Wall clock time and date at job start Wed Apr 1 2020 00:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38302 * 119.96438 * 2 1 4 4 C 1.38261 * 120.14089 * 179.72254 * 3 2 1 5 5 S 1.76199 * 119.96378 * 180.27983 * 4 3 2 6 6 C 1.81411 * 104.45052 * 270.27402 * 5 4 3 7 7 O 1.42103 * 104.27990 * 26.34745 * 5 4 3 8 8 O 1.42099 * 104.27646 * 154.20746 * 5 4 3 9 9 C 1.38136 * 120.06905 * 0.55812 * 4 3 2 10 10 C 1.38842 * 119.93061 * 359.72053 * 9 4 3 11 11 N 1.39945 * 120.07179 * 179.97438 * 10 9 4 12 12 C 1.34774 * 119.99484 * 24.82154 * 11 10 9 13 13 O 1.21580 * 120.00582 * 5.61963 * 12 11 10 14 14 N 1.34785 * 119.99648 * 185.62254 * 12 11 10 15 15 C 1.46499 * 120.00240 * 179.97438 * 14 12 11 16 16 H 1.09001 * 109.46802 * 325.00215 * 15 14 12 17 17 C 1.53000 * 109.46902 * 84.99842 * 15 14 12 18 18 C 1.50695 * 109.47186 * 205.00121 * 15 14 12 19 19 H 1.07996 * 120.00207 * 359.97438 * 18 15 14 20 20 C 1.37876 * 119.99556 * 180.02562 * 18 15 14 21 21 N 1.31510 * 120.00558 * 359.97438 * 20 18 15 22 22 Si 1.86808 * 119.99640 * 179.97438 * 20 18 15 23 23 H 1.48499 * 109.46917 * 90.00035 * 22 20 18 24 24 H 1.48493 * 109.47070 * 209.99763 * 22 20 18 25 25 H 1.48500 * 109.47277 * 329.99918 * 22 20 18 26 26 C 1.38097 * 119.96764 * 180.27796 * 2 1 3 27 27 C 1.50693 * 120.03373 * 359.97438 * 26 2 1 28 28 H 1.09003 * 109.47379 * 269.72101 * 1 2 3 29 29 H 1.09003 * 109.47629 * 29.72424 * 1 2 3 30 30 H 1.09007 * 109.47144 * 149.72100 * 1 2 3 31 31 H 1.08002 * 119.92962 * 0.02562 * 3 2 1 32 32 H 1.09000 * 109.46501 * 60.00383 * 6 5 4 33 33 H 1.08994 * 109.47085 * 180.02562 * 6 5 4 34 34 H 1.08995 * 109.46793 * 300.00493 * 6 5 4 35 35 H 1.08003 * 120.03091 * 179.70160 * 9 4 3 36 36 H 0.96996 * 119.99978 * 204.81457 * 11 10 9 37 37 H 0.97007 * 119.99521 * 359.97438 * 14 12 11 38 38 H 1.08997 * 109.47069 * 59.99802 * 17 15 14 39 39 H 1.08994 * 109.46941 * 180.02562 * 17 15 14 40 40 H 1.09003 * 109.47047 * 300.00057 * 17 15 14 41 41 H 0.96996 * 120.00110 * 180.02562 * 21 20 18 42 42 H 1.09005 * 109.47018 * 90.00287 * 27 26 2 43 43 H 1.08999 * 109.46963 * 209.99889 * 27 26 2 44 44 H 1.08997 * 109.47332 * 329.99775 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1977 1.1982 0.0000 4 6 3.5803 1.2024 0.0058 5 16 4.4556 2.7316 0.0132 6 6 4.6805 3.1330 -1.7416 7 8 3.5561 3.6474 0.6229 8 8 5.7032 2.4183 0.6169 9 6 4.2761 0.0091 0.0000 10 6 3.5856 -1.1954 -0.0059 11 7 4.2876 -2.4061 -0.0123 12 6 5.5423 -2.4600 0.4768 13 8 6.0271 -1.4842 1.0161 14 7 6.2597 -3.5959 0.3681 15 6 7.6237 -3.6545 0.8993 16 1 8.1073 -2.6868 0.7661 17 6 7.5764 -4.0003 2.3890 18 6 8.4046 -4.7121 0.1627 19 1 7.9321 -5.2837 -0.6224 20 6 9.7221 -4.9505 0.4917 21 7 10.2975 -4.2549 1.4480 22 14 10.6900 -6.2620 -0.4210 23 1 11.3539 -5.6548 -1.6024 24 1 11.7179 -6.8375 0.4830 25 1 9.7676 -7.3361 -0.8691 26 6 2.1967 -1.1963 -0.0058 27 6 1.4433 -2.5014 -0.0116 28 1 -0.3634 -0.0050 1.0277 29 1 -0.3634 0.8924 -0.5095 30 1 -0.3634 -0.8875 -0.5182 31 1 1.6559 2.1325 0.0004 32 1 3.7059 3.2243 -2.2211 33 1 5.2203 4.0755 -1.8324 34 1 5.2507 2.3400 -2.2254 35 1 5.3561 0.0132 -0.0004 36 1 3.8711 -3.2063 -0.3688 37 1 5.8727 -4.3746 -0.0619 38 1 7.0927 -4.9679 2.5222 39 1 8.5912 -4.0435 2.7843 40 1 7.0115 -3.2353 2.9218 41 1 11.2245 -4.4224 1.6792 42 1 1.2613 -2.8113 -1.0406 43 1 2.0326 -3.2634 0.4985 44 1 0.4911 -2.3735 0.5033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435086293.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:19 Heat of formation + Delta-G solvation = -72.046037 kcal Electronic energy + Delta-G solvation = -27667.763374 eV Core-core repulsion = 23712.763647 eV Total energy + Delta-G solvation = -3954.999727 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.62292 -38.84748 -37.05161 -35.89580 -35.38117 -34.49627 -33.63511 -32.51266 -30.84147 -29.66852 -28.75687 -27.50228 -26.73522 -25.27721 -22.92190 -21.92126 -20.83340 -19.88331 -18.94903 -18.31402 -17.69601 -16.51179 -16.22633 -16.10013 -15.82291 -15.37315 -15.23254 -14.87743 -14.72480 -14.30453 -14.02035 -13.51276 -13.42923 -13.34127 -13.19639 -13.06895 -12.83446 -12.46321 -12.41053 -12.26878 -12.02454 -12.02065 -11.93893 -11.79168 -11.51074 -11.11733 -11.08809 -11.03945 -10.84483 -10.64235 -10.39946 -10.26224 -10.23719 -9.44496 -9.08263 -8.88850 -8.59671 -8.16417 -7.79413 -6.14667 -4.24561 0.04033 0.80480 1.30661 2.84450 3.02502 3.22722 3.25081 3.29813 3.31309 3.80183 3.97341 4.10237 4.29545 4.53318 4.62504 4.70890 4.77899 4.82439 4.91782 5.06755 5.17607 5.17841 5.30659 5.39216 5.46120 5.47147 5.55638 5.64071 5.74133 5.82936 6.05806 6.25138 6.34498 6.44450 6.76293 6.95162 7.03824 7.06321 7.16886 7.40326 7.58678 7.78404 7.93930 8.12526 8.65903 8.78341 9.13860 9.43219 10.91311 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013671 B = 0.003080 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.667439 B = 9087.692880 C =10482.373140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.056 4.056 4 C -0.638 4.638 5 S 2.498 3.502 6 C -0.652 4.652 7 O -0.943 6.943 8 O -0.923 6.923 9 C -0.040 4.040 10 C 0.170 3.830 11 N -0.691 5.691 12 C 0.687 3.313 13 O -0.570 6.570 14 N -0.716 5.716 15 C 0.279 3.721 16 H 0.052 0.948 17 C -0.149 4.149 18 C -0.536 4.536 19 H 0.061 0.939 20 C 0.067 3.933 21 N -0.881 5.881 22 Si 0.903 3.097 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.274 1.274 26 C -0.079 4.079 27 C -0.121 4.121 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.137 0.863 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.170 0.830 36 H 0.404 0.596 37 H 0.386 0.614 38 H 0.025 0.975 39 H 0.092 0.908 40 H 0.016 0.984 41 H 0.265 0.735 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.746 8.367 -8.174 22.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.089 4.089 3 C -0.076 4.076 4 C -0.726 4.726 5 S 2.678 3.322 6 C -0.801 4.801 7 O -0.941 6.941 8 O -0.920 6.920 9 C -0.061 4.061 10 C 0.072 3.928 11 N -0.338 5.338 12 C 0.387 3.613 13 O -0.447 6.447 14 N -0.366 5.366 15 C 0.177 3.823 16 H 0.070 0.930 17 C -0.207 4.207 18 C -0.574 4.574 19 H 0.079 0.921 20 C -0.137 4.137 21 N -0.518 5.518 22 Si 0.731 3.269 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.083 4.083 27 C -0.178 4.178 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.155 0.845 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.188 0.812 36 H 0.239 0.761 37 H 0.219 0.781 38 H 0.045 0.955 39 H 0.110 0.890 40 H 0.035 0.965 41 H 0.075 0.925 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.684 9.626 -6.841 22.103 hybrid contribution -0.115 -2.141 -1.410 2.567 sum -18.800 7.484 -8.252 21.853 Atomic orbital electron populations 1.20806 0.90618 1.02916 1.02607 1.19549 0.96007 0.91884 1.01474 1.20626 0.91834 0.98369 0.96805 1.30381 1.05495 1.18838 1.17843 1.05225 0.74870 0.74499 0.77646 1.30239 1.11871 1.12316 1.25688 1.93560 1.65162 1.62295 1.73049 1.93666 1.42386 1.83301 1.72694 1.21363 1.02519 0.89154 0.93059 1.17410 0.89885 0.85876 0.99631 1.42923 1.15418 1.10149 1.65346 1.16257 0.80048 0.85278 0.79700 1.90911 1.69993 1.35353 1.48489 1.45916 1.17698 1.11551 1.61473 1.18741 0.74472 0.98504 0.90551 0.93000 1.22109 1.03042 0.97227 0.98360 1.21173 0.96527 1.20193 1.19529 0.92087 1.24880 0.97379 0.96350 0.95048 1.69901 1.12950 1.39941 1.29004 0.86428 0.79675 0.81358 0.79480 1.20542 1.21045 1.19906 1.19674 0.91557 0.95908 1.01158 1.20850 1.00447 0.93898 1.02603 0.90959 0.91272 0.91221 0.84510 0.85214 0.85186 0.84862 0.81250 0.76079 0.78147 0.95544 0.88997 0.96497 0.92464 0.90632 0.91232 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 9.19 36.00 0.33 -0.49 16 2 C -0.09 -0.95 5.88 -104.65 -0.62 -1.56 16 3 C -0.06 -0.65 9.12 -39.55 -0.36 -1.01 16 4 C -0.64 -8.59 5.65 -39.61 -0.22 -8.82 16 5 S 2.50 30.26 5.80 -107.50 -0.62 29.64 16 6 C -0.65 -4.64 10.80 101.05 1.09 -3.55 16 7 O -0.94 -13.14 17.13 -57.54 -0.99 -14.13 16 8 O -0.92 -15.82 17.12 -57.54 -0.99 -16.81 16 9 C -0.04 -0.65 8.14 -39.40 -0.32 -0.97 16 10 C 0.17 2.53 6.41 -83.69 -0.54 2.00 16 11 N -0.69 -10.31 4.98 -14.22 -0.07 -10.38 16 12 C 0.69 13.71 8.33 -86.91 -0.72 12.98 16 13 O -0.57 -13.82 13.17 5.29 0.07 -13.75 16 14 N -0.72 -14.49 5.07 -59.81 -0.30 -14.79 16 15 C 0.28 7.03 2.56 -69.09 -0.18 6.85 16 16 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 17 C -0.15 -3.71 9.26 37.16 0.34 -3.37 16 18 C -0.54 -13.94 8.73 -34.44 -0.30 -14.24 16 19 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 20 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 21 N -0.88 -24.69 11.32 55.43 0.63 -24.06 16 22 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 26 C -0.08 -0.93 5.90 -104.43 -0.62 -1.55 16 27 C -0.12 -1.01 8.63 36.00 0.31 -0.70 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 30 H 0.07 0.41 6.70 -51.93 -0.35 0.07 16 31 H 0.14 1.28 7.57 -52.49 -0.40 0.88 16 32 H 0.13 0.63 8.14 -51.92 -0.42 0.20 16 33 H 0.13 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.13 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.17 3.24 5.30 -52.48 -0.28 2.96 16 36 H 0.40 4.50 7.42 -40.82 -0.30 4.20 16 37 H 0.39 6.55 8.56 -40.82 -0.35 6.20 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.59 6.99 -51.93 -0.36 0.23 16 44 H 0.08 0.53 6.70 -51.93 -0.35 0.19 16 LS Contribution 373.36 15.07 5.63 5.63 Total: -1.00 -36.91 373.36 -9.57 -46.48 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -6.01 Total: 9.56 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -1.89 Total: -12.74 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.25 Total: -49.23 kcal Atomic # 8 Polarization: -42.78 SS G_CDS: -1.90 Total: -44.68 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 30.26 SS G_CDS: -0.62 Total: 29.64 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.91 -9.57 -46.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435086293.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.568 kcal (2) G-P(sol) polarization free energy of solvation -36.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds