Wall clock time and date at job start Wed Apr 1 2020 00:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38305 * 119.96591 * 2 1 4 4 C 1.38255 * 120.14409 * 179.97438 * 3 2 1 5 5 S 1.76200 * 119.96916 * 179.97438 * 4 3 2 6 6 C 1.81391 * 104.45112 * 270.02641 * 5 4 3 7 7 O 1.42100 * 104.27083 * 26.09593 * 5 4 3 8 8 O 1.42097 * 104.27706 * 153.95121 * 5 4 3 9 9 C 1.38140 * 120.06876 * 0.02562 * 4 3 2 10 10 C 1.38845 * 119.93009 * 359.97438 * 9 4 3 11 11 N 1.39942 * 120.07587 * 179.97438 * 10 9 4 12 12 C 1.34784 * 119.99431 * 335.17937 * 11 10 9 13 13 O 1.21584 * 119.99749 * 354.37409 * 12 11 10 14 14 N 1.34770 * 119.99840 * 174.37460 * 12 11 10 15 15 C 1.46507 * 120.00013 * 180.27366 * 14 12 11 16 16 H 1.09005 * 109.46668 * 34.72543 * 15 14 12 17 17 C 1.52996 * 109.47356 * 274.72637 * 15 14 12 18 18 C 1.50699 * 109.47244 * 154.72274 * 15 14 12 19 19 H 1.08000 * 119.99596 * 25.04016 * 18 15 14 20 20 C 1.37878 * 120.00223 * 205.04003 * 18 15 14 21 21 N 1.31510 * 120.00022 * 185.00779 * 20 18 15 22 22 Si 1.86793 * 119.99927 * 5.00947 * 20 18 15 23 23 H 1.48497 * 109.47431 * 94.96816 * 22 20 18 24 24 H 1.48497 * 109.47218 * 214.96867 * 22 20 18 25 25 H 1.48503 * 109.47260 * 334.96925 * 22 20 18 26 26 C 1.38094 * 119.96703 * 180.25685 * 2 1 3 27 27 C 1.50702 * 120.03581 * 0.02562 * 26 2 1 28 28 H 1.09007 * 109.47324 * 90.00078 * 1 2 3 29 29 H 1.09003 * 109.47249 * 209.99570 * 1 2 3 30 30 H 1.08996 * 109.47330 * 329.99927 * 1 2 3 31 31 H 1.08002 * 119.92379 * 0.02562 * 3 2 1 32 32 H 1.09006 * 109.47507 * 59.99795 * 6 5 4 33 33 H 1.08996 * 109.47327 * 179.97438 * 6 5 4 34 34 H 1.09003 * 109.46976 * 299.99925 * 6 5 4 35 35 H 1.07999 * 120.03970 * 179.97438 * 9 4 3 36 36 H 0.96994 * 120.00928 * 155.17684 * 11 10 9 37 37 H 0.97002 * 120.00717 * 0.02562 * 14 12 11 38 38 H 1.08998 * 109.47302 * 305.00071 * 17 15 14 39 39 H 1.09003 * 109.46868 * 64.99554 * 17 15 14 40 40 H 1.08996 * 109.47285 * 184.99872 * 17 15 14 41 41 H 0.97002 * 120.00495 * 180.02562 * 21 20 18 42 42 H 1.09002 * 109.47515 * 270.21563 * 27 26 2 43 43 H 1.09007 * 109.46652 * 30.21609 * 27 26 2 44 44 H 1.08997 * 109.46881 * 150.21376 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5803 1.2025 0.0005 5 16 4.4557 2.7316 -0.0002 6 6 4.6806 3.1237 -1.7568 7 8 3.5562 3.6505 0.6047 8 8 5.7033 2.4214 0.6053 9 6 4.2762 0.0091 0.0005 10 6 3.5857 -1.1954 0.0005 11 7 4.2875 -2.4061 0.0000 12 6 5.5419 -2.4576 -0.4905 13 8 6.0261 -1.4788 -1.0251 14 7 6.2592 -3.5939 -0.3884 15 6 7.6248 -3.6481 -0.9162 16 1 8.1061 -2.6797 -0.7787 17 6 7.5823 -3.9892 -2.4071 18 6 8.4061 -4.7063 -0.1808 19 1 7.8897 -5.5321 0.2859 20 6 9.7800 -4.6203 -0.1038 21 7 10.4696 -5.5926 0.4516 22 14 10.6618 -3.1227 -0.7884 23 1 10.8931 -2.1425 0.3029 24 1 11.9656 -3.5370 -1.3661 25 1 9.8279 -2.4978 -1.8464 26 6 2.1967 -1.1963 -0.0054 27 6 1.4433 -2.5015 -0.0118 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.6560 2.1325 0.0004 32 1 3.7061 3.2125 -2.2370 33 1 5.2197 4.0662 -1.8527 34 1 5.2508 2.3281 -2.2366 35 1 5.3561 0.0130 0.0005 36 1 3.8714 -3.2082 0.3526 37 1 5.8727 -4.3750 0.0377 38 1 7.0232 -4.9136 -2.5525 39 1 7.0946 -3.1803 -2.9511 40 1 8.5986 -4.1169 -2.7797 41 1 11.4362 -5.5320 0.5062 42 1 1.2578 -2.8191 1.0143 43 1 0.4927 -2.3696 -0.5288 44 1 2.0343 -3.2596 -0.5256 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435086294.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:24 Heat of formation + Delta-G solvation = -100.903898 kcal Electronic energy + Delta-G solvation = -27811.236462 eV Core-core repulsion = 23854.985364 eV Total energy + Delta-G solvation = -3956.251098 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.92091 -40.18256 -38.16142 -37.10823 -37.00716 -35.99369 -34.61007 -34.38527 -32.37659 -30.80607 -30.35562 -28.50351 -27.53872 -27.29261 -24.31256 -22.87905 -22.25751 -21.53989 -20.26753 -19.73192 -18.93814 -18.32379 -17.61929 -17.23743 -17.15833 -16.72425 -16.49756 -16.20356 -15.98761 -15.69904 -15.21957 -15.04249 -14.61145 -14.29772 -14.22357 -14.07824 -14.00736 -13.69066 -13.62391 -13.47733 -13.30517 -13.17560 -13.09747 -13.06271 -12.99783 -12.79979 -12.73872 -12.45163 -12.36209 -12.13312 -11.82878 -11.72085 -11.48726 -11.24792 -11.07871 -10.83610 -9.98601 -9.79200 -9.06372 -8.39516 -6.45050 -0.87799 -0.19592 0.25174 1.28642 1.36059 1.46325 1.60754 1.88199 1.98752 2.27542 2.48396 2.96775 2.99573 3.15262 3.33580 3.72205 3.84119 4.04158 4.05307 4.10011 4.29756 4.32910 4.42000 4.55532 4.62652 4.72377 4.75591 4.81414 4.83215 4.89983 4.90099 4.97851 5.08058 5.13351 5.17106 5.20570 5.33762 5.42555 5.45402 5.48630 5.65131 5.90181 5.94637 6.24734 6.58925 7.06426 7.21199 7.50962 8.75366 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012582 B = 0.003551 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.939210 B = 7884.300361 C = 9556.746434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.086 4.086 3 C -0.054 4.054 4 C -0.645 4.645 5 S 2.502 3.498 6 C -0.626 4.626 7 O -0.964 6.964 8 O -0.989 6.989 9 C -0.075 4.075 10 C 0.140 3.860 11 N -0.671 5.671 12 C 0.692 3.308 13 O -0.616 6.616 14 N -0.709 5.709 15 C 0.253 3.747 16 H 0.029 0.971 17 C -0.142 4.142 18 C -0.528 4.528 19 H 0.059 0.941 20 C 0.035 3.965 21 N -0.930 5.930 22 Si 0.919 3.081 23 H -0.280 1.280 24 H -0.274 1.274 25 H -0.247 1.247 26 C -0.069 4.069 27 C -0.123 4.123 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.162 0.838 32 H 0.163 0.837 33 H 0.156 0.844 34 H 0.136 0.864 35 H 0.132 0.868 36 H 0.423 0.577 37 H 0.405 0.595 38 H 0.060 0.940 39 H 0.036 0.964 40 H 0.049 0.951 41 H 0.270 0.730 42 H 0.094 0.906 43 H 0.100 0.900 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.131 12.592 -5.186 27.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.088 4.088 3 C -0.073 4.073 4 C -0.732 4.732 5 S 2.686 3.314 6 C -0.779 4.779 7 O -0.961 6.961 8 O -0.986 6.986 9 C -0.096 4.096 10 C 0.043 3.957 11 N -0.320 5.320 12 C 0.393 3.607 13 O -0.497 6.497 14 N -0.362 5.362 15 C 0.149 3.851 16 H 0.047 0.953 17 C -0.201 4.201 18 C -0.566 4.566 19 H 0.077 0.923 20 C -0.166 4.166 21 N -0.568 5.568 22 Si 0.744 3.256 23 H -0.206 1.206 24 H -0.199 1.199 25 H -0.170 1.170 26 C -0.072 4.072 27 C -0.179 4.179 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.180 0.820 32 H 0.181 0.819 33 H 0.174 0.826 34 H 0.154 0.846 35 H 0.150 0.850 36 H 0.262 0.738 37 H 0.241 0.759 38 H 0.079 0.921 39 H 0.055 0.945 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.112 0.888 43 H 0.119 0.881 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -23.150 13.730 -4.865 27.351 hybrid contribution 0.819 -1.016 -0.123 1.311 sum -22.331 12.714 -4.989 26.176 Atomic orbital electron populations 1.20933 0.87424 1.04579 1.04012 1.20084 0.98205 0.91040 0.99449 1.21070 0.91061 1.00090 0.95119 1.30389 1.06521 1.18092 1.18181 1.04851 0.73221 0.73651 0.79686 1.30023 1.14439 1.13533 1.19945 1.93520 1.65046 1.62073 1.75491 1.93556 1.44808 1.84213 1.76016 1.21104 1.01098 0.91156 0.96267 1.17640 0.91276 0.84931 1.01849 1.42494 1.13754 1.11257 1.64478 1.16244 0.81143 0.84064 0.79292 1.90807 1.71534 1.36371 1.50981 1.45412 1.15815 1.12809 1.62135 1.18810 0.78670 0.96064 0.91589 0.95290 1.22176 1.00897 1.00250 0.96791 1.21174 0.91904 1.08598 1.34957 0.92312 1.25510 0.98174 0.98158 0.94753 1.69969 1.07819 1.33572 1.45470 0.86166 0.78918 0.80516 0.80026 1.20617 1.19930 1.17003 1.20081 0.90186 0.98106 0.98816 1.20998 1.00914 0.91798 1.04230 0.89228 0.89587 0.90017 0.82002 0.81887 0.82585 0.84567 0.85026 0.73842 0.75922 0.92122 0.94497 0.93174 0.92029 0.88755 0.88146 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 9.18 71.23 0.65 -0.39 16 2 C -0.09 -1.53 5.88 -19.88 -0.12 -1.65 16 3 C -0.05 -1.09 9.12 22.29 0.20 -0.89 16 4 C -0.64 -16.79 5.65 22.25 0.13 -16.66 16 5 S 2.50 59.57 5.80 -56.49 -0.33 59.25 16 6 C -0.63 -8.35 10.79 113.37 1.22 -7.12 16 7 O -0.96 -25.29 17.12 -127.65 -2.19 -27.48 16 8 O -0.99 -34.37 17.12 -127.65 -2.19 -36.55 16 9 C -0.07 -2.45 8.14 22.39 0.18 -2.26 16 10 C 0.14 3.97 6.41 38.15 0.24 4.22 16 11 N -0.67 -19.05 4.98 -317.17 -1.58 -20.63 16 12 C 0.69 26.24 8.34 179.05 1.49 27.73 16 13 O -0.62 -27.81 13.17 -3.98 -0.05 -27.87 16 14 N -0.71 -27.40 5.07 -461.41 -2.34 -29.74 16 15 C 0.25 11.81 2.09 44.24 0.09 11.90 16 16 H 0.03 1.51 5.15 -2.38 -0.01 1.49 16 17 C -0.14 -5.99 9.05 71.98 0.65 -5.34 16 18 C -0.53 -28.23 9.06 25.60 0.23 -28.00 16 19 H 0.06 3.31 8.02 -2.91 -0.02 3.29 16 20 C 0.03 1.93 5.47 84.66 0.46 2.40 16 21 N -0.93 -55.28 13.96 21.45 0.30 -54.98 16 22 Si 0.92 44.39 26.34 68.60 1.81 46.19 16 23 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 24 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 25 H -0.25 -11.49 5.96 99.48 0.59 -10.89 16 26 C -0.07 -1.39 5.90 -19.74 -0.12 -1.50 16 27 C -0.12 -1.50 8.62 71.24 0.61 -0.88 16 28 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 29 H 0.09 0.57 6.72 -2.39 -0.02 0.56 16 30 H 0.08 0.62 8.08 -2.39 -0.02 0.60 16 31 H 0.16 2.42 7.56 -2.91 -0.02 2.39 16 32 H 0.16 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.16 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.14 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.13 5.30 5.30 -2.91 -0.02 5.29 16 36 H 0.42 8.67 7.43 -92.71 -0.69 7.98 16 37 H 0.41 13.30 8.58 -92.71 -0.80 12.50 16 38 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.05 2.14 6.89 -2.39 -0.02 2.12 16 41 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 42 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.10 0.79 6.72 -2.38 -0.02 0.78 16 44 H 0.07 0.88 6.99 -2.39 -0.02 0.86 16 Total: -1.00 -83.12 370.21 -1.16 -84.28 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: -0.54 Total: 25.99 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: 5.95 Total: -18.46 kcal Atomic # 7 Polarization: -101.73 SS G_CDS: -3.62 Total: -105.35 kcal Atomic # 8 Polarization: -87.47 SS G_CDS: -4.42 Total: -91.90 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.81 Total: 46.19 kcal Atomic # 16 Polarization: 59.57 SS G_CDS: -0.33 Total: 59.25 kcal Total: -83.12 -1.16 -84.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435086294.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.628 kcal (2) G-P(sol) polarization free energy of solvation -83.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds