Wall clock time and date at job start Tue Mar 31 2020 23:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00050 * 2 1 4 4 H 1.48502 * 109.47082 * 240.00026 * 3 2 1 5 5 H 1.48505 * 109.47032 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47219 * 119.99858 * 3 2 1 7 7 C 1.37874 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00362 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99700 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.47293 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47136 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.47011 * 55.00017 * 11 10 9 13 13 N 1.46895 * 109.47263 * 294.99687 * 11 10 9 14 14 C 1.50702 * 109.46732 * 174.99999 * 11 10 9 15 15 O 1.21283 * 120.00262 * 100.00162 * 14 11 10 16 16 N 1.34777 * 119.99928 * 279.72068 * 14 11 10 17 17 C 1.46499 * 120.00199 * 180.27479 * 16 14 11 18 18 C 1.52997 * 109.47555 * 180.02562 * 17 16 14 19 19 S 1.81394 * 109.47321 * 179.97438 * 18 17 16 20 20 O 1.42096 * 110.54614 * 291.62677 * 19 18 17 21 21 O 1.42100 * 110.54187 * 68.38107 * 19 18 17 22 22 C 1.76202 * 104.44989 * 180.02562 * 19 18 17 23 23 C 1.38236 * 120.00110 * 269.72724 * 22 19 18 24 24 C 1.38233 * 119.99937 * 179.76114 * 23 22 19 25 25 C 1.38234 * 119.99945 * 0.51460 * 24 23 22 26 26 C 1.38238 * 120.00126 * 359.74267 * 25 24 23 27 27 C 1.38234 * 119.99671 * 0.02562 * 26 25 24 28 28 H 0.97000 * 120.00058 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47462 * 59.99624 * 9 7 2 30 30 H 1.09001 * 109.47503 * 299.99203 * 9 7 2 31 31 H 1.08995 * 109.46737 * 59.99327 * 10 9 7 32 32 H 1.09001 * 109.46469 * 300.00172 * 10 9 7 33 33 H 1.00901 * 111.00088 * 300.00693 * 13 11 10 34 34 H 1.00898 * 111.00134 * 63.95809 * 13 11 10 35 35 H 0.97000 * 120.00317 * 0.28382 * 16 14 11 36 36 H 1.08998 * 109.47134 * 300.00670 * 17 16 14 37 37 H 1.09002 * 109.46857 * 59.99862 * 17 16 14 38 38 H 1.08998 * 109.47382 * 300.00439 * 18 17 16 39 39 H 1.09005 * 109.46800 * 60.00640 * 18 17 16 40 40 H 1.07997 * 120.00008 * 0.02562 * 23 22 19 41 41 H 1.07999 * 120.00106 * 180.22906 * 24 23 22 42 42 H 1.08003 * 120.00178 * 179.71661 * 25 24 23 43 43 H 1.07993 * 119.99861 * 179.97438 * 26 25 24 44 44 H 1.07997 * 119.99644 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 1 0.7879 -5.0072 -0.8404 13 7 0.7290 -5.1181 1.2567 14 6 2.4549 -6.1298 -0.1227 15 8 2.7871 -6.7531 0.8633 16 7 2.9530 -6.4628 -1.3299 17 6 3.8958 -7.5775 -1.4512 18 6 4.3042 -7.7430 -2.9163 19 16 5.4722 -9.1228 -3.0664 20 8 6.7100 -8.7978 -2.4488 21 8 4.8220 -10.3577 -2.7990 22 6 5.8505 -9.1937 -4.7858 23 6 5.0889 -9.9807 -5.6293 24 6 5.3826 -10.0324 -6.9791 25 6 6.4446 -9.3054 -7.4836 26 6 7.2096 -8.5225 -6.6393 27 6 6.9128 -8.4671 -5.2903 28 1 -0.4850 0.8400 0.0004 29 1 0.6246 -2.5570 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 2.8720 -3.6043 0.8904 32 1 2.8719 -3.6043 -0.8895 33 1 1.3491 -5.1021 2.0525 34 1 0.0242 -4.4001 1.3330 35 1 2.6874 -5.9643 -2.1185 36 1 4.7806 -7.3722 -0.8487 37 1 3.4218 -8.4941 -1.1000 38 1 3.4196 -7.9481 -3.5192 39 1 4.7785 -6.8264 -3.2671 40 1 4.2617 -10.5518 -5.2344 41 1 4.7853 -10.6443 -7.6387 42 1 6.6770 -9.3493 -8.5374 43 1 8.0395 -7.9549 -7.0334 44 1 7.5107 -7.8558 -4.6306 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424093379.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:49 Heat of formation + Delta-G solvation = -90.734612 kcal Electronic energy + Delta-G solvation = -26145.445377 eV Core-core repulsion = 22189.635252 eV Total energy + Delta-G solvation = -3955.810125 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.72999 -39.60224 -37.50575 -36.34832 -35.94926 -35.21903 -32.88946 -31.87655 -31.55673 -31.25340 -29.92348 -26.71222 -24.65125 -23.76284 -23.27012 -22.85274 -20.87523 -20.01179 -19.39829 -18.44828 -17.52962 -16.86418 -16.65398 -16.34899 -16.13730 -15.93924 -15.71739 -15.07176 -15.03713 -14.74523 -14.49144 -14.11463 -14.05854 -14.04996 -13.54305 -13.14823 -13.04913 -12.75529 -12.74272 -12.46552 -12.38517 -12.27288 -12.11276 -11.79403 -11.72031 -11.50488 -11.13303 -11.07364 -10.94140 -10.73984 -10.03251 -9.99811 -9.91486 -9.58180 -9.35004 -9.26598 -9.18230 -8.47248 -8.23502 -6.11835 -4.15236 -0.46598 0.30709 0.75829 2.41427 2.82937 2.89331 3.13583 3.25923 3.31068 3.33391 3.51096 3.66729 3.96834 4.16482 4.36343 4.36454 4.39702 4.45407 4.77937 4.85465 4.90472 4.95792 5.13235 5.13648 5.22538 5.24331 5.38356 5.39670 5.52460 5.53810 5.68724 5.70292 5.81833 6.22728 6.28360 6.28695 6.46898 6.82528 7.34631 7.47097 7.55282 7.61093 7.84758 7.87146 8.27039 8.34262 8.90502 9.49827 10.98978 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013071 B = 0.002150 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.566708 B =13021.744207 C =14347.387665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.025 3.975 10 C -0.139 4.139 11 C 0.076 3.924 12 H 0.098 0.902 13 N -0.831 5.831 14 C 0.525 3.475 15 O -0.533 6.533 16 N -0.730 5.730 17 C 0.131 3.869 18 C -0.628 4.628 19 S 2.507 3.493 20 O -0.928 6.928 21 O -0.929 6.929 22 C -0.660 4.660 23 C -0.024 4.024 24 C -0.141 4.141 25 C -0.065 4.065 26 C -0.141 4.141 27 C -0.023 4.023 28 H 0.262 0.738 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.346 0.654 34 H 0.355 0.645 35 H 0.406 0.594 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.143 0.857 41 H 0.134 0.866 42 H 0.131 0.869 43 H 0.134 0.866 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.528 -19.260 -16.462 27.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.178 4.178 11 C -0.039 4.039 12 H 0.116 0.884 13 N -0.363 5.363 14 C 0.312 3.688 15 O -0.408 6.408 16 N -0.385 5.385 17 C 0.006 3.994 18 C -0.756 4.756 19 S 2.686 3.314 20 O -0.925 6.925 21 O -0.926 6.926 22 C -0.747 4.747 23 C -0.043 4.043 24 C -0.160 4.160 25 C -0.083 4.083 26 C -0.159 4.159 27 C -0.042 4.042 28 H 0.072 0.928 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.160 0.840 34 H 0.171 0.829 35 H 0.241 0.759 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.163 0.837 39 H 0.164 0.836 40 H 0.161 0.839 41 H 0.151 0.849 42 H 0.149 0.851 43 H 0.152 0.848 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 10.698 -20.851 -15.372 28.027 hybrid contribution 0.520 2.691 -1.209 2.996 sum 11.218 -18.160 -16.581 27.029 Atomic orbital electron populations 1.69934 1.06022 1.26942 1.50282 1.25012 0.94878 0.99320 0.95094 0.86637 0.79587 0.82987 0.78676 1.20239 1.21210 1.20188 1.21137 0.92985 0.90889 1.51330 0.92758 1.19102 0.93697 0.91071 0.97390 1.22405 0.99927 0.93919 1.01599 1.21468 0.94587 0.92068 0.95799 0.88414 1.58739 1.18478 1.55945 1.03150 1.21011 0.81048 0.84553 0.82220 1.90659 1.59812 1.53281 1.37017 1.45896 1.47425 1.34614 1.10603 1.20870 0.95112 0.92532 0.90915 1.30659 1.18131 1.21178 1.05657 1.05170 0.75820 0.76209 0.74224 1.93600 1.40008 1.85016 1.73903 1.93595 1.77110 1.38688 1.83246 1.30567 1.07839 1.11010 1.25275 1.21027 0.96654 0.93222 0.93376 1.21348 0.98528 1.00596 0.95519 1.21557 0.93335 0.93217 1.00223 1.21358 1.00718 1.00255 0.93602 1.21043 0.93038 0.94017 0.96108 0.92791 0.96342 0.96338 0.92539 0.92504 0.84035 0.82926 0.75939 0.89861 0.89827 0.83683 0.83593 0.83901 0.84859 0.85114 0.84824 0.83853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.53 -14.14 9.11 -34.44 -0.31 -14.46 16 8 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 9 C 0.02 0.58 4.74 -27.88 -0.13 0.45 16 10 C -0.14 -2.62 4.78 -26.73 -0.13 -2.75 16 11 C 0.08 1.24 3.21 -68.87 -0.22 1.02 16 12 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 13 N -0.83 -14.00 8.94 -5.66 -0.05 -14.05 16 14 C 0.52 8.38 7.08 -10.98 -0.08 8.30 16 15 O -0.53 -10.22 16.25 5.55 0.09 -10.13 16 16 N -0.73 -8.62 5.56 -60.29 -0.33 -8.95 16 17 C 0.13 1.36 5.68 -4.04 -0.02 1.33 16 18 C -0.63 -3.95 6.09 37.16 0.23 -3.72 16 19 S 2.51 21.18 5.16 -107.50 -0.55 20.63 16 20 O -0.93 -10.69 17.12 -57.54 -0.99 -11.67 16 21 O -0.93 -10.46 17.12 -57.54 -0.99 -11.45 16 22 C -0.66 -5.00 5.66 -39.58 -0.22 -5.22 16 23 C -0.02 -0.16 9.47 -39.58 -0.37 -0.54 16 24 C -0.14 -0.80 10.05 -39.58 -0.40 -1.20 16 25 C -0.07 -0.34 10.05 -39.58 -0.40 -0.74 16 26 C -0.14 -0.83 10.05 -39.58 -0.40 -1.23 16 27 C -0.02 -0.16 9.47 -39.58 -0.37 -0.54 16 28 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.35 5.94 8.58 -39.29 -0.34 5.60 16 34 H 0.36 5.98 7.55 -39.29 -0.30 5.68 16 35 H 0.41 3.69 8.47 -40.82 -0.35 3.34 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.14 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.15 0.62 8.14 -51.92 -0.42 0.20 16 40 H 0.14 0.79 7.57 -52.49 -0.40 0.40 16 41 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 42 H 0.13 0.36 8.06 -52.48 -0.42 -0.06 16 43 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 44 H 0.14 0.86 7.57 -52.49 -0.40 0.46 16 LS Contribution 387.15 15.07 5.83 5.83 Total: -1.00 -37.17 387.15 -10.53 -47.70 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -6.32 Total: 8.84 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -2.93 Total: -17.78 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: 0.35 Total: -47.94 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -1.88 Total: -33.25 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 21.18 SS G_CDS: -0.55 Total: 20.63 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.17 -10.53 -47.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424093379.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.036 kcal (2) G-P(sol) polarization free energy of solvation -37.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds