Wall clock time and date at job start Tue Mar 31 2020 22:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00212 * 2 1 4 4 H 1.48503 * 109.46742 * 94.53535 * 3 2 1 5 5 H 1.48500 * 109.47460 * 214.53151 * 3 2 1 6 6 H 1.48499 * 109.46928 * 334.53536 * 3 2 1 7 7 C 1.37886 * 120.00030 * 180.28070 * 2 1 3 8 8 H 1.08002 * 119.99771 * 6.61783 * 7 2 1 9 9 C 1.50698 * 120.00006 * 186.61954 * 7 2 1 10 10 H 1.08995 * 109.47523 * 326.94485 * 9 7 2 11 11 C 1.52999 * 109.47080 * 206.93845 * 9 7 2 12 12 C 1.50700 * 109.47010 * 65.00685 * 11 9 7 13 13 O 1.21282 * 120.00069 * 359.97438 * 12 11 9 14 14 N 1.34777 * 120.00194 * 180.02562 * 12 11 9 15 15 C 1.46505 * 119.99960 * 180.02562 * 14 12 11 16 16 C 1.52993 * 109.47066 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.47399 * 179.97438 * 16 15 14 18 18 S 1.81401 * 109.47445 * 179.97438 * 17 16 15 19 19 N 1.65596 * 104.44765 * 179.97438 * 18 17 16 20 20 O 1.42098 * 110.53996 * 291.62695 * 18 17 16 21 21 O 1.42103 * 110.54074 * 68.37612 * 18 17 16 22 22 C 1.50706 * 109.46664 * 86.94374 * 9 7 2 23 23 C 1.38233 * 119.99857 * 57.92474 * 22 9 7 24 24 C 1.38240 * 119.99757 * 179.78388 * 23 22 9 25 25 C 1.38239 * 119.99979 * 0.44453 * 24 23 22 26 26 C 1.38242 * 120.00017 * 359.80708 * 25 24 23 27 27 C 1.38230 * 119.99928 * 238.19148 * 22 9 7 28 28 H 0.96994 * 119.99996 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47081 * 185.00338 * 11 9 7 30 30 H 1.09000 * 109.47450 * 305.00596 * 11 9 7 31 31 H 0.96995 * 119.99984 * 359.97438 * 14 12 11 32 32 H 1.09000 * 109.46885 * 299.99228 * 15 14 12 33 33 H 1.09000 * 109.47350 * 59.99305 * 15 14 12 34 34 H 1.09000 * 109.46918 * 299.99551 * 16 15 14 35 35 H 1.09005 * 109.47577 * 59.99242 * 16 15 14 36 36 H 1.09000 * 109.46973 * 299.99829 * 17 16 15 37 37 H 1.09000 * 109.46929 * 59.99702 * 17 16 15 38 38 H 0.96997 * 120.00422 * 359.97438 * 19 18 17 39 39 H 0.97000 * 119.99749 * 179.97438 * 19 18 17 40 40 H 1.07994 * 120.00554 * 359.97438 * 23 22 9 41 41 H 1.07996 * 120.00426 * 180.26872 * 24 23 22 42 42 H 1.08000 * 120.00114 * 179.82966 * 25 24 23 43 43 H 1.07993 * 120.00100 * 180.02562 * 26 25 24 44 44 H 1.07999 * 120.00162 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5925 1.9909 1.3957 5 1 3.4955 1.4697 -0.7936 6 1 1.4019 2.6784 -0.6020 7 6 2.0045 -1.1941 -0.0059 8 1 1.4699 -2.1258 -0.1182 9 6 3.5040 -1.1992 0.1446 10 1 3.9190 -0.3058 -0.3219 11 6 4.0803 -2.4435 -0.5339 12 6 3.8289 -2.3685 -2.0179 13 8 3.2457 -1.4140 -2.4866 14 7 4.2513 -3.3625 -2.8241 15 6 4.0073 -3.2893 -4.2668 16 6 4.5835 -4.5336 -4.9453 17 6 4.3282 -4.4575 -6.4519 18 16 5.0121 -5.9324 -7.2565 19 7 4.6697 -5.7230 -8.8630 20 8 6.4318 -5.9205 -7.1957 21 8 4.2727 -7.0890 -6.8889 22 6 3.8618 -1.2140 1.6084 23 6 3.4059 -2.2350 2.4211 24 6 3.7379 -2.2510 3.7630 25 6 4.5181 -1.2409 4.2940 26 6 4.9697 -0.2170 3.4823 27 6 4.6413 -0.2035 2.1396 28 1 -0.4850 0.8400 0.0004 29 1 5.1534 -2.4938 -0.3493 30 1 3.5998 -3.3339 -0.1285 31 1 4.7174 -4.1261 -2.4492 32 1 2.9343 -3.2383 -4.4517 33 1 4.4885 -2.3991 -4.6720 34 1 5.6565 -4.5842 -4.7604 35 1 4.1027 -5.4240 -4.5401 36 1 3.2552 -4.4071 -6.6365 37 1 4.8088 -3.5671 -6.8573 38 1 4.1973 -4.9292 -9.1588 39 1 4.9415 -6.3942 -9.5084 40 1 2.7930 -3.0219 2.0072 41 1 3.3854 -3.0509 4.3970 42 1 4.7752 -1.2518 5.3429 43 1 5.5796 0.5719 3.8971 44 1 4.9943 0.5963 1.5055 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354931095.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:56 Heat of formation + Delta-G solvation = -129.008770 kcal Electronic energy + Delta-G solvation = -26573.363649 eV Core-core repulsion = 22615.893832 eV Total energy + Delta-G solvation = -3957.469817 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.77057 -39.81838 -38.04392 -37.04412 -36.91389 -35.78198 -34.00139 -33.92075 -33.59136 -31.60769 -30.54504 -28.49930 -26.93799 -24.29743 -23.31599 -22.98856 -21.74282 -20.76728 -20.30281 -19.02978 -18.57872 -18.25791 -17.92429 -17.28931 -17.21397 -16.92795 -16.54993 -16.35513 -16.02817 -15.82190 -15.43855 -15.35974 -14.79811 -14.47064 -14.18911 -14.01700 -13.91018 -13.70400 -13.50934 -13.29216 -13.17450 -13.14376 -13.02993 -13.02626 -12.83918 -12.75347 -12.10903 -12.09038 -11.89419 -11.79698 -11.65179 -11.48109 -11.24444 -11.03649 -10.71194 -10.54296 -9.95478 -9.62504 -9.30698 -8.22988 -6.18224 -0.72452 0.67806 0.73176 1.29550 1.33236 1.41332 1.92912 1.97844 2.34958 2.39085 2.74641 3.07309 3.22074 3.43572 3.57482 3.84316 3.87918 4.12538 4.14629 4.30952 4.31701 4.35445 4.44775 4.50361 4.50621 4.64937 4.71617 4.84928 4.87143 4.92086 4.98122 5.12307 5.22795 5.31115 5.39021 5.40486 5.60068 5.69976 5.76464 5.81855 6.02635 6.33529 6.35553 6.38685 6.75030 6.80415 7.43931 7.54892 8.94298 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015986 B = 0.002302 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.065037 B =12161.684268 C =13130.204963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.022 3.978 3 Si 0.919 3.081 4 H -0.262 1.262 5 H -0.255 1.255 6 H -0.298 1.298 7 C -0.460 4.460 8 H 0.035 0.965 9 C 0.049 3.951 10 H 0.034 0.966 11 C -0.114 4.114 12 C 0.509 3.491 13 O -0.561 6.561 14 N -0.731 5.731 15 C 0.125 3.875 16 C -0.127 4.127 17 C -0.606 4.606 18 S 2.637 3.363 19 N -1.241 6.241 20 O -1.004 7.004 21 O -1.007 7.007 22 C -0.064 4.064 23 C -0.118 4.118 24 C -0.124 4.124 25 C -0.141 4.141 26 C -0.125 4.125 27 C -0.157 4.157 28 H 0.259 0.741 29 H 0.107 0.893 30 H 0.097 0.903 31 H 0.414 0.586 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.161 0.839 37 H 0.166 0.834 38 H 0.427 0.573 39 H 0.424 0.576 40 H 0.112 0.888 41 H 0.140 0.860 42 H 0.147 0.853 43 H 0.139 0.861 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.918 -10.133 -10.193 20.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.175 4.175 3 Si 0.746 3.254 4 H -0.187 1.187 5 H -0.180 1.180 6 H -0.225 1.225 7 C -0.498 4.498 8 H 0.054 0.946 9 C 0.030 3.970 10 H 0.052 0.948 11 C -0.153 4.153 12 C 0.297 3.703 13 O -0.438 6.438 14 N -0.387 5.387 15 C 0.000 4.000 16 C -0.166 4.166 17 C -0.738 4.738 18 S 2.731 3.269 19 N -0.919 5.919 20 O -0.993 6.993 21 O -0.996 6.996 22 C -0.064 4.064 23 C -0.136 4.136 24 C -0.142 4.142 25 C -0.158 4.158 26 C -0.142 4.142 27 C -0.175 4.175 28 H 0.068 0.932 29 H 0.125 0.875 30 H 0.116 0.884 31 H 0.251 0.749 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.179 0.821 37 H 0.184 0.816 38 H 0.257 0.743 39 H 0.255 0.745 40 H 0.130 0.870 41 H 0.158 0.842 42 H 0.164 0.836 43 H 0.157 0.843 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 13.868 -10.139 -9.987 19.871 hybrid contribution -0.729 1.357 -0.597 1.652 sum 13.139 -8.782 -10.584 19.021 Atomic orbital electron populations 1.70027 1.07885 1.27183 1.54353 1.25583 0.95064 1.02050 0.94759 0.86131 0.79617 0.80612 0.79062 1.18699 1.17982 1.22519 1.20831 0.90461 0.92598 1.45911 0.94636 1.18106 0.94704 0.95415 0.88786 0.94760 1.21580 1.02662 1.00697 0.90404 1.21027 0.77395 0.81967 0.89959 1.90720 1.40957 1.34747 1.77367 1.45920 1.61026 1.24174 1.07550 1.21239 1.00574 0.98132 0.80033 1.21527 1.04090 0.99391 0.91597 1.30216 1.16068 1.21334 1.06137 1.03759 0.73571 0.75640 0.73923 1.52785 1.76895 1.35277 1.26941 1.93576 1.32200 1.87298 1.86255 1.93580 1.74051 1.48561 1.83398 1.20523 0.93943 0.94364 0.97602 1.21023 0.99334 0.99001 0.94267 1.21415 0.98409 0.99646 0.94737 1.21341 0.99244 0.94683 1.00575 1.21334 1.00498 0.99361 0.93048 1.21197 1.00721 0.98945 0.96680 0.93242 0.87526 0.88448 0.74882 0.92626 0.91584 0.88062 0.88680 0.82079 0.81641 0.74304 0.74463 0.86965 0.84203 0.83574 0.84297 0.87602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.94 13.96 21.45 0.30 -61.64 16 2 C 0.02 1.31 5.47 84.66 0.46 1.77 16 3 Si 0.92 47.91 26.62 68.60 1.83 49.73 16 4 H -0.26 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.26 -12.87 6.29 99.48 0.63 -12.25 16 6 H -0.30 -15.64 7.11 99.48 0.71 -14.93 16 7 C -0.46 -26.01 6.97 25.60 0.18 -25.84 16 8 H 0.04 2.20 8.06 -2.91 -0.02 2.18 16 9 C 0.05 2.23 1.21 -12.29 -0.01 2.22 16 10 H 0.03 1.69 4.88 -2.39 -0.01 1.68 16 11 C -0.11 -4.02 4.93 29.85 0.15 -3.87 16 12 C 0.51 19.06 7.58 87.66 0.66 19.72 16 13 O -0.56 -27.45 14.98 -3.03 -0.05 -27.50 16 14 N -0.73 -18.80 5.56 -463.06 -2.57 -21.37 16 15 C 0.13 2.75 5.67 86.38 0.49 3.24 16 16 C -0.13 -1.71 5.34 30.59 0.16 -1.55 16 17 C -0.61 -4.86 6.09 71.98 0.44 -4.42 16 18 S 2.64 32.67 5.97 -56.49 -0.34 32.34 16 19 N -1.24 -7.17 9.43 37.02 0.35 -6.82 16 20 O -1.00 -20.59 18.10 -127.65 -2.31 -22.90 16 21 O -1.01 -21.49 18.10 -127.65 -2.31 -23.80 16 22 C -0.06 -2.61 4.52 -19.87 -0.09 -2.70 16 23 C -0.12 -4.42 8.86 22.27 0.20 -4.22 16 24 C -0.12 -3.82 10.05 22.27 0.22 -3.59 16 25 C -0.14 -3.96 10.05 22.27 0.22 -3.74 16 26 C -0.12 -3.84 10.05 22.27 0.22 -3.62 16 27 C -0.16 -5.89 9.08 22.27 0.20 -5.69 16 28 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 29 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 30 H 0.10 3.20 7.69 -2.39 -0.02 3.18 16 31 H 0.41 7.42 8.47 -92.71 -0.79 6.64 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.16 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.17 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.43 -0.17 8.83 -96.75 -0.85 -1.02 16 39 H 0.42 2.03 8.96 -96.75 -0.87 1.17 16 40 H 0.11 4.24 7.72 -2.91 -0.02 4.22 16 41 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 42 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 43 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 44 H 0.11 3.92 7.91 -2.91 -0.02 3.89 16 Total: -1.00 -94.21 381.08 -3.14 -97.35 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -1.54 Total: 16.89 kcal Atomic # 6 Polarization: -35.80 SS G_CDS: 3.51 Total: -32.29 kcal Atomic # 7 Polarization: -87.91 SS G_CDS: -1.92 Total: -89.83 kcal Atomic # 8 Polarization: -69.53 SS G_CDS: -4.67 Total: -74.20 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 1.83 Total: 49.73 kcal Atomic # 16 Polarization: 32.67 SS G_CDS: -0.34 Total: 32.34 kcal Total: -94.21 -3.14 -97.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354931095.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.658 kcal (2) G-P(sol) polarization free energy of solvation -94.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds