Wall clock time and date at job start Tue Mar 31 2020 23:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00050 * 2 1 4 4 H 1.48502 * 109.47082 * 240.00026 * 3 2 1 5 5 H 1.48505 * 109.47032 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47219 * 119.99858 * 3 2 1 7 7 C 1.37874 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00362 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99700 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.47293 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47136 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.47011 * 55.00017 * 11 10 9 13 13 N 1.46895 * 109.47263 * 294.99687 * 11 10 9 14 14 C 1.50702 * 109.46732 * 174.99999 * 11 10 9 15 15 O 1.21283 * 120.00262 * 100.00162 * 14 11 10 16 16 N 1.34777 * 119.99928 * 279.72068 * 14 11 10 17 17 C 1.46499 * 120.00199 * 180.27479 * 16 14 11 18 18 C 1.52997 * 109.47555 * 180.02562 * 17 16 14 19 19 S 1.81394 * 109.47321 * 179.97438 * 18 17 16 20 20 O 1.42096 * 110.54614 * 291.62677 * 19 18 17 21 21 O 1.42100 * 110.54187 * 68.38107 * 19 18 17 22 22 C 1.76202 * 104.44989 * 180.02562 * 19 18 17 23 23 C 1.38236 * 120.00110 * 269.72724 * 22 19 18 24 24 C 1.38233 * 119.99937 * 179.76114 * 23 22 19 25 25 C 1.38234 * 119.99945 * 0.51460 * 24 23 22 26 26 C 1.38238 * 120.00126 * 359.74267 * 25 24 23 27 27 C 1.38234 * 119.99671 * 0.02562 * 26 25 24 28 28 H 0.97000 * 120.00058 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47462 * 59.99624 * 9 7 2 30 30 H 1.09001 * 109.47503 * 299.99203 * 9 7 2 31 31 H 1.08995 * 109.46737 * 59.99327 * 10 9 7 32 32 H 1.09001 * 109.46469 * 300.00172 * 10 9 7 33 33 H 1.00901 * 111.00088 * 300.00693 * 13 11 10 34 34 H 1.00898 * 111.00134 * 63.95809 * 13 11 10 35 35 H 0.97000 * 120.00317 * 0.28382 * 16 14 11 36 36 H 1.08998 * 109.47134 * 300.00670 * 17 16 14 37 37 H 1.09002 * 109.46857 * 59.99862 * 17 16 14 38 38 H 1.08998 * 109.47382 * 300.00439 * 18 17 16 39 39 H 1.09005 * 109.46800 * 60.00640 * 18 17 16 40 40 H 1.07997 * 120.00008 * 0.02562 * 23 22 19 41 41 H 1.07999 * 120.00106 * 180.22906 * 24 23 22 42 42 H 1.08003 * 120.00178 * 179.71661 * 25 24 23 43 43 H 1.07993 * 119.99861 * 179.97438 * 26 25 24 44 44 H 1.07997 * 119.99644 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 1 0.7879 -5.0072 -0.8404 13 7 0.7290 -5.1181 1.2567 14 6 2.4549 -6.1298 -0.1227 15 8 2.7871 -6.7531 0.8633 16 7 2.9530 -6.4628 -1.3299 17 6 3.8958 -7.5775 -1.4512 18 6 4.3042 -7.7430 -2.9163 19 16 5.4722 -9.1228 -3.0664 20 8 6.7100 -8.7978 -2.4488 21 8 4.8220 -10.3577 -2.7990 22 6 5.8505 -9.1937 -4.7858 23 6 5.0889 -9.9807 -5.6293 24 6 5.3826 -10.0324 -6.9791 25 6 6.4446 -9.3054 -7.4836 26 6 7.2096 -8.5225 -6.6393 27 6 6.9128 -8.4671 -5.2903 28 1 -0.4850 0.8400 0.0004 29 1 0.6246 -2.5570 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 2.8720 -3.6043 0.8904 32 1 2.8719 -3.6043 -0.8895 33 1 1.3491 -5.1021 2.0525 34 1 0.0242 -4.4001 1.3330 35 1 2.6874 -5.9643 -2.1185 36 1 4.7806 -7.3722 -0.8487 37 1 3.4218 -8.4941 -1.1000 38 1 3.4196 -7.9481 -3.5192 39 1 4.7785 -6.8264 -3.2671 40 1 4.2617 -10.5518 -5.2344 41 1 4.7853 -10.6443 -7.6387 42 1 6.6770 -9.3493 -8.5374 43 1 8.0395 -7.9549 -7.0334 44 1 7.5107 -7.8558 -4.6306 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424093379.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:48 Heat of formation + Delta-G solvation = -120.173937 kcal Electronic energy + Delta-G solvation = -26146.721962 eV Core-core repulsion = 22189.635252 eV Total energy + Delta-G solvation = -3957.086710 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.97905 -40.03152 -38.27218 -37.28323 -37.09920 -36.46599 -34.83044 -32.35435 -32.11640 -31.98299 -31.67161 -28.22706 -26.07763 -24.58997 -23.74647 -23.70080 -22.40703 -21.31140 -20.06266 -19.05973 -18.92864 -18.15675 -17.55113 -17.33311 -16.93487 -16.82649 -16.57450 -16.43769 -15.94434 -15.74745 -15.52510 -15.42145 -15.25968 -14.61999 -14.55047 -14.47198 -14.02962 -13.97508 -13.52192 -13.43242 -13.27374 -13.22785 -13.16081 -12.99041 -12.87172 -12.66598 -12.53422 -12.20169 -12.19770 -11.79099 -11.73285 -11.61130 -11.30593 -10.78074 -10.54699 -10.37853 -10.25029 -10.02578 -9.64169 -8.20595 -6.30719 -1.10635 -0.17466 0.31838 1.40700 1.42131 1.49865 1.55812 1.79196 2.06385 2.40588 2.47438 2.87675 3.07052 3.13204 3.27796 3.68124 3.76269 3.80874 3.88636 3.97616 4.12970 4.13936 4.22057 4.25736 4.38646 4.40816 4.52676 4.66590 4.68423 4.72366 4.85819 4.97967 5.09954 5.10415 5.26262 5.29321 5.41036 5.48067 5.67359 5.82012 5.87991 6.07514 6.22329 6.46656 6.48729 6.84919 7.16937 7.38366 8.89841 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013071 B = 0.002150 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.566708 B =13021.744207 C =14347.387665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.005 3.995 3 Si 0.957 3.043 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.545 4.545 8 H 0.055 0.945 9 C 0.030 3.970 10 C -0.123 4.123 11 C 0.082 3.918 12 H 0.116 0.884 13 N -0.832 5.832 14 C 0.524 3.476 15 O -0.570 6.570 16 N -0.711 5.711 17 C 0.118 3.882 18 C -0.608 4.608 19 S 2.515 3.485 20 O -0.967 6.967 21 O -0.965 6.965 22 C -0.664 4.664 23 C -0.041 4.041 24 C -0.146 4.146 25 C -0.066 4.066 26 C -0.147 4.147 27 C -0.042 4.042 28 H 0.264 0.736 29 H 0.004 0.996 30 H 0.002 0.998 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.344 0.656 34 H 0.354 0.646 35 H 0.421 0.579 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.178 0.822 39 H 0.174 0.826 40 H 0.150 0.850 41 H 0.156 0.844 42 H 0.158 0.842 43 H 0.154 0.846 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.234 -18.962 -18.932 29.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.783 3.217 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.583 4.583 8 H 0.073 0.927 9 C -0.008 4.008 10 C -0.163 4.163 11 C -0.034 4.034 12 H 0.133 0.867 13 N -0.363 5.363 14 C 0.311 3.689 15 O -0.448 6.448 16 N -0.366 5.366 17 C -0.008 4.008 18 C -0.738 4.738 19 S 2.699 3.301 20 O -0.965 6.965 21 O -0.962 6.962 22 C -0.753 4.753 23 C -0.060 4.060 24 C -0.165 4.165 25 C -0.084 4.084 26 C -0.166 4.166 27 C -0.061 4.061 28 H 0.072 0.928 29 H 0.023 0.977 30 H 0.020 0.980 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.157 0.843 34 H 0.169 0.831 35 H 0.259 0.741 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.196 0.804 39 H 0.192 0.808 40 H 0.168 0.832 41 H 0.174 0.826 42 H 0.176 0.824 43 H 0.172 0.828 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 11.427 -20.577 -17.866 29.549 hybrid contribution 0.293 2.577 -0.526 2.646 sum 11.720 -18.000 -18.392 28.278 Atomic orbital electron populations 1.70049 1.07459 1.27801 1.51327 1.25853 0.95720 1.02932 0.94819 0.85617 0.78375 0.78728 0.79023 1.19108 1.20943 1.19779 1.21599 0.93366 0.92463 1.50849 0.92671 1.18974 0.94045 0.91930 0.95814 1.22164 0.98846 0.93616 1.01665 1.21429 0.94733 0.91024 0.96185 0.86650 1.58760 1.18455 1.55715 1.03402 1.20860 0.80903 0.84241 0.82916 1.90648 1.61070 1.54559 1.38532 1.45717 1.46472 1.34518 1.09910 1.21028 0.94451 0.91736 0.93543 1.30505 1.18774 1.21020 1.03519 1.04568 0.75204 0.75993 0.74384 1.93548 1.42094 1.85522 1.75289 1.93546 1.77514 1.41000 1.84174 1.30256 1.08784 1.12250 1.24017 1.21275 0.97110 0.93447 0.94124 1.21699 0.98843 1.00625 0.95293 1.21954 0.92645 0.92216 1.01594 1.21690 1.01340 1.00403 0.93153 1.21262 0.93239 0.94542 0.97069 0.92755 0.97724 0.98016 0.93781 0.91061 0.84335 0.83130 0.74051 0.90667 0.90207 0.80429 0.80831 0.83212 0.82608 0.82407 0.82817 0.83493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.45 13.29 21.45 0.28 -53.17 16 2 C 0.01 0.29 5.46 84.65 0.46 0.75 16 3 Si 0.96 42.59 29.54 68.60 2.03 44.62 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.54 -29.18 9.11 25.60 0.23 -28.95 16 8 H 0.06 2.87 7.74 -2.91 -0.02 2.85 16 9 C 0.03 1.40 4.74 29.85 0.14 1.54 16 10 C -0.12 -4.56 4.78 30.60 0.15 -4.41 16 11 C 0.08 2.58 3.21 44.17 0.14 2.73 16 12 H 0.12 3.25 8.14 -2.39 -0.02 3.23 16 13 N -0.83 -27.92 8.94 -171.82 -1.54 -29.46 16 14 C 0.52 16.16 7.08 87.66 0.62 16.78 16 15 O -0.57 -21.78 16.25 -3.04 -0.05 -21.83 16 16 N -0.71 -15.34 5.56 -463.06 -2.57 -17.91 16 17 C 0.12 2.28 5.68 86.38 0.49 2.77 16 18 C -0.61 -6.32 6.09 71.98 0.44 -5.89 16 19 S 2.51 41.77 5.16 -56.49 -0.29 41.48 16 20 O -0.97 -22.80 17.12 -127.65 -2.19 -24.99 16 21 O -0.97 -22.05 17.12 -127.65 -2.19 -24.24 16 22 C -0.66 -9.42 5.66 22.27 0.13 -9.29 16 23 C -0.04 -0.50 9.47 22.27 0.21 -0.29 16 24 C -0.15 -1.32 10.05 22.27 0.22 -1.10 16 25 C -0.07 -0.52 10.05 22.27 0.22 -0.30 16 26 C -0.15 -1.42 10.05 22.27 0.22 -1.20 16 27 C -0.04 -0.55 9.47 22.27 0.21 -0.34 16 28 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 29 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.00 0.08 6.87 -2.39 -0.02 0.06 16 31 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.34 11.89 8.58 -89.69 -0.77 11.12 16 34 H 0.35 11.99 7.55 -89.70 -0.68 11.31 16 35 H 0.42 6.34 8.47 -92.71 -0.79 5.55 16 36 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.18 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.17 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.15 1.51 7.57 -2.91 -0.02 1.49 16 41 H 0.16 0.61 8.06 -2.91 -0.02 0.59 16 42 H 0.16 0.31 8.06 -2.91 -0.02 0.29 16 43 H 0.15 0.76 8.06 -2.91 -0.02 0.73 16 44 H 0.15 1.68 7.57 -2.91 -0.02 1.65 16 Total: -1.00 -80.68 387.15 -3.81 -84.49 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: -1.19 Total: 28.21 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 3.89 Total: -27.20 kcal Atomic # 7 Polarization: -96.72 SS G_CDS: -3.82 Total: -100.54 kcal Atomic # 8 Polarization: -66.64 SS G_CDS: -4.42 Total: -71.06 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Atomic # 16 Polarization: 41.77 SS G_CDS: -0.29 Total: 41.48 kcal Total: -80.68 -3.81 -84.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424093379.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.686 kcal (2) G-P(sol) polarization free energy of solvation -80.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds