Wall clock time and date at job start Wed Apr 1 2020 00:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37984 * 120.07893 * 2 1 4 4 C 1.38337 * 120.14658 * 180.25831 * 3 2 1 5 5 C 1.38377 * 120.29158 * 359.78743 * 4 3 2 6 6 S 1.76203 * 119.92795 * 179.97438 * 5 4 3 7 7 O 1.42097 * 106.39868 * 23.56626 * 6 5 4 8 8 O 1.42100 * 106.40426 * 156.48335 * 6 5 4 9 9 N 1.65599 * 107.21946 * 270.02659 * 6 5 4 10 10 C 1.46505 * 119.99690 * 65.00054 * 9 6 5 11 11 C 1.52999 * 109.46667 * 164.99986 * 10 9 6 12 12 C 1.53003 * 109.47313 * 299.99735 * 11 10 9 13 13 C 1.52999 * 109.47418 * 59.99917 * 11 10 9 14 14 C 1.50705 * 109.47154 * 179.97438 * 11 10 9 15 15 H 1.08001 * 119.99809 * 355.09553 * 14 11 10 16 16 C 1.37871 * 120.00238 * 175.09211 * 14 11 10 17 17 N 1.31516 * 120.00353 * 198.49255 * 16 14 11 18 18 Si 1.86800 * 120.00192 * 18.49414 * 16 14 11 19 19 H 1.48502 * 109.46911 * 84.56320 * 18 16 14 20 20 H 1.48500 * 109.47345 * 204.56572 * 18 16 14 21 21 H 1.48497 * 109.47040 * 324.56874 * 18 16 14 22 22 C 1.37939 * 120.14757 * 359.97438 * 5 4 3 23 23 C 1.39560 * 120.07421 * 179.79789 * 2 1 3 24 24 C 1.47845 * 120.14119 * 359.97438 * 23 2 1 25 25 N 1.34771 * 120.00317 * 173.59814 * 24 23 2 26 26 O 1.21563 * 120.00041 * 353.60736 * 24 23 2 27 27 H 1.08997 * 109.46902 * 262.62740 * 1 2 3 28 28 H 1.09004 * 109.46691 * 22.62212 * 1 2 3 29 29 H 1.08997 * 109.47334 * 142.62534 * 1 2 3 30 30 H 1.07998 * 119.92463 * 0.02562 * 3 2 1 31 31 H 1.07997 * 119.85258 * 179.76707 * 4 3 2 32 32 H 0.96994 * 120.00103 * 244.99739 * 9 6 5 33 33 H 1.08999 * 109.46774 * 284.99235 * 10 9 6 34 34 H 1.08995 * 109.47264 * 44.99694 * 10 9 6 35 35 H 1.08994 * 109.47251 * 70.20472 * 12 11 10 36 36 H 1.08997 * 109.47211 * 190.21035 * 12 11 10 37 37 H 1.09002 * 109.46492 * 310.20350 * 12 11 10 38 38 H 1.08991 * 109.47381 * 59.99846 * 13 11 10 39 39 H 1.09000 * 109.47184 * 180.02562 * 13 11 10 40 40 H 1.09005 * 109.47171 * 299.99570 * 13 11 10 41 41 H 0.96997 * 120.00588 * 179.97438 * 17 16 14 42 42 H 1.08002 * 120.07417 * 180.02562 * 22 5 4 43 43 H 0.97008 * 119.99736 * 0.02562 * 25 24 23 44 44 H 0.97001 * 120.00430 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1986 1.1940 0.0000 4 6 3.5819 1.1957 -0.0054 5 6 4.2813 0.0017 -0.0064 6 16 6.0433 0.0149 -0.0140 7 8 6.4373 1.2683 0.5273 8 8 6.4563 -1.2310 0.5303 9 7 6.5267 0.0167 -1.5978 10 6 6.2190 1.1633 -2.4563 11 6 7.0730 1.0949 -3.7239 12 6 8.5545 1.1259 -3.3431 13 6 6.7667 -0.2019 -4.4758 14 6 6.7561 2.2740 -4.6073 15 1 5.9644 2.9560 -4.3343 16 6 7.4769 2.4823 -5.7640 17 7 7.4693 3.6647 -6.3398 18 14 8.4643 1.0849 -6.5136 19 1 7.5788 0.2581 -7.3723 20 1 9.5686 1.6437 -7.3343 21 1 9.0305 0.2420 -5.4300 22 6 3.6022 -1.1990 -0.0015 23 6 2.2064 -1.2077 0.0043 24 6 1.4720 -2.4909 0.0094 25 7 2.1438 -3.6524 -0.1167 26 8 0.2621 -2.4982 0.1271 27 1 -0.3633 -0.1319 1.0192 28 1 -0.3633 0.9487 -0.3953 29 1 -0.3634 -0.8166 -0.6238 30 1 1.6586 2.1293 0.0004 31 1 4.1184 2.1330 -0.0092 32 1 7.0136 -0.7413 -1.9571 33 1 5.1636 1.1411 -2.7276 34 1 6.4372 2.0872 -1.9206 35 1 8.8253 0.1871 -2.8602 36 1 9.1577 1.2599 -4.2410 37 1 8.7360 1.9531 -2.6568 38 1 5.7114 -0.2240 -4.7472 39 1 7.3755 -0.2508 -5.3787 40 1 6.9957 -1.0550 -3.8371 41 1 7.9767 3.8113 -7.1533 42 1 4.1493 -2.1302 -0.0018 43 1 3.1093 -3.6465 -0.2104 44 1 1.6619 -4.4942 -0.1137 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416526650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:05 Heat of formation + Delta-G solvation = -102.521954 kcal Electronic energy + Delta-G solvation = -28100.323182 eV Core-core repulsion = 24144.001919 eV Total energy + Delta-G solvation = -3956.321262 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.45728 -39.34771 -38.90765 -38.28838 -36.96526 -35.20847 -34.90643 -33.85402 -33.10543 -32.13819 -28.46974 -27.89478 -27.29356 -26.49209 -25.23653 -23.21350 -22.14711 -20.96563 -20.55135 -19.50425 -18.64589 -18.05825 -17.89960 -17.55928 -16.98152 -16.92318 -16.65566 -16.27398 -16.07577 -15.60311 -15.35351 -15.21152 -14.73246 -14.68124 -14.49729 -14.41698 -14.11310 -13.67099 -13.40889 -13.32552 -13.27341 -13.23059 -13.17598 -13.12498 -13.05883 -12.87591 -12.33877 -11.99705 -11.96432 -11.84835 -11.65896 -11.03816 -10.93788 -10.76807 -10.50984 -10.45821 -10.26385 -10.23836 -10.17295 -8.26215 -6.22727 -0.68437 -0.44588 -0.16478 1.39647 1.42915 1.52340 1.58045 2.04066 2.39999 2.40810 2.48615 2.75360 3.10488 3.25348 3.57106 3.67189 3.71793 4.02006 4.09360 4.21418 4.32907 4.43250 4.50805 4.54447 4.59678 4.69409 4.76601 4.80258 4.90691 4.93726 4.97327 5.02094 5.08379 5.16834 5.17941 5.33678 5.35059 5.59373 5.62061 5.79576 5.83648 5.87884 6.15228 6.29316 6.38983 6.81697 7.19053 7.41259 8.90140 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014043 B = 0.003423 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.375104 B = 8177.204718 C = 8555.997549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.020 3.980 3 C -0.148 4.148 4 C 0.001 3.999 5 C -0.694 4.694 6 S 2.714 3.286 7 O -0.985 6.985 8 O -0.977 6.977 9 N -1.104 6.104 10 C 0.146 3.854 11 C 0.029 3.971 12 C -0.148 4.148 13 C -0.148 4.148 14 C -0.514 4.514 15 H 0.040 0.960 16 C 0.022 3.978 17 N -0.941 5.941 18 Si 0.925 3.075 19 H -0.284 1.284 20 H -0.318 1.318 21 H -0.203 1.203 22 C 0.020 3.980 23 C -0.180 4.180 24 C 0.564 3.436 25 N -0.833 5.833 26 O -0.566 6.566 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.165 0.835 31 H 0.153 0.847 32 H 0.425 0.575 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.054 0.946 39 H 0.030 0.970 40 H 0.071 0.929 41 H 0.262 0.738 42 H 0.165 0.835 43 H 0.414 0.586 44 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.062 -13.909 13.387 21.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.019 3.981 3 C -0.167 4.167 4 C -0.018 4.018 5 C -0.782 4.782 6 S 2.805 3.195 7 O -0.975 6.975 8 O -0.967 6.967 9 N -0.867 5.867 10 C 0.020 3.980 11 C 0.027 3.973 12 C -0.205 4.205 13 C -0.205 4.205 14 C -0.552 4.552 15 H 0.058 0.942 16 C -0.176 4.176 17 N -0.580 5.580 18 Si 0.754 3.246 19 H -0.211 1.211 20 H -0.248 1.248 21 H -0.126 1.126 22 C 0.000 4.000 23 C -0.184 4.184 24 C 0.350 3.650 25 N -0.398 5.398 26 O -0.446 6.446 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.183 0.817 31 H 0.170 0.830 32 H 0.263 0.737 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.048 0.952 40 H 0.090 0.910 41 H 0.071 0.929 42 H 0.182 0.818 43 H 0.246 0.754 44 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -9.303 -13.493 14.153 21.655 hybrid contribution 0.269 -0.478 -1.442 1.542 sum -9.034 -13.972 12.712 20.938 Atomic orbital electron populations 1.21172 0.88729 1.04099 1.03969 1.20649 0.97887 0.91867 0.87678 1.21510 0.93801 0.98946 1.02422 1.21428 0.95416 0.97223 0.87721 1.30796 1.26767 0.99842 1.20772 1.01061 0.73614 0.72631 0.72222 1.93560 1.81331 1.45162 1.77420 1.93542 1.81696 1.44417 1.77042 1.55298 1.71858 1.29347 1.30211 1.21198 0.99269 0.86450 0.91078 1.18610 0.92889 0.93681 0.92142 1.22322 0.97370 1.00516 1.00337 1.22271 1.01173 0.97727 0.99350 1.21057 1.18069 1.09577 1.06495 0.94168 1.25725 0.97116 0.96879 0.97852 1.70141 1.43764 1.23211 1.20909 0.86704 0.78046 0.80872 0.78954 1.21087 1.24768 1.12648 1.21216 0.93178 0.97543 0.88073 1.19951 0.93704 0.94002 1.10792 1.18177 0.86549 0.84755 0.75494 1.43652 1.12807 1.08005 1.75292 1.90771 1.14803 1.87695 1.51372 0.89796 0.89761 0.89779 0.81730 0.82957 0.73726 0.91312 0.91601 0.92007 0.94010 0.93966 0.92663 0.95173 0.91018 0.92926 0.81751 0.75392 0.75069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.26 8.69 71.24 0.62 -1.64 16 2 C 0.02 0.42 5.91 -19.61 -0.12 0.30 16 3 C -0.15 -2.83 9.66 22.23 0.21 -2.61 16 4 C 0.00 0.03 9.52 22.33 0.21 0.24 16 5 C -0.69 -15.43 5.94 22.23 0.13 -15.29 16 6 S 2.71 68.55 5.74 -56.49 -0.32 68.23 16 7 O -0.98 -31.44 16.74 -128.00 -2.14 -33.58 16 8 O -0.98 -26.12 17.27 -128.00 -2.21 -28.33 16 9 N -1.10 -27.98 5.44 -187.49 -1.02 -29.00 16 10 C 0.15 4.71 5.03 86.38 0.43 5.15 16 11 C 0.03 1.13 0.51 -52.93 -0.03 1.11 16 12 C -0.15 -5.57 7.45 71.98 0.54 -5.03 16 13 C -0.15 -5.04 7.66 71.98 0.55 -4.49 16 14 C -0.51 -26.25 8.61 25.60 0.22 -26.03 16 15 H 0.04 2.27 7.99 -2.91 -0.02 2.25 16 16 C 0.02 1.21 5.25 84.65 0.44 1.65 16 17 N -0.94 -56.37 13.96 21.45 0.30 -56.07 16 18 Si 0.92 41.27 22.88 68.60 1.57 42.83 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 H -0.32 -14.90 7.11 99.48 0.71 -14.19 16 21 H -0.20 -7.73 4.61 99.48 0.46 -7.27 16 22 C 0.02 0.38 9.00 22.53 0.20 0.58 16 23 C -0.18 -3.71 5.87 -20.09 -0.12 -3.83 16 24 C 0.56 11.26 7.97 86.79 0.69 11.95 16 25 N -0.83 -9.89 8.82 -175.60 -1.55 -11.44 16 26 O -0.57 -14.47 14.21 -3.91 -0.06 -14.53 16 27 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.08 1.18 8.03 -2.39 -0.02 1.16 16 29 H 0.08 1.82 5.94 -2.39 -0.01 1.81 16 30 H 0.17 2.24 8.05 -2.91 -0.02 2.22 16 31 H 0.15 3.13 7.61 -2.91 -0.02 3.11 16 32 H 0.42 9.13 6.54 -96.75 -0.63 8.49 16 33 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.07 2.28 7.75 -2.39 -0.02 2.26 16 35 H 0.06 1.86 7.49 -2.39 -0.02 1.84 16 36 H 0.04 1.67 3.88 -2.39 -0.01 1.67 16 37 H 0.04 1.62 8.11 -2.39 -0.02 1.60 16 38 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.03 1.10 2.75 -2.39 -0.01 1.10 16 40 H 0.07 1.83 6.60 -2.38 -0.02 1.82 16 41 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 42 H 0.17 2.21 6.01 -2.91 -0.02 2.19 16 43 H 0.41 3.06 6.90 -92.70 -0.64 2.42 16 44 H 0.42 3.58 8.93 -92.71 -0.83 2.75 16 Total: -1.00 -74.09 356.28 -2.70 -76.79 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: -1.26 Total: 23.01 kcal Atomic # 6 Polarization: -41.92 SS G_CDS: 4.00 Total: -37.92 kcal Atomic # 7 Polarization: -94.24 SS G_CDS: -2.27 Total: -96.51 kcal Atomic # 8 Polarization: -72.03 SS G_CDS: -4.41 Total: -76.44 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 1.57 Total: 42.83 kcal Atomic # 16 Polarization: 68.55 SS G_CDS: -0.32 Total: 68.23 kcal Total: -74.09 -2.70 -76.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416526650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.729 kcal (2) G-P(sol) polarization free energy of solvation -74.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds