Wall clock time and date at job start Tue Mar 31 2020 23:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47069 * 304.99600 * 11 10 9 13 13 N 1.46898 * 109.47357 * 64.99939 * 11 10 9 14 14 C 1.50703 * 109.46801 * 184.99876 * 11 10 9 15 15 O 1.21275 * 120.00353 * 259.99446 * 14 11 10 16 16 N 1.34781 * 119.99971 * 80.00207 * 14 11 10 17 17 C 1.46497 * 120.00245 * 179.97438 * 16 14 11 18 18 C 1.52995 * 109.47234 * 179.97438 * 17 16 14 19 19 S 1.81399 * 109.47115 * 179.97438 * 18 17 16 20 20 O 1.42104 * 110.54362 * 291.62786 * 19 18 17 21 21 O 1.42101 * 110.54204 * 68.37536 * 19 18 17 22 22 C 1.76199 * 104.45299 * 180.02562 * 19 18 17 23 23 C 1.38237 * 119.99742 * 269.73213 * 22 19 18 24 24 C 1.38239 * 119.99410 * 179.76582 * 23 22 19 25 25 C 1.38228 * 120.00421 * 0.50035 * 24 23 22 26 26 C 1.38240 * 119.99853 * 359.75213 * 25 24 23 27 27 C 1.38235 * 119.99800 * 89.99497 * 22 19 18 28 28 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 30 30 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 31 31 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 32 32 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 33 33 H 1.00899 * 111.00057 * 60.00247 * 13 11 10 34 34 H 1.00902 * 110.99515 * 183.95384 * 13 11 10 35 35 H 0.97000 * 119.99714 * 359.97438 * 16 14 11 36 36 H 1.09004 * 109.46914 * 300.00062 * 17 16 14 37 37 H 1.09009 * 109.46627 * 59.99476 * 17 16 14 38 38 H 1.09004 * 109.47555 * 300.00078 * 18 17 16 39 39 H 1.08999 * 109.47409 * 60.00423 * 18 17 16 40 40 H 1.07993 * 120.00459 * 359.97438 * 23 22 19 41 41 H 1.07998 * 119.99762 * 180.23025 * 24 23 22 42 42 H 1.08002 * 120.00394 * 179.72852 * 25 24 23 43 43 H 1.07996 * 120.00181 * 179.97438 * 26 25 24 44 44 H 1.07999 * 120.00062 * 0.02562 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 1 0.7877 -5.0072 0.8415 13 7 0.7287 -5.1181 -1.2556 14 6 2.4546 -6.1299 0.1237 15 8 2.7867 -6.7532 -0.8622 16 7 2.9571 -6.4594 1.3302 17 6 3.9040 -7.5706 1.4507 18 6 4.3168 -7.7325 2.9150 19 16 5.4888 -9.1090 3.0643 20 8 4.8412 -10.3461 2.8006 21 8 6.7241 -8.7817 2.4428 22 6 5.8708 -9.1769 4.7830 23 6 6.9353 -8.4507 5.2836 24 6 7.2320 -8.5002 6.6328 25 6 6.4707 -9.2838 7.4797 26 6 5.4094 -10.0140 6.9782 27 6 5.1094 -9.9605 5.6298 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8897 30 1 0.6240 -2.5566 0.8902 31 1 2.8718 -3.6044 0.8905 32 1 2.8718 -3.6044 -0.8895 33 1 1.3488 -5.1023 -2.0514 34 1 0.1643 -5.9545 -1.2535 35 1 2.6917 -5.9607 2.1187 36 1 3.4323 -8.4894 1.1021 37 1 4.7866 -7.3631 0.8454 38 1 4.7887 -6.8137 3.2632 39 1 3.4345 -7.9398 3.5204 40 1 7.5330 -7.8422 4.6212 41 1 8.0613 -7.9300 7.0246 42 1 6.7052 -9.3259 8.5331 43 1 4.8149 -10.6266 7.6397 44 1 4.2807 -10.5314 5.2379 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424093378.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:45 Heat of formation + Delta-G solvation = -120.638101 kcal Electronic energy + Delta-G solvation = -26144.880370 eV Core-core repulsion = 22187.773532 eV Total energy + Delta-G solvation = -3957.106837 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.08492 -40.04146 -38.29049 -37.16269 -37.03662 -36.47437 -34.80110 -32.36766 -32.14149 -31.99274 -31.88701 -28.18456 -25.97183 -24.54027 -23.73244 -23.71185 -22.36939 -21.31960 -20.08046 -19.06223 -18.74920 -18.13368 -17.58558 -17.37876 -17.17254 -16.83662 -16.68828 -16.41677 -16.37199 -15.72681 -15.52470 -15.37056 -15.04961 -14.88312 -14.48274 -14.26533 -14.03242 -13.83264 -13.52712 -13.41485 -13.29332 -13.24100 -13.17959 -12.96342 -12.80023 -12.52376 -12.26694 -12.20834 -12.19576 -11.78275 -11.66983 -11.58745 -11.23953 -10.99592 -10.47655 -10.39677 -10.28964 -10.03573 -9.63102 -8.12651 -6.22480 -1.12389 -0.18579 0.30802 1.42497 1.43970 1.45812 1.54545 1.77644 2.09211 2.45225 2.46929 2.86163 3.05150 3.20643 3.25440 3.57828 3.66058 3.86682 3.87000 3.96483 4.12097 4.12282 4.18724 4.32800 4.36704 4.39848 4.50783 4.64188 4.71389 4.80153 4.96372 4.96865 5.08842 5.21690 5.27829 5.28364 5.40152 5.59223 5.86961 5.86995 6.00886 6.10108 6.32111 6.39885 6.53760 6.96677 7.07974 7.45603 8.98451 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012989 B = 0.002155 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.171903 B =12991.047316 C =14329.162408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.001 3.999 3 Si 0.958 3.042 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.542 4.542 8 H 0.056 0.944 9 C 0.039 3.961 10 C -0.084 4.084 11 C 0.086 3.914 12 H 0.117 0.883 13 N -0.820 5.820 14 C 0.486 3.514 15 O -0.581 6.581 16 N -0.708 5.708 17 C 0.115 3.885 18 C -0.608 4.608 19 S 2.515 3.485 20 O -0.965 6.965 21 O -0.968 6.968 22 C -0.664 4.664 23 C -0.042 4.042 24 C -0.147 4.147 25 C -0.066 4.066 26 C -0.146 4.146 27 C -0.041 4.041 28 H 0.261 0.739 29 H 0.005 0.995 30 H -0.003 1.003 31 H 0.072 0.928 32 H 0.041 0.959 33 H 0.345 0.655 34 H 0.347 0.653 35 H 0.422 0.578 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.173 0.827 39 H 0.178 0.822 40 H 0.147 0.853 41 H 0.154 0.846 42 H 0.158 0.842 43 H 0.156 0.844 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.437 -21.106 18.996 30.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.783 3.217 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.580 4.580 8 H 0.074 0.926 9 C 0.001 3.999 10 C -0.123 4.123 11 C -0.029 4.029 12 H 0.135 0.865 13 N -0.349 5.349 14 C 0.272 3.728 15 O -0.460 6.460 16 N -0.363 5.363 17 C -0.010 4.010 18 C -0.738 4.738 19 S 2.698 3.302 20 O -0.962 6.962 21 O -0.965 6.965 22 C -0.753 4.753 23 C -0.061 4.061 24 C -0.166 4.166 25 C -0.084 4.084 26 C -0.165 4.165 27 C -0.059 4.059 28 H 0.070 0.930 29 H 0.023 0.977 30 H 0.015 0.985 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.260 0.740 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.191 0.809 39 H 0.196 0.804 40 H 0.165 0.835 41 H 0.172 0.828 42 H 0.176 0.824 43 H 0.174 0.826 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 11.506 -21.308 17.861 30.090 hybrid contribution 0.463 0.652 0.586 0.992 sum 11.969 -20.655 18.447 30.169 Atomic orbital electron populations 1.70105 1.07598 1.27462 1.51838 1.25892 0.95693 1.02992 0.95091 0.85555 0.78814 0.79069 0.78224 1.20376 1.20805 1.18698 1.21738 0.93370 0.92735 1.50176 0.92595 1.18833 0.93901 0.91273 0.95864 1.21427 0.97787 0.92011 1.01045 1.21681 0.93676 0.91803 0.95784 0.86536 1.58986 1.27214 1.45329 1.03337 1.22542 0.81964 0.85412 0.82915 1.90661 1.61824 1.55170 1.38380 1.45908 1.45655 1.34389 1.10318 1.21053 0.94482 0.91980 0.93527 1.30505 1.18784 1.20977 1.03566 1.04577 0.75222 0.75988 0.74383 1.93545 1.77604 1.40832 1.84256 1.93550 1.42299 1.85496 1.75152 1.30252 1.08750 1.12339 1.23991 1.21263 0.93256 0.94516 0.97106 1.21690 1.01357 1.00402 0.93126 1.21956 0.92659 0.92189 1.01592 1.21704 0.98809 1.00601 0.95341 1.21274 0.97141 0.93440 0.94088 0.92974 0.97692 0.98488 0.90950 0.93978 0.84126 0.83937 0.73969 0.90150 0.90832 0.80893 0.80416 0.83525 0.82823 0.82398 0.82591 0.83188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.93 13.29 21.45 0.28 -55.64 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.96 43.79 29.54 68.60 2.03 45.81 16 4 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 7 C -0.54 -30.12 9.11 25.60 0.23 -29.88 16 8 H 0.06 2.99 7.74 -2.91 -0.02 2.97 16 9 C 0.04 1.94 4.86 29.85 0.15 2.08 16 10 C -0.08 -3.23 4.78 30.59 0.15 -3.08 16 11 C 0.09 2.69 3.15 44.17 0.14 2.82 16 12 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 13 N -0.82 -26.81 8.44 -171.80 -1.45 -28.26 16 14 C 0.49 14.02 7.07 87.66 0.62 14.64 16 15 O -0.58 -20.64 16.25 -3.01 -0.05 -20.69 16 16 N -0.71 -14.44 5.56 -463.05 -2.57 -17.02 16 17 C 0.12 2.13 5.68 86.38 0.49 2.62 16 18 C -0.61 -6.01 6.09 71.98 0.44 -5.57 16 19 S 2.51 40.72 5.16 -56.49 -0.29 40.42 16 20 O -0.97 -21.51 17.12 -127.65 -2.19 -23.69 16 21 O -0.97 -22.56 17.12 -127.65 -2.19 -24.75 16 22 C -0.66 -9.23 5.66 22.27 0.13 -9.11 16 23 C -0.04 -0.55 9.47 22.27 0.21 -0.34 16 24 C -0.15 -1.40 10.05 22.27 0.22 -1.18 16 25 C -0.07 -0.51 10.05 22.27 0.22 -0.28 16 26 C -0.15 -1.29 10.05 22.27 0.22 -1.06 16 27 C -0.04 -0.49 9.47 22.27 0.21 -0.28 16 28 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 29 H 0.00 0.26 7.75 -2.39 -0.02 0.24 16 30 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 31 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.35 11.69 8.58 -89.69 -0.77 10.92 16 34 H 0.35 9.67 9.06 -89.69 -0.81 8.86 16 35 H 0.42 6.01 8.47 -92.71 -0.79 5.22 16 36 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.17 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.18 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.15 1.66 7.57 -2.91 -0.02 1.64 16 41 H 0.15 0.74 8.06 -2.91 -0.02 0.72 16 42 H 0.16 0.29 8.06 -2.91 -0.02 0.27 16 43 H 0.16 0.57 8.06 -2.91 -0.02 0.54 16 44 H 0.15 1.45 7.57 -2.91 -0.02 1.43 16 Total: -1.00 -83.88 389.10 -3.86 -87.73 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: -1.33 Total: 24.16 kcal Atomic # 6 Polarization: -31.98 SS G_CDS: 3.89 Total: -28.09 kcal Atomic # 7 Polarization: -97.18 SS G_CDS: -3.74 Total: -100.91 kcal Atomic # 8 Polarization: -64.71 SS G_CDS: -4.42 Total: -69.13 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: 40.72 SS G_CDS: -0.29 Total: 40.42 kcal Total: -83.88 -3.86 -87.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424093378.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.905 kcal (2) G-P(sol) polarization free energy of solvation -83.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds