Wall clock time and date at job start Wed Apr 1 2020 00:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38386 * 119.92681 * 2 1 4 4 C 1.38334 * 120.29317 * 179.76646 * 3 2 1 5 5 C 1.37981 * 120.14636 * 0.51801 * 4 3 2 6 6 S 1.76200 * 120.07551 * 179.76844 * 5 4 3 7 7 N 1.65597 * 107.22113 * 114.72190 * 6 5 4 8 8 O 1.42100 * 106.40337 * 1.17895 * 6 5 4 9 9 O 1.42104 * 106.39700 * 228.26056 * 6 5 4 10 10 C 1.39559 * 119.85018 * 359.48552 * 5 4 3 11 11 C 1.47847 * 120.14616 * 180.27572 * 10 5 4 12 12 O 1.21555 * 119.99643 * 0.02562 * 11 10 5 13 13 N 1.34768 * 119.99955 * 180.02562 * 11 10 5 14 14 C 1.46506 * 119.99783 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47098 * 180.02562 * 14 13 11 16 16 C 1.53010 * 109.46708 * 299.99366 * 15 14 13 17 17 C 1.52998 * 109.47596 * 59.99569 * 15 14 13 18 18 C 1.50704 * 109.47171 * 180.02562 * 15 14 13 19 19 H 1.08007 * 119.99559 * 359.97438 * 18 15 14 20 20 C 1.37872 * 120.00165 * 179.97438 * 18 15 14 21 21 N 1.31512 * 119.99927 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 120.00105 * 179.97438 * 20 18 15 23 23 H 1.48499 * 109.46956 * 60.00574 * 22 20 18 24 24 H 1.48501 * 109.46922 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47024 * 300.00423 * 22 20 18 26 26 C 1.37939 * 119.93154 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.46821 * 269.96968 * 1 2 3 28 28 H 1.08995 * 109.47674 * 29.97397 * 1 2 3 29 29 H 1.09007 * 109.46895 * 149.97535 * 1 2 3 30 30 H 1.08000 * 119.85201 * 0.03009 * 3 2 1 31 31 H 1.08001 * 119.93188 * 180.25989 * 4 3 2 32 32 H 0.97001 * 120.00224 * 240.00401 * 7 6 5 33 33 H 0.97005 * 120.00050 * 59.72170 * 7 6 5 34 34 H 0.96992 * 120.00478 * 359.97438 * 13 11 10 35 35 H 1.08998 * 109.46955 * 299.99338 * 14 13 11 36 36 H 1.08998 * 109.47319 * 59.99347 * 14 13 11 37 37 H 1.09002 * 109.46854 * 60.00611 * 16 15 14 38 38 H 1.08999 * 109.47048 * 180.02562 * 16 15 14 39 39 H 1.08998 * 109.47002 * 300.00481 * 16 15 14 40 40 H 1.08996 * 109.46962 * 60.00033 * 17 15 14 41 41 H 1.08999 * 109.47327 * 180.02562 * 17 15 14 42 42 H 1.09004 * 109.46869 * 300.00432 * 17 15 14 43 43 H 0.97000 * 120.00442 * 179.97438 * 21 20 18 44 44 H 1.08003 * 120.06819 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2082 0.0049 5 6 4.2813 0.0195 -0.0010 6 16 6.0432 0.0330 -0.0010 7 7 6.5385 -0.6319 1.4325 8 8 6.4341 1.3987 0.0338 9 8 6.4513 -0.8664 -1.0227 10 6 3.5912 -1.1935 -0.0011 11 6 4.3353 -2.4711 -0.0012 12 8 5.5508 -2.4664 -0.0008 13 7 3.6659 -3.6408 -0.0018 14 6 4.4033 -4.9067 -0.0013 15 6 3.4135 -6.0735 -0.0027 16 6 2.5324 -5.9962 1.2458 17 6 2.5349 -5.9955 -1.2528 18 6 4.1721 -7.3757 -0.0017 19 1 5.2521 -7.3715 -0.0006 20 6 3.4873 -8.5724 -0.0021 21 7 2.1722 -8.5774 -0.0030 22 14 4.4275 -10.1865 -0.0015 23 1 5.2807 -10.2619 1.2116 24 1 3.4668 -11.3189 -0.0028 25 1 5.2824 -10.2618 -1.2134 26 6 2.1952 -1.1954 -0.0005 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3634 0.8901 -0.5134 29 1 -0.3633 -0.8898 -0.5143 30 1 1.6538 2.1326 0.0005 31 1 4.1136 2.1476 0.0091 32 1 7.0793 -0.1117 2.0472 33 1 6.2845 -1.5402 1.6593 34 1 2.6960 -3.6446 -0.0017 35 1 5.0307 -4.9620 -0.8909 36 1 5.0297 -4.9621 0.8890 37 1 1.9837 -5.0543 1.2454 38 1 1.8275 -6.8276 1.2450 39 1 3.1584 -6.0517 2.1363 40 1 3.1626 -6.0505 -2.1421 41 1 1.8295 -6.8264 -1.2535 42 1 1.9863 -5.0536 -1.2531 43 1 1.6904 -9.4193 -0.0037 44 1 1.6552 -2.1307 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457993421.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:15 Heat of formation + Delta-G solvation = -83.497488 kcal Electronic energy + Delta-G solvation = -28377.743185 eV Core-core repulsion = 24422.246886 eV Total energy + Delta-G solvation = -3955.496299 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 2.92 seconds Orbital eigenvalues (eV) -40.44459 -38.74626 -37.00505 -36.36602 -35.47056 -33.69239 -33.25117 -32.84604 -31.77694 -30.60732 -27.56429 -25.95263 -25.81758 -25.23231 -23.76416 -22.25662 -20.39709 -19.52439 -18.90812 -18.31506 -17.32024 -17.10644 -16.49858 -16.07565 -15.85523 -15.23202 -14.97767 -14.85590 -14.70383 -14.52695 -14.33472 -14.07650 -13.39605 -13.02856 -12.99448 -12.66975 -12.47989 -12.36334 -12.29132 -12.02665 -11.86151 -11.77394 -11.52965 -11.35858 -11.26679 -10.91494 -10.88016 -10.76785 -10.46970 -10.25932 -10.17935 -9.79218 -9.71821 -9.39976 -9.38650 -9.31837 -8.87861 -8.58732 -8.40731 -6.07584 -4.17799 0.25607 0.71827 0.82022 2.66995 3.27571 3.31537 3.31932 3.38256 3.43172 3.54214 3.88977 4.30597 4.36373 4.39820 4.53088 4.70745 4.99456 5.11640 5.19591 5.21438 5.24383 5.29037 5.53574 5.61593 5.71961 5.78090 6.07324 6.10606 6.20563 6.23379 6.39871 6.46672 6.63970 6.71326 6.80270 6.84405 6.93161 7.25424 7.38101 7.46879 7.62710 7.76116 7.92812 8.05067 8.28217 8.38693 8.82372 9.48445 10.93914 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015125 B = 0.003388 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.739086 B = 8263.625117 C = 9746.281526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.039 4.039 3 C -0.125 4.125 4 C -0.025 4.025 5 C -0.641 4.641 6 S 2.714 3.286 7 N -1.234 6.234 8 O -0.985 6.985 9 O -0.925 6.925 10 C -0.030 4.030 11 C 0.522 3.478 12 O -0.518 6.518 13 N -0.695 5.695 14 C 0.127 3.873 15 C 0.055 3.945 16 C -0.131 4.131 17 C -0.132 4.132 18 C -0.507 4.507 19 H 0.058 0.942 20 C 0.067 3.933 21 N -0.886 5.886 22 Si 0.894 3.106 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 C -0.109 4.109 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.135 0.865 31 H 0.149 0.851 32 H 0.410 0.590 33 H 0.424 0.576 34 H 0.399 0.601 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.004 0.996 38 H 0.087 0.913 39 H 0.028 0.972 40 H 0.029 0.971 41 H 0.087 0.913 42 H 0.004 0.996 43 H 0.261 0.739 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.886 18.590 3.435 19.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.039 4.039 3 C -0.144 4.144 4 C -0.044 4.044 5 C -0.726 4.726 6 S 2.797 3.203 7 N -0.910 5.910 8 O -0.975 6.975 9 O -0.914 6.914 10 C -0.034 4.034 11 C 0.307 3.693 12 O -0.398 6.398 13 N -0.345 5.345 14 C 0.006 3.994 15 C 0.055 3.945 16 C -0.189 4.189 17 C -0.190 4.190 18 C -0.545 4.545 19 H 0.077 0.923 20 C -0.134 4.134 21 N -0.525 5.525 22 Si 0.722 3.278 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.202 1.202 26 C -0.128 4.128 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.153 0.847 31 H 0.166 0.834 32 H 0.238 0.762 33 H 0.256 0.744 34 H 0.236 0.764 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.023 0.977 38 H 0.105 0.895 39 H 0.047 0.953 40 H 0.048 0.952 41 H 0.105 0.895 42 H 0.023 0.977 43 H 0.071 0.929 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.746 18.752 2.587 19.128 hybrid contribution -0.807 -1.207 0.608 1.575 sum -3.553 17.545 3.195 18.184 Atomic orbital electron populations 1.20958 0.90062 1.03781 1.03240 1.20187 0.96778 0.92871 0.94097 1.21352 0.94217 0.98018 1.00788 1.20960 0.94520 0.96823 0.92131 1.31298 1.28712 0.97617 1.14954 1.01347 0.72986 0.72228 0.73708 1.53386 1.68717 1.27476 1.41372 1.93543 1.81625 1.35363 1.87009 1.93690 1.78919 1.63610 1.55191 1.19786 0.94206 0.92270 0.97126 1.18488 0.87849 0.84203 0.78735 1.90820 1.12253 1.86602 1.50094 1.46213 1.10862 1.06121 1.71283 1.21918 0.95469 0.80707 1.01354 1.18382 0.91931 0.91361 0.92863 1.21852 1.00289 0.99140 0.97635 1.21850 1.00299 0.99111 0.97720 1.20922 0.92896 0.89587 1.51141 0.92331 1.24867 0.94883 0.98992 0.94669 1.69780 1.05919 1.26366 1.50407 0.86614 0.79603 0.82806 0.78744 1.20254 1.21343 1.20223 1.21387 0.92948 0.98686 0.99802 0.90132 0.90803 0.90539 0.84693 0.83372 0.76200 0.74352 0.76417 0.91763 0.91950 0.97726 0.89452 0.95279 0.95200 0.89469 0.97725 0.92907 0.84528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 10.01 36.00 0.36 -0.44 16 2 C -0.04 -0.37 5.87 -104.68 -0.61 -0.98 16 3 C -0.12 -1.13 9.69 -39.49 -0.38 -1.52 16 4 C -0.03 -0.27 9.54 -39.64 -0.38 -0.65 16 5 C -0.64 -8.55 5.94 -39.18 -0.23 -8.78 16 6 S 2.71 39.26 5.47 -107.50 -0.59 38.67 16 7 N -1.23 -14.58 9.22 60.35 0.56 -14.03 16 8 O -0.99 -14.94 16.97 -57.17 -0.97 -15.91 16 9 O -0.92 -17.57 14.77 -67.45 -1.00 -18.57 16 10 C -0.03 -0.42 5.87 -104.97 -0.62 -1.03 16 11 C 0.52 8.72 7.67 -12.33 -0.09 8.63 16 12 O -0.52 -9.72 9.43 -19.95 -0.19 -9.91 16 13 N -0.70 -11.68 4.91 -61.25 -0.30 -11.98 16 14 C 0.13 2.55 4.50 -4.04 -0.02 2.54 16 15 C 0.06 1.22 0.50 -155.65 -0.08 1.14 16 16 C -0.13 -2.78 8.08 37.16 0.30 -2.48 16 17 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 18 C -0.51 -12.82 8.01 -34.44 -0.28 -13.10 16 19 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 20 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 21 N -0.89 -22.89 9.35 55.43 0.52 -22.37 16 22 Si 0.89 20.29 29.54 -169.99 -5.02 15.27 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 C -0.11 -1.25 9.19 -39.18 -0.36 -1.61 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 29 H 0.08 0.48 8.08 -51.93 -0.42 0.06 16 30 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 31 H 0.15 1.37 7.33 -52.49 -0.38 0.99 16 32 H 0.41 3.62 8.96 -34.47 -0.31 3.32 16 33 H 0.42 5.30 6.79 -34.47 -0.23 5.07 16 34 H 0.40 5.97 4.20 -40.82 -0.17 5.79 16 35 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.00 0.07 6.86 -51.93 -0.36 -0.29 16 38 H 0.09 2.07 6.07 -51.93 -0.32 1.76 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 2.10 6.07 -51.93 -0.32 1.78 16 42 H 0.00 0.07 6.86 -51.93 -0.36 -0.28 16 43 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 44 H 0.14 1.38 6.41 -52.48 -0.34 1.04 16 LS Contribution 359.62 15.07 5.42 5.42 Total: -1.00 -31.97 359.62 -9.45 -41.41 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -5.70 Total: 11.22 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: -2.18 Total: -19.23 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.77 Total: -48.38 kcal Atomic # 8 Polarization: -42.23 SS G_CDS: -2.15 Total: -44.39 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: 39.26 SS G_CDS: -0.59 Total: 38.67 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.97 -9.45 -41.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457993421.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.084 kcal (2) G-P(sol) polarization free energy of solvation -31.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.92 seconds