Wall clock time and date at job start Tue Mar 31 2020 23:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00146 * 2 1 4 4 H 1.48499 * 109.47284 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47230 * 300.00375 * 3 2 1 6 6 H 1.48502 * 109.46866 * 59.99960 * 3 2 1 7 7 C 1.37873 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99982 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00086 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47014 * 180.02562 * 9 7 2 11 11 C 1.34776 * 119.99551 * 179.97438 * 10 9 7 12 12 O 1.21584 * 120.00449 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99811 * 179.97438 * 11 10 9 14 14 C 1.46505 * 120.00211 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47337 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47096 * 180.02562 * 15 14 13 17 17 S 1.81408 * 109.47011 * 180.02562 * 16 15 14 18 18 O 1.42105 * 108.57542 * 65.51943 * 17 16 15 19 19 O 1.42092 * 108.57879 * 294.49080 * 17 16 15 20 20 C 1.81396 * 101.91803 * 180.02562 * 17 16 15 21 21 C 1.50707 * 109.47003 * 180.02562 * 20 17 16 22 22 C 1.38238 * 119.99792 * 90.00226 * 21 20 17 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.98162 * 21 20 17 27 27 H 0.97006 * 120.00113 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47079 * 59.99885 * 9 7 2 29 29 H 1.08993 * 109.46701 * 299.99957 * 9 7 2 30 30 H 0.96998 * 120.00359 * 359.97438 * 10 9 7 31 31 H 0.96998 * 120.00099 * 0.02562 * 13 11 10 32 32 H 1.09010 * 109.46606 * 60.00349 * 14 13 11 33 33 H 1.08999 * 109.47075 * 300.00693 * 14 13 11 34 34 H 1.09010 * 109.47004 * 60.00572 * 15 14 13 35 35 H 1.08999 * 109.47587 * 300.00358 * 15 14 13 36 36 H 1.09007 * 109.47071 * 60.00810 * 16 15 14 37 37 H 1.08996 * 109.47462 * 300.00148 * 16 15 14 38 38 H 1.09005 * 109.47589 * 60.00614 * 20 17 16 39 39 H 1.09000 * 109.47576 * 299.99772 * 20 17 16 40 40 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 41 41 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 44 44 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7537 -4.8833 0.0000 12 8 0.5584 -5.1055 0.0000 13 7 2.6295 -5.9077 -0.0005 14 6 2.1412 -7.2890 0.0006 15 6 3.3312 -8.2506 0.0004 16 6 2.8211 -9.6931 0.0009 17 16 4.2321 -10.8333 0.0014 18 8 4.9350 -10.6832 1.2272 19 8 4.9352 -10.6841 -1.2244 20 6 3.4079 -12.4492 0.0012 21 6 4.4454 -13.5423 0.0022 22 6 4.9203 -14.0433 1.1998 23 6 5.8716 -15.0463 1.2007 24 6 6.3475 -15.5487 0.0040 25 6 5.8765 -15.0440 -1.1936 26 6 4.9218 -14.0442 -1.1945 27 1 -0.4850 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6248 -2.5570 0.8896 30 1 3.1567 -3.4354 -0.0009 31 1 3.5832 -5.7305 -0.0009 32 1 1.5347 -7.4606 -0.8888 33 1 1.5365 -7.4598 0.8913 34 1 3.9373 -8.0789 0.8900 35 1 3.9362 -8.0799 -0.8901 36 1 2.2153 -9.8646 -0.8889 37 1 2.2159 -9.8642 0.8911 38 1 2.7854 -12.5396 -0.8891 39 1 2.7848 -12.5395 0.8910 40 1 4.5482 -13.6511 2.1348 41 1 6.2430 -15.4375 2.1364 42 1 7.0904 -16.3326 0.0048 43 1 6.2515 -15.4333 -2.1285 44 1 4.5502 -13.6532 -2.1302 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426439363.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:27 Heat of formation + Delta-G solvation = -85.952111 kcal Electronic energy + Delta-G solvation = -25427.909065 eV Core-core repulsion = 21472.306325 eV Total energy + Delta-G solvation = -3955.602740 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.76259 -39.23667 -37.35483 -36.43104 -35.94642 -34.08596 -33.61322 -32.84361 -32.09120 -31.41857 -28.23076 -27.56734 -26.05247 -23.13024 -22.84966 -22.20871 -21.73325 -20.18494 -19.27805 -18.06909 -17.44331 -17.35031 -16.80883 -16.38820 -16.03268 -15.89579 -15.68578 -15.39736 -15.38526 -14.59247 -14.50527 -13.94535 -13.90371 -13.68663 -13.35398 -13.30764 -13.25544 -13.05865 -12.79455 -12.43215 -12.35105 -12.22608 -11.95732 -11.90533 -11.88356 -11.54710 -11.49294 -11.31688 -10.94768 -10.89044 -10.86575 -10.29402 -9.44550 -9.43843 -9.34041 -9.22387 -8.81410 -8.68374 -7.75896 -6.14437 -4.20808 -0.59982 0.83286 0.88946 2.29251 3.04075 3.25204 3.26059 3.31949 3.34719 3.41280 3.52035 3.87279 3.93634 4.07514 4.22480 4.35689 4.36211 4.49825 4.58355 4.61891 4.62884 4.82860 4.96219 5.01662 5.07564 5.13272 5.15849 5.21900 5.34820 5.42281 5.51819 5.79512 5.87872 5.92017 5.94092 6.00649 6.44116 6.80568 7.11271 7.51867 7.56109 7.57988 7.90886 8.04875 8.77601 8.94234 9.33044 9.48681 10.95884 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.040321 B = 0.001488 C = 0.001472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.262130 B =18810.046031 C =19018.927017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.266 3.734 10 N -0.729 5.729 11 C 0.693 3.307 12 O -0.602 6.602 13 N -0.761 5.761 14 C 0.150 3.850 15 C -0.125 4.125 16 C -0.609 4.609 17 S 2.413 3.587 18 O -0.929 6.929 19 O -0.929 6.929 20 C -0.570 4.570 21 C -0.093 4.093 22 C -0.103 4.103 23 C -0.119 4.119 24 C -0.111 4.111 25 C -0.119 4.119 26 C -0.102 4.102 27 H 0.265 0.735 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.387 0.613 31 H 0.393 0.607 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.129 0.871 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.046 -33.467 0.007 35.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.381 5.381 11 C 0.393 3.607 12 O -0.481 6.481 13 N -0.419 5.419 14 C 0.024 3.976 15 C -0.164 4.164 16 C -0.738 4.738 17 S 2.596 3.404 18 O -0.926 6.926 19 O -0.926 6.926 20 C -0.696 4.696 21 C -0.094 4.094 22 C -0.122 4.122 23 C -0.137 4.137 24 C -0.129 4.129 25 C -0.137 4.137 26 C -0.121 4.121 27 H 0.075 0.925 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.219 0.781 31 H 0.226 0.774 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.157 0.843 37 H 0.156 0.844 38 H 0.161 0.839 39 H 0.161 0.839 40 H 0.149 0.851 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.147 0.853 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 10.611 -33.289 0.007 34.939 hybrid contribution 0.269 0.840 0.001 0.882 sum 10.879 -32.448 0.008 34.224 Atomic orbital electron populations 1.69991 1.06099 1.27144 1.49091 1.24946 0.94913 0.99421 0.94768 0.86352 0.79813 0.82947 0.77710 1.19657 1.20828 1.20824 1.21273 0.93334 0.90424 1.52948 0.91861 1.18996 0.87804 0.81097 0.97632 1.45721 1.10855 1.04389 1.77111 1.16132 0.85151 0.81073 0.78391 1.90868 1.14238 1.84273 1.58716 1.45137 1.09015 1.05047 1.82676 1.20950 0.94546 0.79478 1.02648 1.21519 0.99596 0.90553 1.04715 1.30284 1.20175 1.11028 1.12340 1.08456 0.78312 0.77891 0.75787 1.93601 1.68846 1.84698 1.45463 1.93598 1.68845 1.84704 1.45468 1.29373 1.09501 1.18160 1.12579 1.18915 0.97961 0.98070 0.94492 1.21198 0.97046 0.96415 0.97491 1.21205 0.97070 0.96860 0.98571 1.21311 0.99449 0.99628 0.92561 1.21206 0.97054 0.96881 0.98563 1.21197 0.97006 0.96441 0.97505 0.92533 0.95708 0.95717 0.78082 0.77383 0.91486 0.91499 0.89400 0.89404 0.84347 0.84356 0.83868 0.83877 0.85107 0.85347 0.85561 0.85345 0.85108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.54 -14.85 9.28 -34.44 -0.32 -15.17 16 8 H 0.06 1.63 7.60 -52.48 -0.40 1.23 16 9 C 0.27 7.18 5.43 -5.19 -0.03 7.16 16 10 N -0.73 -15.75 5.55 -66.42 -0.37 -16.12 16 11 C 0.69 14.40 8.57 -86.92 -0.74 13.65 16 12 O -0.60 -15.08 16.34 5.29 0.09 -15.00 16 13 N -0.76 -11.23 5.56 -65.22 -0.36 -11.59 16 14 C 0.15 1.80 5.67 -4.04 -0.02 1.78 16 15 C -0.12 -1.07 5.34 -26.73 -0.14 -1.21 16 16 C -0.61 -3.36 5.81 37.16 0.22 -3.15 16 17 S 2.41 17.83 4.70 -107.50 -0.51 17.32 16 18 O -0.93 -10.07 18.10 -57.83 -1.05 -11.12 16 19 O -0.93 -10.07 18.10 -57.83 -1.05 -11.12 16 20 C -0.57 -2.61 5.93 36.01 0.21 -2.40 16 21 C -0.09 -0.68 5.14 -104.62 -0.54 -1.22 16 22 C -0.10 -0.74 9.70 -39.58 -0.38 -1.12 16 23 C -0.12 -0.77 10.05 -39.58 -0.40 -1.17 16 24 C -0.11 -0.67 10.05 -39.58 -0.40 -1.07 16 25 C -0.12 -0.77 10.05 -39.58 -0.40 -1.17 16 26 C -0.10 -0.74 9.70 -39.58 -0.38 -1.12 16 27 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.39 7.12 8.34 -40.82 -0.34 6.78 16 31 H 0.39 4.58 8.49 -40.82 -0.35 4.23 16 32 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 0.71 8.14 -51.92 -0.42 0.28 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.14 0.45 8.14 -51.92 -0.42 0.03 16 37 H 0.14 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.14 0.28 8.09 -51.92 -0.42 -0.14 16 39 H 0.14 0.28 8.08 -51.92 -0.42 -0.14 16 40 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 41 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 42 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 43 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 44 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 LS Contribution 392.98 15.07 5.92 5.92 Total: -1.00 -40.17 392.98 -11.59 -51.76 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -6.56 Total: 4.05 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -3.42 Total: -4.54 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.00 Total: -53.24 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -2.01 Total: -37.23 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 17.83 SS G_CDS: -0.51 Total: 17.32 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -40.17 -11.59 -51.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426439363.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.194 kcal (2) G-P(sol) polarization free energy of solvation -40.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds