Wall clock time and date at job start Tue Mar 31 2020 22:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99696 * 2 1 4 4 H 1.48507 * 109.47491 * 270.00097 * 3 2 1 5 5 H 1.48503 * 109.47360 * 30.00282 * 3 2 1 6 6 H 1.48499 * 109.47230 * 150.00222 * 3 2 1 7 7 C 1.37871 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99682 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00049 * 359.97438 * 7 2 1 10 10 C 1.53009 * 109.46995 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46724 * 180.02562 * 10 9 7 12 12 N 1.46509 * 109.46763 * 179.97438 * 11 10 9 13 13 C 1.34775 * 119.99594 * 179.97438 * 12 11 10 14 14 O 1.21574 * 120.00434 * 0.02562 * 13 12 11 15 15 N 1.34785 * 119.99461 * 179.97438 * 13 12 11 16 16 C 1.46497 * 119.99785 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47168 * 180.02562 * 16 15 13 18 18 H 1.08998 * 109.47158 * 55.00272 * 17 16 15 19 19 C 1.52999 * 109.47157 * 295.00380 * 17 16 15 20 20 O 1.42903 * 109.47256 * 65.00201 * 19 17 16 21 21 C 1.50697 * 109.47366 * 175.00199 * 17 16 15 22 22 C 1.38241 * 120.00337 * 60.00370 * 21 17 16 23 23 C 1.38225 * 120.01164 * 179.97438 * 22 21 17 24 24 C 1.38258 * 120.02728 * 0.04114 * 23 22 21 25 25 C 1.38203 * 120.01129 * 359.97438 * 24 23 22 26 26 C 1.38328 * 120.01025 * 239.73173 * 21 17 16 27 27 Cl 1.73601 * 120.01088 * 359.97303 * 26 21 17 28 28 H 0.97005 * 119.99928 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47276 * 60.00984 * 9 7 2 30 30 H 1.09000 * 109.47613 * 300.00306 * 9 7 2 31 31 H 1.08996 * 109.46981 * 60.00488 * 10 9 7 32 32 H 1.09001 * 109.47207 * 299.99937 * 10 9 7 33 33 H 1.08996 * 109.47185 * 60.00378 * 11 10 9 34 34 H 1.09000 * 109.47556 * 299.99764 * 11 10 9 35 35 H 0.96998 * 119.99544 * 359.97438 * 12 11 10 36 36 H 0.97000 * 120.00019 * 0.02562 * 15 13 12 37 37 H 1.09009 * 109.46758 * 60.00495 * 16 15 13 38 38 H 1.08991 * 109.47474 * 300.00706 * 16 15 13 39 39 H 1.08997 * 109.47286 * 304.99761 * 19 17 16 40 40 H 1.09008 * 109.47201 * 184.99542 * 19 17 16 41 41 H 0.96700 * 114.00311 * 180.02562 * 20 19 17 42 42 H 1.08002 * 119.99178 * 0.02562 * 22 21 17 43 43 H 1.07999 * 119.98365 * 180.02562 * 23 22 21 44 44 H 1.08000 * 119.99534 * 179.97438 * 24 23 22 45 45 H 1.07998 * 120.00130 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 7 2.4325 -6.1006 -0.0018 13 6 1.9832 -7.3712 -0.0019 14 8 0.7879 -7.5934 -0.0020 15 7 2.8591 -8.3957 -0.0030 16 6 2.3708 -9.7769 -0.0025 17 6 3.5608 -10.7385 -0.0034 18 1 4.2144 -10.5084 0.8380 19 6 4.3397 -10.5849 -1.3112 20 8 4.9110 -9.2766 -1.3746 21 6 3.0620 -12.1551 0.1209 22 6 2.2119 -12.6752 -0.8372 23 6 1.7547 -13.9747 -0.7237 24 6 2.1466 -14.7548 0.3484 25 6 2.9962 -14.2358 1.3069 26 6 3.4592 -12.9371 1.1905 27 17 4.5329 -12.2872 2.3899 28 1 -0.4850 0.8401 0.0004 29 1 0.6242 -2.5567 -0.8904 30 1 0.6247 -2.5571 0.8896 31 1 2.8720 -3.6043 0.8895 32 1 2.8721 -3.6043 -0.8905 33 1 0.8541 -5.0445 -0.8914 34 1 0.8534 -5.0451 0.8886 35 1 3.3861 -5.9232 -0.0021 36 1 3.8127 -8.2184 -0.0033 37 1 1.7642 -9.9480 -0.8920 38 1 1.7662 -9.9482 0.8880 39 1 3.6648 -10.7280 -2.1551 40 1 5.1340 -11.3304 -1.3508 41 1 5.4201 -9.1082 -2.1794 42 1 1.9056 -12.0663 -1.6749 43 1 1.0909 -14.3807 -1.4726 44 1 1.7888 -15.7700 0.4368 45 1 3.3026 -14.8455 2.1441 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352903590.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:23 Heat of formation + Delta-G solvation = -106.258067 kcal Electronic energy + Delta-G solvation = -26070.379424 eV Core-core repulsion = 22111.852445 eV Total energy + Delta-G solvation = -3958.526979 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.22446 -40.53328 -38.33252 -37.45183 -37.00137 -35.88087 -35.16113 -34.09761 -32.78887 -31.69490 -29.95526 -28.52213 -26.65697 -24.88279 -24.30025 -23.43323 -22.27748 -21.79502 -21.35496 -19.32702 -18.52444 -18.40080 -17.73910 -17.41636 -17.04614 -16.67873 -16.46301 -16.14039 -15.87767 -15.68339 -15.31316 -15.20175 -14.88676 -14.74517 -14.31655 -14.26128 -13.98860 -13.89798 -13.70095 -13.43358 -13.05249 -12.73423 -12.55357 -12.52973 -12.49751 -12.35001 -12.26835 -11.89922 -11.68895 -11.65067 -11.56838 -11.28183 -11.12646 -10.85050 -10.53937 -10.33530 -9.91999 -9.69254 -9.66861 -8.17960 -6.29464 0.13114 0.25976 1.13288 1.42370 1.44098 1.55032 1.75893 2.19329 2.43160 2.61324 3.07040 3.15526 3.50713 3.58937 3.79680 3.96049 4.06592 4.18635 4.21530 4.24457 4.25545 4.37358 4.39504 4.53929 4.58373 4.60528 4.68527 4.81644 4.92590 4.97241 4.98024 5.02744 5.18621 5.27072 5.39763 5.46758 5.49224 5.56328 5.59576 5.72873 5.84060 5.85790 6.10284 6.24506 6.87547 6.90231 7.21601 7.39857 7.64426 8.94174 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.023710 B = 0.001719 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.655515 B =16282.944054 C =16520.270456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.023 3.977 10 C -0.100 4.100 11 C 0.150 3.850 12 N -0.730 5.730 13 C 0.695 3.305 14 O -0.645 6.645 15 N -0.720 5.720 16 C 0.157 3.843 17 C -0.061 4.061 18 H 0.096 0.904 19 C 0.092 3.908 20 O -0.585 6.585 21 C -0.079 4.079 22 C -0.107 4.107 23 C -0.113 4.113 24 C -0.105 4.105 25 C -0.117 4.117 26 C -0.043 4.043 27 Cl -0.074 7.074 28 H 0.263 0.737 29 H -0.007 1.007 30 H -0.008 1.008 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.046 0.954 34 H 0.044 0.956 35 H 0.411 0.589 36 H 0.416 0.584 37 H 0.062 0.938 38 H 0.046 0.954 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.402 0.598 42 H 0.142 0.858 43 H 0.154 0.846 44 H 0.158 0.842 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.825 -35.322 -2.445 37.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.185 1.185 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.014 4.014 10 C -0.138 4.138 11 C 0.026 3.974 12 N -0.386 5.386 13 C 0.395 3.605 14 O -0.528 6.528 15 N -0.379 5.379 16 C 0.032 3.968 17 C -0.079 4.079 18 H 0.114 0.886 19 C 0.014 3.986 20 O -0.395 6.395 21 C -0.081 4.081 22 C -0.125 4.125 23 C -0.130 4.130 24 C -0.123 4.123 25 C -0.135 4.135 26 C -0.070 4.070 27 Cl -0.045 7.045 28 H 0.072 0.928 29 H 0.011 0.989 30 H 0.010 0.990 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.247 0.753 36 H 0.256 0.744 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.253 0.747 42 H 0.160 0.840 43 H 0.171 0.829 44 H 0.176 0.824 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 11.445 -35.302 -1.767 37.153 hybrid contribution 0.984 1.227 -0.233 1.590 sum 12.428 -34.075 -1.999 36.326 Atomic orbital electron populations 1.70123 1.07938 1.27758 1.51702 1.26044 0.95780 1.03599 0.94818 0.85392 0.78633 0.78203 0.78458 1.19760 1.21050 1.18475 1.21678 0.93758 0.91976 1.50413 0.91510 1.18949 0.94452 0.92941 0.95104 1.21589 0.98433 0.91673 1.02090 1.21064 0.91352 0.84682 1.00334 1.45008 1.10732 1.03552 1.79309 1.16203 0.85019 0.81515 0.77800 1.90867 1.16512 1.84943 1.60480 1.45002 1.09790 1.04119 1.79019 1.21069 0.95309 0.79209 1.01218 1.20352 0.96320 0.90463 1.00815 0.88615 1.22105 0.96314 0.84830 0.95311 1.86187 1.72725 1.32524 1.48041 1.19306 0.99412 0.94325 0.95040 1.21273 0.96202 0.96513 0.98522 1.21615 0.99207 0.93499 0.98723 1.21525 0.96181 1.01423 0.93172 1.21326 0.98112 0.93177 1.00904 1.21031 0.98069 0.95413 0.92490 1.98375 1.63857 1.86406 1.55893 0.92838 0.98864 0.98991 0.91491 0.91279 0.93522 0.93743 0.75333 0.74419 0.92007 0.93556 0.92324 0.92076 0.74695 0.84033 0.82856 0.82407 0.83568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.86 13.29 21.45 0.28 -57.58 16 2 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 3 Si 0.97 44.33 29.54 68.60 2.03 46.36 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.54 -30.65 9.11 25.60 0.23 -30.41 16 8 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 9 C 0.02 1.24 4.97 29.85 0.15 1.39 16 10 C -0.10 -4.01 5.27 30.60 0.16 -3.85 16 11 C 0.15 5.73 5.67 86.38 0.49 6.22 16 12 N -0.73 -22.61 5.56 -478.53 -2.66 -25.27 16 13 C 0.70 23.17 8.57 179.05 1.53 24.71 16 14 O -0.65 -27.57 16.34 -3.95 -0.06 -27.63 16 15 N -0.72 -17.61 5.01 -478.55 -2.40 -20.01 16 16 C 0.16 3.44 4.80 86.38 0.41 3.85 16 17 C -0.06 -0.94 2.36 -11.54 -0.03 -0.97 16 18 H 0.10 1.66 6.17 -2.39 -0.01 1.64 16 19 C 0.09 1.05 6.17 71.98 0.44 1.50 16 20 O -0.59 -6.85 10.88 -148.98 -1.62 -8.48 16 21 C -0.08 -1.14 4.78 -19.84 -0.09 -1.24 16 22 C -0.11 -1.24 8.81 22.27 0.20 -1.04 16 23 C -0.11 -0.98 10.05 22.27 0.22 -0.75 16 24 C -0.11 -0.86 10.05 22.27 0.22 -0.64 16 25 C -0.12 -1.30 9.83 22.29 0.22 -1.09 16 26 C -0.04 -0.64 6.31 22.32 0.14 -0.50 16 27 Cl -0.07 -1.20 27.01 -2.72 -0.07 -1.27 16 28 H 0.26 15.28 8.31 -92.70 -0.77 14.51 16 29 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 30 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 31 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.41 9.95 8.49 -92.71 -0.79 9.16 16 36 H 0.42 8.45 6.30 -92.71 -0.58 7.87 16 37 H 0.06 1.39 7.57 -2.38 -0.02 1.37 16 38 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.06 0.59 7.57 -2.39 -0.02 0.57 16 40 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 41 H 0.40 1.60 9.12 -74.06 -0.68 0.92 16 42 H 0.14 1.35 7.23 -2.91 -0.02 1.33 16 43 H 0.15 0.60 8.06 -2.91 -0.02 0.58 16 44 H 0.16 0.44 8.06 -2.91 -0.02 0.41 16 45 H 0.15 1.19 8.06 -2.91 -0.02 1.16 16 Total: -1.00 -77.15 388.96 -0.75 -77.90 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -1.02 Total: 18.62 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 4.77 Total: -2.65 kcal Atomic # 7 Polarization: -98.08 SS G_CDS: -4.77 Total: -102.86 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -1.69 Total: -36.11 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.07 Total: -1.27 kcal Total: -77.15 -0.75 -77.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352903590.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.355 kcal (2) G-P(sol) polarization free energy of solvation -77.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds