Wall clock time and date at job start Wed Apr 1 2020 00:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38302 * 119.96438 * 2 1 4 4 C 1.38261 * 120.14089 * 179.72254 * 3 2 1 5 5 S 1.76199 * 119.96378 * 180.27983 * 4 3 2 6 6 C 1.81411 * 104.45052 * 270.27402 * 5 4 3 7 7 O 1.42103 * 104.27990 * 26.34745 * 5 4 3 8 8 O 1.42099 * 104.27646 * 154.20746 * 5 4 3 9 9 C 1.38136 * 120.06905 * 0.55812 * 4 3 2 10 10 C 1.38842 * 119.93061 * 359.72053 * 9 4 3 11 11 N 1.39945 * 120.07179 * 179.97438 * 10 9 4 12 12 C 1.34774 * 119.99484 * 24.82154 * 11 10 9 13 13 O 1.21580 * 120.00582 * 5.61963 * 12 11 10 14 14 N 1.34785 * 119.99648 * 185.62254 * 12 11 10 15 15 C 1.46499 * 120.00240 * 179.97438 * 14 12 11 16 16 H 1.09001 * 109.46802 * 325.00215 * 15 14 12 17 17 C 1.53000 * 109.46902 * 84.99842 * 15 14 12 18 18 C 1.50695 * 109.47186 * 205.00121 * 15 14 12 19 19 H 1.07996 * 120.00207 * 359.97438 * 18 15 14 20 20 C 1.37876 * 119.99556 * 180.02562 * 18 15 14 21 21 N 1.31510 * 120.00558 * 359.97438 * 20 18 15 22 22 Si 1.86808 * 119.99640 * 179.97438 * 20 18 15 23 23 H 1.48499 * 109.46917 * 90.00035 * 22 20 18 24 24 H 1.48493 * 109.47070 * 209.99763 * 22 20 18 25 25 H 1.48500 * 109.47277 * 329.99918 * 22 20 18 26 26 C 1.38097 * 119.96764 * 180.27796 * 2 1 3 27 27 C 1.50693 * 120.03373 * 359.97438 * 26 2 1 28 28 H 1.09003 * 109.47379 * 269.72101 * 1 2 3 29 29 H 1.09003 * 109.47629 * 29.72424 * 1 2 3 30 30 H 1.09007 * 109.47144 * 149.72100 * 1 2 3 31 31 H 1.08002 * 119.92962 * 0.02562 * 3 2 1 32 32 H 1.09000 * 109.46501 * 60.00383 * 6 5 4 33 33 H 1.08994 * 109.47085 * 180.02562 * 6 5 4 34 34 H 1.08995 * 109.46793 * 300.00493 * 6 5 4 35 35 H 1.08003 * 120.03091 * 179.70160 * 9 4 3 36 36 H 0.96996 * 119.99978 * 204.81457 * 11 10 9 37 37 H 0.97007 * 119.99521 * 359.97438 * 14 12 11 38 38 H 1.08997 * 109.47069 * 59.99802 * 17 15 14 39 39 H 1.08994 * 109.46941 * 180.02562 * 17 15 14 40 40 H 1.09003 * 109.47047 * 300.00057 * 17 15 14 41 41 H 0.96996 * 120.00110 * 180.02562 * 21 20 18 42 42 H 1.09005 * 109.47018 * 90.00287 * 27 26 2 43 43 H 1.08999 * 109.46963 * 209.99889 * 27 26 2 44 44 H 1.08997 * 109.47332 * 329.99775 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1977 1.1982 0.0000 4 6 3.5803 1.2024 0.0058 5 16 4.4556 2.7316 0.0132 6 6 4.6805 3.1330 -1.7416 7 8 3.5561 3.6474 0.6229 8 8 5.7032 2.4183 0.6169 9 6 4.2761 0.0091 0.0000 10 6 3.5856 -1.1954 -0.0059 11 7 4.2876 -2.4061 -0.0123 12 6 5.5423 -2.4600 0.4768 13 8 6.0271 -1.4842 1.0161 14 7 6.2597 -3.5959 0.3681 15 6 7.6237 -3.6545 0.8993 16 1 8.1073 -2.6868 0.7661 17 6 7.5764 -4.0003 2.3890 18 6 8.4046 -4.7121 0.1627 19 1 7.9321 -5.2837 -0.6224 20 6 9.7221 -4.9505 0.4917 21 7 10.2975 -4.2549 1.4480 22 14 10.6900 -6.2620 -0.4210 23 1 11.3539 -5.6548 -1.6024 24 1 11.7179 -6.8375 0.4830 25 1 9.7676 -7.3361 -0.8691 26 6 2.1967 -1.1963 -0.0058 27 6 1.4433 -2.5014 -0.0116 28 1 -0.3634 -0.0050 1.0277 29 1 -0.3634 0.8924 -0.5095 30 1 -0.3634 -0.8875 -0.5182 31 1 1.6559 2.1325 0.0004 32 1 3.7059 3.2243 -2.2211 33 1 5.2203 4.0755 -1.8324 34 1 5.2507 2.3400 -2.2254 35 1 5.3561 0.0132 -0.0004 36 1 3.8711 -3.2063 -0.3688 37 1 5.8727 -4.3746 -0.0619 38 1 7.0927 -4.9679 2.5222 39 1 8.5912 -4.0435 2.7843 40 1 7.0115 -3.2353 2.9218 41 1 11.2245 -4.4224 1.6792 42 1 1.2613 -2.8113 -1.0406 43 1 2.0326 -3.2634 0.4985 44 1 0.4911 -2.3735 0.5033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435086293.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:18 Heat of formation + Delta-G solvation = -100.747587 kcal Electronic energy + Delta-G solvation = -27669.007967 eV Core-core repulsion = 23712.763647 eV Total energy + Delta-G solvation = -3956.244320 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.89382 -40.14923 -38.14021 -37.05957 -36.97770 -35.99179 -34.60739 -34.33905 -32.05984 -30.41637 -30.32650 -28.47854 -27.52767 -27.35060 -24.33206 -22.86719 -22.41096 -21.48248 -20.16517 -19.63450 -18.88652 -18.01257 -17.47457 -17.22464 -17.13721 -16.72874 -16.48607 -16.18555 -15.98489 -15.65913 -15.18669 -15.06222 -14.42856 -14.21849 -14.05696 -13.98084 -13.85751 -13.64253 -13.62423 -13.26492 -13.17875 -13.14391 -13.04177 -12.96057 -12.89983 -12.76197 -12.69810 -12.43530 -12.28103 -12.12450 -12.01299 -11.76728 -11.46046 -11.12588 -11.05782 -10.61879 -9.91856 -9.77435 -9.04229 -8.17879 -6.36056 -0.85663 -0.19156 0.25949 1.44971 1.46419 1.56569 1.65490 1.90401 2.02382 2.41213 2.51490 3.03621 3.12749 3.17495 3.38613 3.73320 3.85156 4.05472 4.07124 4.12370 4.31223 4.34519 4.52258 4.63741 4.72328 4.76806 4.83494 4.89721 4.90267 4.90741 4.99965 5.07167 5.13771 5.18606 5.22368 5.36253 5.42907 5.49063 5.57081 5.62578 5.81776 5.95596 6.06834 6.19459 6.71567 7.15463 7.32571 7.60457 8.88834 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013671 B = 0.003080 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.667439 B = 9087.692880 C =10482.373140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.086 4.086 3 C -0.055 4.055 4 C -0.644 4.644 5 S 2.494 3.506 6 C -0.619 4.619 7 O -0.968 6.968 8 O -0.990 6.990 9 C -0.075 4.075 10 C 0.140 3.860 11 N -0.669 5.669 12 C 0.687 3.313 13 O -0.619 6.619 14 N -0.709 5.709 15 C 0.287 3.713 16 H -0.001 1.001 17 C -0.134 4.134 18 C -0.546 4.546 19 H 0.077 0.923 20 C 0.013 3.987 21 N -0.918 5.918 22 Si 0.976 3.024 23 H -0.278 1.278 24 H -0.285 1.285 25 H -0.257 1.257 26 C -0.070 4.070 27 C -0.122 4.122 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.163 0.837 32 H 0.166 0.834 33 H 0.156 0.844 34 H 0.142 0.858 35 H 0.129 0.871 36 H 0.423 0.577 37 H 0.405 0.595 38 H 0.043 0.957 39 H 0.068 0.932 40 H 0.007 0.993 41 H 0.266 0.734 42 H 0.101 0.899 43 H 0.066 0.934 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.213 7.375 -10.747 26.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.088 4.088 3 C -0.075 4.075 4 C -0.731 4.731 5 S 2.679 3.321 6 C -0.773 4.773 7 O -0.965 6.965 8 O -0.988 6.988 9 C -0.097 4.097 10 C 0.043 3.957 11 N -0.318 5.318 12 C 0.387 3.613 13 O -0.500 6.500 14 N -0.362 5.362 15 C 0.184 3.816 16 H 0.017 0.983 17 C -0.193 4.193 18 C -0.584 4.584 19 H 0.095 0.905 20 C -0.187 4.187 21 N -0.556 5.556 22 Si 0.800 3.200 23 H -0.204 1.204 24 H -0.211 1.211 25 H -0.181 1.181 26 C -0.073 4.073 27 C -0.179 4.179 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.180 0.820 32 H 0.184 0.816 33 H 0.174 0.826 34 H 0.160 0.840 35 H 0.147 0.853 36 H 0.262 0.738 37 H 0.241 0.759 38 H 0.062 0.938 39 H 0.086 0.914 40 H 0.026 0.974 41 H 0.075 0.925 42 H 0.120 0.880 43 H 0.085 0.915 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -22.245 8.594 -9.405 25.635 hybrid contribution 0.823 -1.682 -0.678 1.991 sum -21.422 6.912 -10.083 24.665 Atomic orbital electron populations 1.20933 0.87361 1.04936 1.03661 1.20088 0.98225 0.91022 0.99433 1.21072 0.91028 1.00096 0.95277 1.30402 1.06537 1.18095 1.18053 1.05085 0.73208 0.73663 0.80161 1.29990 1.14629 1.13708 1.19018 1.93513 1.65139 1.62253 1.75602 1.93591 1.44839 1.84065 1.76272 1.21101 1.00990 0.91272 0.96336 1.17665 0.91316 0.84963 1.01779 1.42468 1.13509 1.11347 1.64498 1.16360 0.81312 0.84220 0.79392 1.90907 1.71553 1.36962 1.50540 1.45445 1.16300 1.12627 1.61836 1.18291 0.76584 0.95805 0.90968 0.98320 1.21927 1.01524 0.97699 0.98196 1.21504 0.96967 1.20109 1.19809 0.90476 1.25836 0.98526 0.98536 0.95777 1.70067 1.13247 1.41665 1.30649 0.85287 0.78112 0.78694 0.77865 1.20386 1.21086 1.18110 1.20078 0.90097 0.98182 0.98988 1.20994 1.00703 0.91663 1.04500 0.90165 0.89458 0.89179 0.81973 0.81604 0.82618 0.83992 0.85316 0.73757 0.75944 0.93822 0.91377 0.97392 0.92512 0.88042 0.91544 0.88427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 9.19 71.23 0.65 -0.47 16 2 C -0.09 -1.62 5.88 -19.89 -0.12 -1.74 16 3 C -0.06 -1.19 9.12 22.29 0.20 -0.98 16 4 C -0.64 -17.77 5.65 22.25 0.13 -17.65 16 5 S 2.49 62.96 5.80 -56.49 -0.33 62.63 16 6 C -0.62 -7.50 10.80 113.37 1.22 -6.27 16 7 O -0.97 -27.24 17.13 -127.65 -2.19 -29.42 16 8 O -0.99 -37.59 17.12 -127.65 -2.19 -39.77 16 9 C -0.08 -2.62 8.14 22.39 0.18 -2.44 16 10 C 0.14 4.21 6.41 38.15 0.24 4.45 16 11 N -0.67 -20.22 4.98 -317.18 -1.58 -21.80 16 12 C 0.69 28.82 8.33 179.05 1.49 30.31 16 13 O -0.62 -32.63 13.17 -3.97 -0.05 -32.68 16 14 N -0.71 -29.58 5.07 -461.42 -2.34 -31.92 16 15 C 0.29 15.14 2.56 44.24 0.11 15.25 16 16 H 0.00 -0.07 7.58 -2.39 -0.02 -0.09 16 17 C -0.13 -7.01 9.26 71.98 0.67 -6.35 16 18 C -0.55 -28.71 8.73 25.60 0.22 -28.49 16 19 H 0.08 3.72 7.74 -2.91 -0.02 3.70 16 20 C 0.01 0.72 5.30 84.66 0.45 1.17 16 21 N -0.92 -53.27 11.32 21.45 0.24 -53.03 16 22 Si 0.98 41.72 29.54 68.60 2.03 43.75 16 23 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 24 H -0.29 -12.12 7.11 99.48 0.71 -11.42 16 25 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 26 C -0.07 -1.51 5.90 -19.74 -0.12 -1.62 16 27 C -0.12 -1.59 8.63 71.23 0.61 -0.97 16 28 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.09 0.61 8.08 -2.39 -0.02 0.59 16 30 H 0.09 0.58 6.70 -2.38 -0.02 0.56 16 31 H 0.16 2.59 7.57 -2.91 -0.02 2.57 16 32 H 0.17 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.16 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.13 5.55 5.30 -2.91 -0.02 5.53 16 36 H 0.42 8.96 7.42 -92.71 -0.69 8.28 16 37 H 0.41 13.57 8.56 -92.70 -0.79 12.78 16 38 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.07 3.88 6.07 -2.39 -0.01 3.86 16 40 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 42 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 43 H 0.07 0.94 6.99 -2.39 -0.02 0.92 16 44 H 0.10 0.91 6.70 -2.39 -0.02 0.89 16 Total: -1.00 -88.04 373.36 -0.87 -88.91 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: -0.43 Total: 29.14 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: 5.96 Total: -15.80 kcal Atomic # 7 Polarization: -103.07 SS G_CDS: -3.68 Total: -106.75 kcal Atomic # 8 Polarization: -97.45 SS G_CDS: -4.42 Total: -101.88 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Atomic # 16 Polarization: 62.96 SS G_CDS: -0.33 Total: 62.63 kcal Total: -88.04 -0.87 -88.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435086293.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.834 kcal (2) G-P(sol) polarization free energy of solvation -88.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds