Wall clock time and date at job start Tue Mar 31 2020 22:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00212 * 2 1 4 4 H 1.48503 * 109.46742 * 94.53535 * 3 2 1 5 5 H 1.48500 * 109.47460 * 214.53151 * 3 2 1 6 6 H 1.48499 * 109.46928 * 334.53536 * 3 2 1 7 7 C 1.37886 * 120.00030 * 180.28070 * 2 1 3 8 8 H 1.08002 * 119.99771 * 6.61783 * 7 2 1 9 9 C 1.50698 * 120.00006 * 186.61954 * 7 2 1 10 10 H 1.08995 * 109.47523 * 326.94485 * 9 7 2 11 11 C 1.52999 * 109.47080 * 206.93845 * 9 7 2 12 12 C 1.50700 * 109.47010 * 65.00685 * 11 9 7 13 13 O 1.21282 * 120.00069 * 359.97438 * 12 11 9 14 14 N 1.34777 * 120.00194 * 180.02562 * 12 11 9 15 15 C 1.46505 * 119.99960 * 180.02562 * 14 12 11 16 16 C 1.52993 * 109.47066 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.47399 * 179.97438 * 16 15 14 18 18 S 1.81401 * 109.47445 * 179.97438 * 17 16 15 19 19 N 1.65596 * 104.44765 * 179.97438 * 18 17 16 20 20 O 1.42098 * 110.53996 * 291.62695 * 18 17 16 21 21 O 1.42103 * 110.54074 * 68.37612 * 18 17 16 22 22 C 1.50706 * 109.46664 * 86.94374 * 9 7 2 23 23 C 1.38233 * 119.99857 * 57.92474 * 22 9 7 24 24 C 1.38240 * 119.99757 * 179.78388 * 23 22 9 25 25 C 1.38239 * 119.99979 * 0.44453 * 24 23 22 26 26 C 1.38242 * 120.00017 * 359.80708 * 25 24 23 27 27 C 1.38230 * 119.99928 * 238.19148 * 22 9 7 28 28 H 0.96994 * 119.99996 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47081 * 185.00338 * 11 9 7 30 30 H 1.09000 * 109.47450 * 305.00596 * 11 9 7 31 31 H 0.96995 * 119.99984 * 359.97438 * 14 12 11 32 32 H 1.09000 * 109.46885 * 299.99228 * 15 14 12 33 33 H 1.09000 * 109.47350 * 59.99305 * 15 14 12 34 34 H 1.09000 * 109.46918 * 299.99551 * 16 15 14 35 35 H 1.09005 * 109.47577 * 59.99242 * 16 15 14 36 36 H 1.09000 * 109.46973 * 299.99829 * 17 16 15 37 37 H 1.09000 * 109.46929 * 59.99702 * 17 16 15 38 38 H 0.96997 * 120.00422 * 359.97438 * 19 18 17 39 39 H 0.97000 * 119.99749 * 179.97438 * 19 18 17 40 40 H 1.07994 * 120.00554 * 359.97438 * 23 22 9 41 41 H 1.07996 * 120.00426 * 180.26872 * 24 23 22 42 42 H 1.08000 * 120.00114 * 179.82966 * 25 24 23 43 43 H 1.07993 * 120.00100 * 180.02562 * 26 25 24 44 44 H 1.07999 * 120.00162 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5925 1.9909 1.3957 5 1 3.4955 1.4697 -0.7936 6 1 1.4019 2.6784 -0.6020 7 6 2.0045 -1.1941 -0.0059 8 1 1.4699 -2.1258 -0.1182 9 6 3.5040 -1.1992 0.1446 10 1 3.9190 -0.3058 -0.3219 11 6 4.0803 -2.4435 -0.5339 12 6 3.8289 -2.3685 -2.0179 13 8 3.2457 -1.4140 -2.4866 14 7 4.2513 -3.3625 -2.8241 15 6 4.0073 -3.2893 -4.2668 16 6 4.5835 -4.5336 -4.9453 17 6 4.3282 -4.4575 -6.4519 18 16 5.0121 -5.9324 -7.2565 19 7 4.6697 -5.7230 -8.8630 20 8 6.4318 -5.9205 -7.1957 21 8 4.2727 -7.0890 -6.8889 22 6 3.8618 -1.2140 1.6084 23 6 3.4059 -2.2350 2.4211 24 6 3.7379 -2.2510 3.7630 25 6 4.5181 -1.2409 4.2940 26 6 4.9697 -0.2170 3.4823 27 6 4.6413 -0.2035 2.1396 28 1 -0.4850 0.8400 0.0004 29 1 5.1534 -2.4938 -0.3493 30 1 3.5998 -3.3339 -0.1285 31 1 4.7174 -4.1261 -2.4492 32 1 2.9343 -3.2383 -4.4517 33 1 4.4885 -2.3991 -4.6720 34 1 5.6565 -4.5842 -4.7604 35 1 4.1027 -5.4240 -4.5401 36 1 3.2552 -4.4071 -6.6365 37 1 4.8088 -3.5671 -6.8573 38 1 4.1973 -4.9292 -9.1588 39 1 4.9415 -6.3942 -9.5084 40 1 2.7930 -3.0219 2.0072 41 1 3.3854 -3.0509 4.3970 42 1 4.7752 -1.2518 5.3429 43 1 5.5796 0.5719 3.8971 44 1 4.9943 0.5963 1.5055 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354931095.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:57 Heat of formation + Delta-G solvation = -94.454976 kcal Electronic energy + Delta-G solvation = -26571.865284 eV Core-core repulsion = 22615.893832 eV Total energy + Delta-G solvation = -3955.971452 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.30976 -38.41577 -37.34822 -36.29118 -35.93317 -34.08330 -33.60536 -32.80051 -31.66174 -30.21861 -29.17711 -27.17745 -25.45970 -22.77252 -22.18624 -21.82600 -20.35426 -19.78219 -19.17168 -18.04221 -17.67381 -16.98355 -16.65491 -16.55390 -16.10275 -15.78660 -15.57587 -15.16992 -14.59560 -14.47697 -14.11338 -13.83456 -13.20351 -13.17302 -12.97891 -12.72455 -12.59627 -12.51218 -12.44254 -12.32846 -12.29854 -12.23074 -11.93663 -11.86599 -11.41358 -11.08916 -11.02094 -10.86065 -10.81381 -10.51163 -10.36109 -9.91182 -9.62286 -9.19168 -8.99062 -8.71927 -8.45922 -8.21880 -7.82901 -6.00348 -3.96204 -0.17528 2.08598 2.14126 2.45329 3.18620 3.39236 3.40460 3.44865 3.48365 3.53300 3.88892 4.21475 4.46378 4.51148 4.55686 4.56383 4.98250 5.09233 5.26626 5.27207 5.50913 5.54741 5.55004 5.55292 5.67979 5.74238 5.90684 5.92468 5.98563 6.06711 6.23082 6.31961 6.56658 6.58525 6.68493 6.76179 6.81681 7.03046 7.13571 7.25351 7.57908 7.70484 7.81125 7.93772 8.51317 8.92417 8.99371 9.64036 11.12807 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015986 B = 0.002302 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.065037 B =12161.684268 C =13130.204963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.083 3.917 3 Si 0.868 3.132 4 H -0.274 1.274 5 H -0.261 1.261 6 H -0.292 1.292 7 C -0.483 4.483 8 H 0.071 0.929 9 C 0.048 3.952 10 H 0.054 0.946 11 C -0.116 4.116 12 C 0.514 3.486 13 O -0.500 6.500 14 N -0.751 5.751 15 C 0.130 3.870 16 C -0.124 4.124 17 C -0.617 4.617 18 S 2.616 3.384 19 N -1.253 6.253 20 O -0.963 6.963 21 O -0.962 6.962 22 C -0.040 4.040 23 C -0.101 4.101 24 C -0.126 4.126 25 C -0.149 4.149 26 C -0.124 4.124 27 C -0.139 4.139 28 H 0.262 0.738 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.395 0.605 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.413 0.587 39 H 0.419 0.581 40 H 0.120 0.880 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.534 -9.778 -11.194 18.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.119 4.119 3 Si 0.696 3.304 4 H -0.200 1.200 5 H -0.186 1.186 6 H -0.218 1.218 7 C -0.520 4.520 8 H 0.090 0.910 9 C 0.029 3.971 10 H 0.072 0.928 11 C -0.156 4.156 12 C 0.300 3.700 13 O -0.371 6.371 14 N -0.408 5.408 15 C 0.005 3.995 16 C -0.164 4.164 17 C -0.747 4.747 18 S 2.708 3.292 19 N -0.926 5.926 20 O -0.953 6.953 21 O -0.951 6.951 22 C -0.040 4.040 23 C -0.119 4.119 24 C -0.144 4.144 25 C -0.167 4.167 26 C -0.142 4.142 27 C -0.157 4.157 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.229 0.771 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.159 0.841 37 H 0.158 0.842 38 H 0.239 0.761 39 H 0.249 0.751 40 H 0.138 0.862 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 11.416 -9.709 -10.969 18.571 hybrid contribution -0.047 1.357 -0.315 1.394 sum 11.369 -8.351 -11.283 18.064 Atomic orbital electron populations 1.69886 1.06328 1.26829 1.50653 1.24870 0.94493 0.98774 0.93750 0.86954 0.80752 0.84164 0.78538 1.20016 1.18621 1.21839 1.20603 0.87833 0.94576 1.48979 0.91048 1.18243 0.98055 0.94112 0.86726 0.92845 1.21626 1.00576 1.02425 0.90954 1.20859 0.77998 0.81840 0.89262 1.90744 1.37841 1.32153 1.76375 1.46138 1.62703 1.25079 1.06831 1.21099 1.01098 0.96140 0.81202 1.21505 1.03325 1.01218 0.90317 1.30328 1.14537 1.21764 1.08120 1.04687 0.74878 0.76030 0.73613 1.53139 1.76966 1.34401 1.28128 1.93622 1.29634 1.86573 1.85432 1.93629 1.73514 1.45634 1.82345 1.20767 0.91619 0.92671 0.98992 1.20953 0.98812 0.99202 0.92920 1.21061 0.99117 0.98643 0.95606 1.20864 1.01026 0.96007 0.98838 1.20956 1.00830 0.98353 0.94105 1.21056 1.00113 0.99323 0.95214 0.92832 0.91152 0.89618 0.77149 0.91155 0.91488 0.89457 0.89325 0.84083 0.84216 0.76113 0.75101 0.86218 0.87142 0.87387 0.87344 0.87396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 2 C 0.08 2.44 5.47 -17.82 -0.10 2.34 16 3 Si 0.87 22.57 26.62 -169.99 -4.52 18.05 16 4 H -0.27 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.26 -6.62 6.29 56.52 0.36 -6.26 16 6 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 7 C -0.48 -13.16 6.97 -34.44 -0.24 -13.40 16 8 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 9 C 0.05 1.08 1.21 -92.92 -0.11 0.97 16 10 H 0.05 1.30 4.88 -51.93 -0.25 1.05 16 11 C -0.12 -2.08 4.93 -27.88 -0.14 -2.21 16 12 C 0.51 9.59 7.58 -10.99 -0.08 9.51 16 13 O -0.50 -11.86 14.98 5.56 0.08 -11.78 16 14 N -0.75 -10.04 5.56 -60.29 -0.33 -10.37 16 15 C 0.13 1.49 5.67 -4.04 -0.02 1.47 16 16 C -0.12 -0.96 5.34 -26.73 -0.14 -1.10 16 17 C -0.62 -3.18 6.09 37.16 0.23 -2.96 16 18 S 2.62 17.79 5.97 -107.50 -0.64 17.15 16 19 N -1.25 -4.67 9.43 60.35 0.57 -4.10 16 20 O -0.96 -10.29 18.10 -57.54 -1.04 -11.33 16 21 O -0.96 -10.51 18.10 -57.54 -1.04 -11.55 16 22 C -0.04 -0.83 4.52 -104.62 -0.47 -1.30 16 23 C -0.10 -1.95 8.86 -39.58 -0.35 -2.30 16 24 C -0.13 -2.14 10.05 -39.58 -0.40 -2.54 16 25 C -0.15 -2.43 10.05 -39.58 -0.40 -2.83 16 26 C -0.12 -2.15 10.05 -39.58 -0.40 -2.54 16 27 C -0.14 -2.73 9.08 -39.58 -0.36 -3.09 16 28 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.09 1.43 7.69 -51.93 -0.40 1.03 16 31 H 0.40 3.93 8.47 -40.82 -0.35 3.58 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.14 0.50 8.14 -51.92 -0.42 0.08 16 37 H 0.14 0.45 8.14 -51.92 -0.42 0.03 16 38 H 0.41 0.39 8.83 -34.47 -0.30 0.08 16 39 H 0.42 1.29 8.96 -34.46 -0.31 0.98 16 40 H 0.12 2.26 7.72 -52.49 -0.41 1.86 16 41 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 42 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 43 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 44 H 0.11 2.07 7.91 -52.49 -0.42 1.65 16 LS Contribution 381.08 15.07 5.74 5.74 Total: -1.00 -41.15 381.08 -9.67 -50.82 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -6.26 Total: 4.52 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -2.99 Total: -20.00 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: 1.01 Total: -41.63 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -2.00 Total: -34.66 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.52 Total: 18.05 kcal Atomic # 16 Polarization: 17.79 SS G_CDS: -0.64 Total: 17.15 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -41.15 -9.67 -50.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354931095.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.634 kcal (2) G-P(sol) polarization free energy of solvation -41.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds