Wall clock time and date at job start Wed Apr 1 2020 00:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37984 * 120.07893 * 2 1 4 4 C 1.38337 * 120.14658 * 180.25831 * 3 2 1 5 5 C 1.38377 * 120.29158 * 359.78743 * 4 3 2 6 6 S 1.76203 * 119.92795 * 179.97438 * 5 4 3 7 7 O 1.42097 * 106.39868 * 23.56626 * 6 5 4 8 8 O 1.42100 * 106.40426 * 156.48335 * 6 5 4 9 9 N 1.65599 * 107.21946 * 270.02659 * 6 5 4 10 10 C 1.46505 * 119.99690 * 65.00054 * 9 6 5 11 11 C 1.52999 * 109.46667 * 164.99986 * 10 9 6 12 12 C 1.53003 * 109.47313 * 299.99735 * 11 10 9 13 13 C 1.52999 * 109.47418 * 59.99917 * 11 10 9 14 14 C 1.50705 * 109.47154 * 179.97438 * 11 10 9 15 15 H 1.08001 * 119.99809 * 355.09553 * 14 11 10 16 16 C 1.37871 * 120.00238 * 175.09211 * 14 11 10 17 17 N 1.31516 * 120.00353 * 198.49255 * 16 14 11 18 18 Si 1.86800 * 120.00192 * 18.49414 * 16 14 11 19 19 H 1.48502 * 109.46911 * 84.56320 * 18 16 14 20 20 H 1.48500 * 109.47345 * 204.56572 * 18 16 14 21 21 H 1.48497 * 109.47040 * 324.56874 * 18 16 14 22 22 C 1.37939 * 120.14757 * 359.97438 * 5 4 3 23 23 C 1.39560 * 120.07421 * 179.79789 * 2 1 3 24 24 C 1.47845 * 120.14119 * 359.97438 * 23 2 1 25 25 N 1.34771 * 120.00317 * 173.59814 * 24 23 2 26 26 O 1.21563 * 120.00041 * 353.60736 * 24 23 2 27 27 H 1.08997 * 109.46902 * 262.62740 * 1 2 3 28 28 H 1.09004 * 109.46691 * 22.62212 * 1 2 3 29 29 H 1.08997 * 109.47334 * 142.62534 * 1 2 3 30 30 H 1.07998 * 119.92463 * 0.02562 * 3 2 1 31 31 H 1.07997 * 119.85258 * 179.76707 * 4 3 2 32 32 H 0.96994 * 120.00103 * 244.99739 * 9 6 5 33 33 H 1.08999 * 109.46774 * 284.99235 * 10 9 6 34 34 H 1.08995 * 109.47264 * 44.99694 * 10 9 6 35 35 H 1.08994 * 109.47251 * 70.20472 * 12 11 10 36 36 H 1.08997 * 109.47211 * 190.21035 * 12 11 10 37 37 H 1.09002 * 109.46492 * 310.20350 * 12 11 10 38 38 H 1.08991 * 109.47381 * 59.99846 * 13 11 10 39 39 H 1.09000 * 109.47184 * 180.02562 * 13 11 10 40 40 H 1.09005 * 109.47171 * 299.99570 * 13 11 10 41 41 H 0.96997 * 120.00588 * 179.97438 * 17 16 14 42 42 H 1.08002 * 120.07417 * 180.02562 * 22 5 4 43 43 H 0.97008 * 119.99736 * 0.02562 * 25 24 23 44 44 H 0.97001 * 120.00430 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1986 1.1940 0.0000 4 6 3.5819 1.1957 -0.0054 5 6 4.2813 0.0017 -0.0064 6 16 6.0433 0.0149 -0.0140 7 8 6.4373 1.2683 0.5273 8 8 6.4563 -1.2310 0.5303 9 7 6.5267 0.0167 -1.5978 10 6 6.2190 1.1633 -2.4563 11 6 7.0730 1.0949 -3.7239 12 6 8.5545 1.1259 -3.3431 13 6 6.7667 -0.2019 -4.4758 14 6 6.7561 2.2740 -4.6073 15 1 5.9644 2.9560 -4.3343 16 6 7.4769 2.4823 -5.7640 17 7 7.4693 3.6647 -6.3398 18 14 8.4643 1.0849 -6.5136 19 1 7.5788 0.2581 -7.3723 20 1 9.5686 1.6437 -7.3343 21 1 9.0305 0.2420 -5.4300 22 6 3.6022 -1.1990 -0.0015 23 6 2.2064 -1.2077 0.0043 24 6 1.4720 -2.4909 0.0094 25 7 2.1438 -3.6524 -0.1167 26 8 0.2621 -2.4982 0.1271 27 1 -0.3633 -0.1319 1.0192 28 1 -0.3633 0.9487 -0.3953 29 1 -0.3634 -0.8166 -0.6238 30 1 1.6586 2.1293 0.0004 31 1 4.1184 2.1330 -0.0092 32 1 7.0136 -0.7413 -1.9571 33 1 5.1636 1.1411 -2.7276 34 1 6.4372 2.0872 -1.9206 35 1 8.8253 0.1871 -2.8602 36 1 9.1577 1.2599 -4.2410 37 1 8.7360 1.9531 -2.6568 38 1 5.7114 -0.2240 -4.7472 39 1 7.3755 -0.2508 -5.3787 40 1 6.9957 -1.0550 -3.8371 41 1 7.9767 3.8113 -7.1533 42 1 4.1493 -2.1302 -0.0018 43 1 3.1093 -3.6465 -0.2104 44 1 1.6619 -4.4942 -0.1137 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416526650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:06 Heat of formation + Delta-G solvation = -74.805418 kcal Electronic energy + Delta-G solvation = -28099.121302 eV Core-core repulsion = 24144.001919 eV Total energy + Delta-G solvation = -3955.119383 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.63829 -38.50584 -37.44492 -37.06837 -35.78825 -34.45934 -33.31225 -32.99620 -31.35181 -31.33373 -27.65020 -26.36714 -25.76789 -24.67560 -24.39660 -22.37986 -21.31068 -19.53117 -19.32162 -18.54214 -17.43739 -17.28204 -16.65092 -16.12493 -15.89554 -15.81146 -15.32476 -15.24879 -15.09543 -14.58120 -14.23438 -13.89861 -13.86332 -13.60194 -12.97810 -12.83180 -12.54634 -12.44988 -12.43912 -12.34382 -12.16642 -12.06894 -12.02916 -11.91473 -11.81461 -11.64854 -10.98658 -10.50566 -10.30033 -10.19927 -10.12710 -10.06048 -9.99690 -9.40481 -9.39505 -9.22740 -9.12180 -8.71833 -8.43325 -6.20923 -4.15641 0.31114 0.50608 0.69532 2.42007 3.09921 3.12398 3.21996 3.30346 3.36335 3.37464 3.80011 4.18475 4.33173 4.34344 4.49032 4.55291 4.84231 5.01465 5.10292 5.18399 5.31576 5.48022 5.49193 5.52124 5.62225 5.75429 5.89407 5.95140 5.99701 6.02768 6.13708 6.34465 6.42599 6.43945 6.44693 6.54819 6.62049 6.67047 6.87945 6.94159 7.15856 7.26552 7.40952 7.70412 7.87966 8.38298 8.84542 9.45319 10.91815 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014043 B = 0.003423 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.375104 B = 8177.204718 C = 8555.997549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.029 3.971 3 C -0.149 4.149 4 C 0.015 3.985 5 C -0.688 4.688 6 S 2.694 3.306 7 O -0.953 6.953 8 O -0.970 6.970 9 N -1.110 6.110 10 C 0.136 3.864 11 C 0.037 3.963 12 C -0.145 4.145 13 C -0.147 4.147 14 C -0.519 4.519 15 H 0.076 0.924 16 C 0.080 3.920 17 N -0.886 5.886 18 Si 0.872 3.128 19 H -0.285 1.285 20 H -0.303 1.303 21 H -0.243 1.243 22 C 0.019 3.981 23 C -0.171 4.171 24 C 0.568 3.432 25 N -0.851 5.851 26 O -0.535 6.535 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.098 0.902 30 H 0.142 0.858 31 H 0.150 0.850 32 H 0.416 0.584 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.025 0.975 36 H 0.056 0.944 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.042 0.958 40 H 0.029 0.971 41 H 0.265 0.735 42 H 0.141 0.859 43 H 0.403 0.597 44 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.062 -11.191 12.373 18.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.028 3.972 3 C -0.168 4.168 4 C -0.004 4.004 5 C -0.774 4.774 6 S 2.782 3.218 7 O -0.943 6.943 8 O -0.960 6.960 9 N -0.873 5.873 10 C 0.011 3.989 11 C 0.034 3.966 12 C -0.202 4.202 13 C -0.204 4.204 14 C -0.557 4.557 15 H 0.094 0.906 16 C -0.124 4.124 17 N -0.522 5.522 18 Si 0.703 3.297 19 H -0.213 1.213 20 H -0.231 1.231 21 H -0.169 1.169 22 C -0.001 4.001 23 C -0.175 4.175 24 C 0.354 3.646 25 N -0.415 5.415 26 O -0.414 6.414 27 H 0.101 0.899 28 H 0.084 0.916 29 H 0.116 0.884 30 H 0.159 0.841 31 H 0.167 0.833 32 H 0.253 0.747 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.044 0.956 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.048 0.952 41 H 0.075 0.925 42 H 0.159 0.841 43 H 0.233 0.767 44 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -9.358 -10.712 13.117 19.349 hybrid contribution 0.384 -1.359 -1.218 1.865 sum -8.975 -12.071 11.898 19.179 Atomic orbital electron populations 1.21206 0.89431 1.03661 1.04087 1.20366 0.97176 0.91579 0.88086 1.21255 0.94164 0.98044 1.03316 1.21239 0.94701 0.97104 0.87367 1.31094 1.28169 0.98990 1.19103 1.01878 0.73376 0.73640 0.72939 1.93596 1.80202 1.43674 1.76845 1.93556 1.81021 1.44312 1.77089 1.55514 1.71248 1.29986 1.30549 1.21521 0.99349 0.85782 0.92217 1.18603 0.91845 0.94700 0.91408 1.22332 0.98164 0.98832 1.00867 1.22327 1.01084 0.97520 0.99475 1.20685 1.20022 1.08775 1.06216 0.90595 1.24929 0.95386 0.94928 0.97115 1.69992 1.41390 1.20750 1.20034 0.87550 0.79728 0.83287 0.79086 1.21290 1.23089 1.16861 1.20966 0.93171 0.97014 0.88917 1.19782 0.93444 0.93559 1.10712 1.18143 0.86864 0.84069 0.75487 1.43788 1.12170 1.08533 1.77017 1.90779 1.13631 1.87261 1.49689 0.89935 0.91603 0.88371 0.84051 0.83261 0.74730 0.92319 0.90433 0.95580 0.92565 0.93184 0.92942 0.93919 0.95188 0.92542 0.84127 0.76728 0.76228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 8.69 36.01 0.31 -0.94 16 2 C 0.03 0.32 5.91 -104.22 -0.62 -0.29 16 3 C -0.15 -1.56 9.66 -39.64 -0.38 -1.94 16 4 C 0.02 0.18 9.52 -39.49 -0.38 -0.20 16 5 C -0.69 -8.35 5.94 -39.64 -0.24 -8.58 16 6 S 2.69 36.90 5.74 -107.50 -0.62 36.29 16 7 O -0.95 -15.75 16.74 -57.17 -0.96 -16.71 16 8 O -0.97 -14.33 17.27 -57.17 -0.99 -15.32 16 9 N -1.11 -15.68 5.44 -10.61 -0.06 -15.73 16 10 C 0.14 2.32 5.03 -4.04 -0.02 2.30 16 11 C 0.04 0.75 0.51 -155.66 -0.08 0.67 16 12 C -0.14 -2.90 7.45 37.16 0.28 -2.62 16 13 C -0.15 -2.76 7.66 37.16 0.28 -2.48 16 14 C -0.52 -13.14 8.61 -34.44 -0.30 -13.44 16 15 H 0.08 2.07 7.99 -52.49 -0.42 1.65 16 16 C 0.08 2.14 5.25 -17.82 -0.09 2.04 16 17 N -0.89 -25.58 13.96 55.43 0.77 -24.81 16 18 Si 0.87 20.22 22.88 -169.99 -3.89 16.33 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.24 -5.13 4.61 56.52 0.26 -4.87 16 22 C 0.02 0.21 9.00 -39.19 -0.35 -0.14 16 23 C -0.17 -1.92 5.87 -104.97 -0.62 -2.54 16 24 C 0.57 6.18 7.97 -12.33 -0.10 6.08 16 25 N -0.85 -6.13 8.82 30.53 0.27 -5.86 16 26 O -0.54 -7.13 14.21 5.31 0.08 -7.06 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.52 8.03 -51.93 -0.42 0.10 16 29 H 0.10 1.10 5.94 -51.93 -0.31 0.79 16 30 H 0.14 1.12 8.05 -52.49 -0.42 0.70 16 31 H 0.15 1.59 7.61 -52.49 -0.40 1.19 16 32 H 0.42 5.35 6.54 -34.47 -0.23 5.12 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.08 1.36 7.75 -51.93 -0.40 0.96 16 35 H 0.03 0.44 7.49 -51.93 -0.39 0.05 16 36 H 0.06 1.20 3.88 -51.93 -0.20 1.00 16 37 H 0.05 0.99 8.11 -51.93 -0.42 0.57 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.04 0.86 2.75 -51.93 -0.14 0.72 16 40 H 0.03 0.46 6.60 -51.93 -0.34 0.12 16 41 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 42 H 0.14 1.18 6.01 -52.49 -0.32 0.87 16 43 H 0.40 2.13 6.90 -40.82 -0.28 1.85 16 44 H 0.41 2.24 8.93 -40.82 -0.36 1.88 16 LS Contribution 356.28 15.07 5.37 5.37 Total: -1.00 -33.70 356.28 -7.91 -41.61 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -5.60 Total: 7.97 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: -2.29 Total: -22.08 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: 0.99 Total: -46.41 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -1.87 Total: -39.08 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -3.89 Total: 16.33 kcal Atomic # 16 Polarization: 36.90 SS G_CDS: -0.62 Total: 36.29 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.70 -7.91 -41.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416526650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.193 kcal (2) G-P(sol) polarization free energy of solvation -33.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds