tue Mar 31 2020 22:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99696 * 2 1 4 4 H 1.48507 * 109.47491 * 270.00097 * 3 2 1 5 5 H 1.48503 * 109.47360 * 30.00282 * 3 2 1 6 6 H 1.48499 * 109.47230 * 150.00222 * 3 2 1 7 7 C 1.37871 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99682 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00049 * 359.97438 * 7 2 1 10 10 C 1.53009 * 109.46995 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46724 * 180.02562 * 10 9 7 12 12 N 1.46509 * 109.46763 * 179.97438 * 11 10 9 13 13 C 1.34775 * 119.99594 * 179.97438 * 12 11 10 14 14 O 1.21574 * 120.00434 * 0.02562 * 13 12 11 15 15 N 1.34785 * 119.99461 * 179.97438 * 13 12 11 16 16 C 1.46497 * 119.99785 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47168 * 180.02562 * 16 15 13 18 18 H 1.08998 * 109.47158 * 55.00272 * 17 16 15 19 19 C 1.52999 * 109.47157 * 295.00380 * 17 16 15 20 20 O 1.42903 * 109.47256 * 65.00201 * 19 17 16 21 21 C 1.50697 * 109.47366 * 175.00199 * 17 16 15 22 22 C 1.38241 * 120.00337 * 60.00370 * 21 17 16 23 23 C 1.38225 * 120.01164 * 179.97438 * 22 21 17 24 24 C 1.38258 * 120.02728 * 0.04114 * 23 22 21 25 25 C 1.38203 * 120.01129 * 359.97438 * 24 23 22 26 26 C 1.38328 * 120.01025 * 239.73173 * 21 17 16 27 27 Cl 1.73601 * 120.01088 * 359.97303 * 26 21 17 28 28 H 0.97005 * 119.99928 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47276 * 60.00984 * 9 7 2 30 30 H 1.09000 * 109.47613 * 300.00306 * 9 7 2 31 31 H 1.08996 * 109.46981 * 60.00488 * 10 9 7 32 32 H 1.09001 * 109.47207 * 299.99937 * 10 9 7 33 33 H 1.08996 * 109.47185 * 60.00378 * 11 10 9 34 34 H 1.09000 * 109.47556 * 299.99764 * 11 10 9 35 35 H 0.96998 * 119.99544 * 359.97438 * 12 11 10 36 36 H 0.97000 * 120.00019 * 0.02562 * 15 13 12 37 37 H 1.09009 * 109.46758 * 60.00495 * 16 15 13 38 38 H 1.08991 * 109.47474 * 300.00706 * 16 15 13 39 39 H 1.08997 * 109.47286 * 304.99761 * 19 17 16 40 40 H 1.09008 * 109.47201 * 184.99542 * 19 17 16 41 41 H 0.96700 * 114.00311 * 180.02562 * 20 19 17 42 42 H 1.08002 * 119.99178 * 0.02562 * 22 21 17 43 43 H 1.07999 * 119.98365 * 180.02562 * 23 22 21 44 44 H 1.08000 * 119.99534 * 179.97438 * 24 23 22 45 45 H 1.07998 * 120.00130 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 7 2.4325 -6.1006 -0.0018 13 6 1.9832 -7.3712 -0.0019 14 8 0.7879 -7.5934 -0.0020 15 7 2.8591 -8.3957 -0.0030 16 6 2.3708 -9.7769 -0.0025 17 6 3.5608 -10.7385 -0.0034 18 1 4.2144 -10.5084 0.8380 19 6 4.3397 -10.5849 -1.3112 20 8 4.9110 -9.2766 -1.3746 21 6 3.0620 -12.1551 0.1209 22 6 2.2119 -12.6752 -0.8372 23 6 1.7547 -13.9747 -0.7237 24 6 2.1466 -14.7548 0.3484 25 6 2.9962 -14.2358 1.3069 26 6 3.4592 -12.9371 1.1905 27 17 4.5329 -12.2872 2.3899 28 1 -0.4850 0.8401 0.0004 29 1 0.6242 -2.5567 -0.8904 30 1 0.6247 -2.5571 0.8896 31 1 2.8720 -3.6043 0.8895 32 1 2.8721 -3.6043 -0.8905 33 1 0.8541 -5.0445 -0.8914 34 1 0.8534 -5.0451 0.8886 35 1 3.3861 -5.9232 -0.0021 36 1 3.8127 -8.2184 -0.0033 37 1 1.7642 -9.9480 -0.8920 38 1 1.7662 -9.9482 0.8880 39 1 3.6648 -10.7280 -2.1551 40 1 5.1340 -11.3304 -1.3508 41 1 5.4201 -9.1082 -2.1794 42 1 1.9056 -12.0663 -1.6749 43 1 1.0909 -14.3807 -1.4726 44 1 1.7888 -15.7700 0.4368 45 1 3.3026 -14.8455 2.1441 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352903590.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:23 Heat of formation + Delta-G solvation = -81.498043 kcal Electronic energy + Delta-G solvation = -26069.305748 eV Core-core repulsion = 22111.852445 eV Total energy + Delta-G solvation = -3957.453303 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.42571 -39.50836 -37.69675 -36.89784 -35.56888 -34.87431 -33.36297 -32.99876 -31.24512 -31.02719 -29.24876 -26.88018 -25.59289 -23.93767 -23.12726 -22.67124 -20.81115 -20.63963 -20.23980 -18.35683 -17.58685 -17.27489 -16.69281 -16.33509 -15.85940 -15.61322 -15.50238 -15.08011 -14.73417 -14.45298 -14.30669 -14.10815 -14.03044 -13.76225 -13.63795 -13.37403 -12.98107 -12.44991 -12.23478 -12.02705 -11.98052 -11.73812 -11.69362 -11.64286 -11.31285 -11.01806 -10.86258 -10.64926 -10.54867 -10.36435 -9.96076 -9.78893 -9.46203 -9.36853 -9.17880 -9.07269 -8.99545 -8.42098 -8.32928 -5.97665 -4.00474 0.60872 0.71586 1.67288 2.92845 3.07310 3.33477 3.39676 3.42776 3.55305 3.71691 4.11699 4.31766 4.43187 4.47234 4.51978 4.62972 4.77499 4.79593 4.83380 4.85760 5.12174 5.16833 5.22941 5.37935 5.40308 5.57868 5.67058 5.71104 5.82751 5.89496 5.90878 5.93235 6.25317 6.27774 6.64622 6.68392 6.71225 6.93912 7.11210 7.16301 7.35940 7.69156 7.82770 8.01843 8.37664 8.43080 8.94595 9.06346 9.63323 11.13617 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.023710 B = 0.001719 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.655515 B =16282.944054 C =16520.270456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.136 3.864 12 N -0.742 5.742 13 C 0.699 3.301 14 O -0.601 6.601 15 N -0.740 5.740 16 C 0.157 3.843 17 C -0.071 4.071 18 H 0.104 0.896 19 C 0.089 3.911 20 O -0.569 6.569 21 C -0.067 4.067 22 C -0.099 4.099 23 C -0.112 4.112 24 C -0.107 4.107 25 C -0.109 4.109 26 C -0.028 4.028 27 Cl -0.062 7.062 28 H 0.261 0.739 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.394 0.606 36 H 0.405 0.595 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.385 0.615 42 H 0.135 0.865 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.860 -34.285 -1.774 36.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.013 3.987 12 N -0.396 5.396 13 C 0.399 3.601 14 O -0.480 6.480 15 N -0.400 5.400 16 C 0.032 3.968 17 C -0.090 4.090 18 H 0.122 0.878 19 C 0.011 3.989 20 O -0.376 6.376 21 C -0.068 4.068 22 C -0.117 4.117 23 C -0.130 4.130 24 C -0.125 4.125 25 C -0.128 4.128 26 C -0.054 4.054 27 Cl -0.033 7.033 28 H 0.070 0.930 29 H 0.037 0.963 30 H 0.038 0.962 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.227 0.773 36 H 0.243 0.757 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.233 0.767 42 H 0.152 0.848 43 H 0.149 0.851 44 H 0.151 0.849 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 9.396 -34.235 -1.084 35.517 hybrid contribution 1.639 1.003 -0.428 1.968 sum 11.034 -33.232 -1.511 35.048 Atomic orbital electron populations 1.69975 1.06033 1.26608 1.50674 1.25036 0.94865 0.99279 0.95367 0.86582 0.79791 0.83476 0.78043 1.20701 1.21239 1.19925 1.21215 0.92994 0.90973 1.50745 0.92658 1.19033 0.93884 0.90828 0.97674 1.21885 0.99751 0.93386 1.00792 1.21472 0.91323 0.84225 1.01722 1.45342 1.10356 1.04428 1.79500 1.16027 0.85240 0.80873 0.77992 1.90896 1.14357 1.84283 1.58436 1.45109 1.09786 1.04362 1.80726 1.20981 0.94021 0.79623 1.02223 1.20484 0.97730 0.90780 1.00015 0.87800 1.22136 0.95995 0.84566 0.96186 1.86263 1.72309 1.32416 1.46609 1.19309 0.98449 0.94678 0.94389 1.21092 0.96353 0.95752 0.98515 1.21290 0.99448 0.93976 0.98254 1.21179 0.97125 1.00319 0.93906 1.21076 0.98027 0.93557 1.00139 1.20864 0.97471 0.94616 0.92491 1.98386 1.63377 1.86153 1.55367 0.92976 0.96258 0.96246 0.92797 0.92810 0.92120 0.92102 0.77327 0.75747 0.91832 0.91695 0.93086 0.93260 0.76653 0.84764 0.85073 0.84948 0.84748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.18 13.29 55.43 0.74 -26.45 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.45 5.27 -26.73 -0.14 -2.59 16 11 C 0.14 2.57 5.67 -4.04 -0.02 2.55 16 12 N -0.74 -11.78 5.56 -65.22 -0.36 -12.15 16 13 C 0.70 11.73 8.57 -86.91 -0.74 10.98 16 14 O -0.60 -12.59 16.34 5.30 0.09 -12.51 16 15 N -0.74 -9.30 5.01 -65.23 -0.33 -9.62 16 16 C 0.16 1.73 4.80 -4.04 -0.02 1.71 16 17 C -0.07 -0.58 2.36 -91.77 -0.22 -0.80 16 18 H 0.10 0.92 6.17 -51.93 -0.32 0.60 16 19 C 0.09 0.58 6.17 37.16 0.23 0.81 16 20 O -0.57 -3.85 10.88 -35.23 -0.38 -4.24 16 21 C -0.07 -0.51 4.78 -104.59 -0.50 -1.01 16 22 C -0.10 -0.64 8.81 -39.58 -0.35 -0.99 16 23 C -0.11 -0.60 10.05 -39.58 -0.40 -1.00 16 24 C -0.11 -0.56 10.05 -39.59 -0.40 -0.95 16 25 C -0.11 -0.68 9.83 -39.55 -0.39 -1.07 16 26 C -0.03 -0.21 6.31 -39.50 -0.25 -0.46 16 27 Cl -0.06 -0.51 27.01 -51.86 -1.40 -1.91 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.39 5.15 8.49 -40.82 -0.35 4.81 16 36 H 0.40 4.40 6.30 -40.82 -0.26 4.14 16 37 H 0.06 0.72 7.57 -51.92 -0.39 0.33 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.05 0.30 7.57 -51.93 -0.39 -0.09 16 40 H 0.05 0.28 8.14 -51.92 -0.42 -0.15 16 41 H 0.38 1.17 9.12 45.56 0.42 1.59 16 42 H 0.13 0.73 7.23 -52.49 -0.38 0.35 16 43 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 44 H 0.13 0.39 8.06 -52.49 -0.42 -0.04 16 45 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 LS Contribution 388.96 15.07 5.86 5.86 Total: -1.00 -35.31 388.96 -10.42 -45.73 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -5.87 Total: 4.47 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -3.75 Total: -5.94 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: 0.05 Total: -48.22 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.30 Total: -16.74 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.40 Total: -1.91 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.31 -10.42 -45.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352903590.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.770 kcal (2) G-P(sol) polarization free energy of solvation -35.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds