Wall clock time and date at job start Tue Mar 31 2020 23:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00410 * 2 1 4 4 H 1.48499 * 109.47043 * 269.99974 * 3 2 1 5 5 H 1.48503 * 109.46738 * 29.99869 * 3 2 1 6 6 H 1.48498 * 109.47345 * 149.99716 * 3 2 1 7 7 C 1.37877 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99963 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00553 * 179.97438 * 7 2 1 10 10 N 1.46501 * 109.47355 * 180.02562 * 9 7 2 11 11 C 1.46504 * 119.99714 * 95.90242 * 10 9 7 12 12 C 1.50702 * 109.46962 * 90.00063 * 11 10 9 13 13 C 1.38676 * 120.41371 * 269.71420 * 12 11 10 14 14 C 1.38625 * 118.41647 * 179.78825 * 13 12 11 15 15 C 1.38225 * 119.16381 * 0.51275 * 14 13 12 16 16 N 1.31855 * 120.76111 * 359.72957 * 15 14 13 17 17 C 1.31887 * 121.72671 * 359.97438 * 16 15 14 18 18 C 1.34772 * 120.00165 * 275.62324 * 10 9 7 19 19 O 1.21491 * 120.00162 * 185.31157 * 18 10 9 20 20 C 1.48340 * 119.99709 * 5.30953 * 18 10 9 21 21 C 1.39310 * 119.56914 * 186.03253 * 20 18 10 22 22 C 1.38454 * 119.18721 * 179.79274 * 21 20 18 23 23 C 1.39868 * 118.35622 * 0.48072 * 22 21 20 24 24 C 1.48007 * 120.45770 * 179.76847 * 23 22 21 25 25 N 1.34775 * 119.99646 * 179.97438 * 24 23 22 26 26 O 1.21533 * 120.00233 * 359.97327 * 24 23 22 27 27 C 1.39719 * 119.07695 * 359.74353 * 23 22 21 28 28 N 1.31418 * 120.72204 * 0.02562 * 27 23 22 29 29 H 0.96998 * 119.99777 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47053 * 60.00416 * 9 7 2 31 31 H 1.08994 * 109.47234 * 300.00694 * 9 7 2 32 32 H 1.09002 * 109.46339 * 209.99766 * 11 10 9 33 33 H 1.08999 * 109.47181 * 329.99912 * 11 10 9 34 34 H 1.08000 * 120.79070 * 0.03147 * 13 12 11 35 35 H 1.08006 * 120.42185 * 180.22550 * 14 13 12 36 36 H 1.07999 * 119.62220 * 179.75224 * 15 14 13 37 37 H 1.08000 * 119.61569 * 180.02562 * 17 16 15 38 38 H 1.07996 * 120.40081 * 0.02562 * 21 20 18 39 39 H 1.07998 * 120.81729 * 180.22328 * 22 21 20 40 40 H 0.96996 * 120.00000 * 0.02562 * 25 24 23 41 41 H 0.97004 * 119.99518 * 179.97438 * 25 24 23 42 42 H 1.08002 * 119.64200 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1295 0.0005 9 6 3.5115 -1.1942 0.0000 10 7 3.9998 -2.5754 0.0001 11 6 4.3664 -3.2228 -1.2620 12 6 5.8247 -2.9737 -1.5492 13 6 6.2161 -1.8640 -2.2829 14 6 7.5687 -1.6727 -2.5189 15 6 8.4749 -2.5937 -2.0278 16 7 8.0661 -3.6405 -1.3381 17 6 6.7881 -3.8511 -1.0895 18 6 4.1170 -3.2487 1.1617 19 8 4.6118 -4.3582 1.1735 20 6 3.6419 -2.6349 2.4258 21 6 3.8805 -3.2817 3.6363 22 6 3.4374 -2.6996 4.8118 23 6 2.7543 -1.4816 4.7336 24 6 2.2557 -0.8209 5.9605 25 7 1.5990 0.3529 5.8744 26 8 2.4384 -1.3368 7.0457 27 6 2.5496 -0.8971 3.4811 28 7 2.9901 -1.4794 2.3884 29 1 -0.4850 0.8400 -0.0004 30 1 3.8752 -0.6799 0.8895 31 1 3.8746 -0.6809 -0.8904 32 1 4.1893 -4.2956 -1.1848 33 1 3.7615 -2.8119 -2.0703 34 1 5.4849 -1.1633 -2.6581 35 1 7.9098 -0.8174 -3.0834 36 1 9.5301 -2.4541 -2.2108 37 1 6.4911 -4.7197 -0.5206 38 1 4.4081 -4.2238 3.6578 39 1 3.6113 -3.1764 5.7651 40 1 1.4529 0.7644 5.0083 41 1 1.2719 0.7857 6.6785 42 1 2.0236 0.0435 3.4101 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355817636.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:56 Heat of formation + Delta-G solvation = 28.087669 kcal Electronic energy + Delta-G solvation = -29237.123215 eV Core-core repulsion = 25183.314411 eV Total energy + Delta-G solvation = -4053.808804 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.68208 -40.08894 -39.25366 -38.10642 -35.59215 -33.92025 -33.17078 -32.33914 -32.09017 -31.52765 -30.90323 -28.14432 -26.70041 -24.74515 -23.48114 -23.37994 -22.53406 -22.14011 -20.93581 -19.40896 -18.10890 -17.32185 -17.16665 -16.86307 -16.71243 -16.21752 -15.94582 -15.39306 -15.14502 -14.90490 -14.88896 -14.46503 -14.45129 -13.92725 -13.69346 -13.40863 -13.28623 -13.11874 -12.91965 -12.70560 -12.63361 -12.32585 -12.00678 -11.63429 -11.50913 -11.01198 -10.73990 -10.35859 -10.31088 -9.91285 -9.80982 -9.70802 -9.67100 -9.58620 -9.34931 -9.02876 -8.96403 -8.68017 -8.54135 -7.94169 -6.16482 -4.08516 0.50448 1.18583 1.39500 1.46082 2.65215 3.12282 3.22476 3.25293 3.32218 3.40609 3.50475 4.01409 4.19375 4.28537 4.44230 4.56881 4.85667 4.87470 4.93411 4.98480 5.03380 5.10654 5.14590 5.18197 5.19039 5.38954 5.50967 5.75981 5.82964 5.93425 6.01048 6.08847 6.12925 6.19607 6.34741 6.44276 6.60936 6.67640 6.82705 6.89541 7.21407 7.22057 7.51129 7.90254 8.07370 8.08396 8.16168 8.39417 8.63950 8.86812 9.43851 10.96681 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010203 B = 0.004402 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2743.550513 B = 6358.908627 C = 8057.038821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.077 3.923 3 Si 0.861 3.139 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.486 4.486 8 H 0.072 0.928 9 C 0.210 3.790 10 N -0.565 5.565 11 C 0.159 3.841 12 C -0.148 4.148 13 C -0.061 4.061 14 C -0.180 4.180 15 C 0.091 3.909 16 N -0.491 5.491 17 C 0.120 3.880 18 C 0.569 3.431 19 O -0.555 6.555 20 C 0.105 3.895 21 C -0.127 4.127 22 C -0.035 4.035 23 C -0.184 4.184 24 C 0.573 3.427 25 N -0.848 5.848 26 O -0.545 6.545 27 C 0.128 3.872 28 N -0.383 5.383 29 H 0.262 0.738 30 H 0.061 0.939 31 H 0.018 0.982 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.136 0.864 35 H 0.131 0.869 36 H 0.150 0.850 37 H 0.161 0.839 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.405 0.595 41 H 0.405 0.595 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.488 1.016 1.587 8.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.125 4.125 3 Si 0.688 3.312 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.525 4.525 8 H 0.090 0.910 9 C 0.089 3.911 10 N -0.293 5.293 11 C 0.035 3.965 12 C -0.152 4.152 13 C -0.088 4.088 14 C -0.199 4.199 15 C -0.066 4.066 16 N -0.199 5.199 17 C -0.037 4.037 18 C 0.356 3.644 19 O -0.435 6.435 20 C -0.033 4.033 21 C -0.147 4.147 22 C -0.061 4.061 23 C -0.189 4.189 24 C 0.359 3.641 25 N -0.412 5.412 26 O -0.423 6.423 27 C -0.033 4.033 28 N -0.093 5.093 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.036 0.964 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.154 0.846 35 H 0.149 0.851 36 H 0.168 0.832 37 H 0.179 0.821 38 H 0.167 0.833 39 H 0.165 0.835 40 H 0.235 0.765 41 H 0.236 0.764 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 9.263 -0.105 1.657 9.411 hybrid contribution -0.637 1.906 0.298 2.032 sum 8.626 1.802 1.955 9.026 Atomic orbital electron populations 1.69899 1.06045 1.26652 1.51223 1.24683 0.94412 0.98226 0.95133 0.87102 0.80728 0.84524 0.78838 1.20395 1.21158 1.18773 1.21081 0.88507 0.94498 1.48452 0.90962 1.20256 0.96365 0.76841 0.97621 1.47908 1.60850 1.16255 1.04298 1.20271 0.89419 0.99607 0.87180 1.21410 0.98342 0.96366 0.99038 1.21623 0.96212 0.95925 0.95021 1.22102 0.94077 1.01150 1.02610 1.22727 0.99996 0.90173 0.93748 1.67733 1.18277 1.20642 1.13292 1.22900 0.87401 0.98513 0.94918 1.17891 0.78650 0.84622 0.83243 1.90680 1.46392 1.19925 1.86462 1.21441 0.95620 0.92527 0.93746 1.22072 0.99919 1.01269 0.91484 1.21560 0.92762 0.92718 0.99107 1.21105 1.04582 0.98493 0.94733 1.18148 0.77017 0.80602 0.88378 1.43759 1.60030 1.24008 1.13432 1.90788 1.57827 1.64638 1.29015 1.23121 0.94816 0.98909 0.86407 1.68786 1.04582 1.07576 1.28318 0.92748 0.92170 0.96384 0.89196 0.88634 0.84625 0.85057 0.83225 0.82149 0.83281 0.83483 0.76477 0.76416 0.82636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.39 13.96 55.43 0.77 -23.62 16 2 C 0.08 1.91 5.47 -17.82 -0.10 1.82 16 3 Si 0.86 18.47 27.47 -169.99 -4.67 13.80 16 4 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.29 -6.10 7.11 56.52 0.40 -5.69 16 6 H -0.26 -5.38 6.54 56.52 0.37 -5.01 16 7 C -0.49 -11.77 7.91 -34.44 -0.27 -12.04 16 8 H 0.07 2.01 8.06 -52.48 -0.42 1.59 16 9 C 0.21 4.34 3.82 -5.19 -0.02 4.32 16 10 N -0.57 -10.75 2.45 -177.36 -0.44 -11.18 16 11 C 0.16 2.56 5.49 -5.19 -0.03 2.54 16 12 C -0.15 -2.23 5.48 -104.48 -0.57 -2.81 16 13 C -0.06 -0.83 9.86 -39.28 -0.39 -1.22 16 14 C -0.18 -2.14 10.11 -39.44 -0.40 -2.53 16 15 C 0.09 1.14 11.18 -17.55 -0.20 0.95 16 16 N -0.49 -7.50 10.36 -13.25 -0.14 -7.63 16 17 C 0.12 1.86 10.73 -17.55 -0.19 1.68 16 18 C 0.57 11.07 7.60 -12.11 -0.09 10.98 16 19 O -0.56 -10.98 15.16 5.37 0.08 -10.89 16 20 C 0.10 1.95 6.56 -82.93 -0.54 1.40 16 21 C -0.13 -1.99 9.62 -39.10 -0.38 -2.37 16 22 C -0.04 -0.51 9.71 -38.89 -0.38 -0.89 16 23 C -0.18 -2.75 5.90 -104.73 -0.62 -3.36 16 24 C 0.57 8.12 8.06 -12.26 -0.10 8.02 16 25 N -0.85 -8.77 8.83 30.57 0.27 -8.50 16 26 O -0.54 -9.25 17.25 5.34 0.09 -9.16 16 27 C 0.13 2.09 10.71 -17.18 -0.18 1.90 16 28 N -0.38 -7.32 4.72 -9.48 -0.04 -7.37 16 29 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 30 H 0.06 1.29 4.84 -51.93 -0.25 1.04 16 31 H 0.02 0.37 7.46 -51.93 -0.39 -0.02 16 32 H 0.09 1.42 7.46 -51.93 -0.39 1.03 16 33 H 0.10 1.47 8.02 -51.93 -0.42 1.05 16 34 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 36 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.16 2.53 7.38 -52.49 -0.39 2.14 16 38 H 0.15 2.13 7.64 -52.49 -0.40 1.73 16 39 H 0.15 1.90 7.73 -52.49 -0.41 1.49 16 40 H 0.41 3.62 6.89 -40.82 -0.28 3.34 16 41 H 0.40 3.36 8.93 -40.82 -0.36 3.00 16 42 H 0.16 2.23 6.41 -52.49 -0.34 1.89 16 LS Contribution 362.46 15.07 5.46 5.46 Total: -1.00 -31.81 362.46 -7.54 -39.35 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -4.48 Total: 11.37 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: -4.45 Total: 8.38 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: 0.43 Total: -58.31 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: 0.17 Total: -20.05 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -4.67 Total: 13.80 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.81 -7.54 -39.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355817636.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.435 kcal (2) G-P(sol) polarization free energy of solvation -31.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds