Wall clock time and date at job start Tue Mar 31 2020 22:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00277 * 2 1 4 4 H 1.48495 * 109.47374 * 270.00089 * 3 2 1 5 5 H 1.48500 * 109.46980 * 30.00033 * 3 2 1 6 6 H 1.48496 * 109.47376 * 149.99798 * 3 2 1 7 7 C 1.38722 * 119.99667 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99843 * 359.97438 * 7 2 1 9 9 O 1.34776 * 119.99752 * 180.02562 * 7 2 1 10 10 C 1.35572 * 117.00059 * 186.21100 * 9 7 2 11 11 C 1.39181 * 119.89557 * 7.19854 * 10 9 7 12 12 C 1.37598 * 120.09711 * 179.74749 * 11 10 9 13 13 C 1.40021 * 119.90133 * 0.26017 * 12 11 10 14 14 C 1.46963 * 120.10089 * 179.97438 * 13 12 11 15 15 C 1.35019 * 120.00163 * 135.37449 * 14 13 12 16 16 C 1.46256 * 119.99732 * 346.78433 * 15 14 13 17 17 O 1.21715 * 120.00414 * 353.02695 * 16 15 14 18 18 N 1.34781 * 119.99486 * 173.02496 * 16 15 14 19 19 C 1.47078 * 120.94284 * 179.72331 * 18 16 15 20 20 C 1.53802 * 108.99004 * 116.46670 * 19 18 16 21 21 N 1.46224 * 109.15188 * 45.82139 * 20 19 18 22 22 C 1.34795 * 128.60094 * 161.71398 * 21 20 19 23 23 N 1.30821 * 107.11369 * 179.37964 * 22 21 20 24 24 N 1.28921 * 109.74758 * 0.14704 * 23 22 21 25 25 C 1.29730 * 109.42472 * 0.11180 * 24 23 22 26 26 C 1.47520 * 120.94882 * 359.97438 * 18 16 15 27 27 C 1.40019 * 119.79900 * 359.97438 * 13 12 11 28 28 C 1.37600 * 119.89433 * 0.02562 * 27 13 12 29 29 H 0.97007 * 119.99551 * 359.97438 * 1 2 3 30 30 H 1.08000 * 119.94891 * 0.02915 * 11 10 9 31 31 H 1.08005 * 120.04694 * 180.28224 * 12 11 10 32 32 H 1.08006 * 119.99635 * 315.36677 * 14 13 12 33 33 H 1.07996 * 120.00110 * 166.79471 * 15 14 13 34 34 H 1.09006 * 109.50512 * 236.39667 * 19 18 16 35 35 H 1.09003 * 109.50524 * 356.53152 * 19 18 16 36 36 H 1.09000 * 109.61720 * 285.86407 * 20 19 18 37 37 H 1.09000 * 109.49447 * 165.70305 * 20 19 18 38 38 H 1.07999 * 126.44085 * 359.36086 * 22 21 20 39 39 H 1.09003 * 109.95493 * 342.48328 * 26 18 16 40 40 H 1.09000 * 109.95972 * 103.75982 * 26 18 16 41 41 H 1.08002 * 120.05486 * 179.97438 * 27 13 12 42 42 H 1.08012 * 119.94647 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0087 -1.2014 -0.0005 8 1 1.4686 -2.1367 -0.0005 9 8 3.3564 -1.2014 0.0000 10 6 3.9720 -2.4022 -0.1313 11 6 3.2204 -3.5404 -0.4083 12 6 3.8414 -4.7604 -0.5475 13 6 5.2310 -4.8566 -0.4046 14 6 5.8987 -6.1574 -0.5519 15 6 7.0332 -6.2557 -1.2774 16 6 7.4422 -5.1539 -2.1479 17 8 6.7001 -4.2041 -2.3170 18 7 8.6410 -5.1903 -2.7628 19 6 9.0708 -4.0966 -3.6472 20 6 10.3153 -3.4243 -3.0433 21 7 11.2553 -4.4567 -2.6092 22 6 12.5718 -4.3381 -2.3452 23 7 12.9986 -5.5188 -1.9774 24 7 12.0233 -6.3615 -2.0016 25 6 10.9410 -5.7580 -2.3856 26 6 9.5571 -6.3308 -2.5721 27 6 5.9824 -3.7096 -0.1211 28 6 5.3528 -2.4939 0.0164 29 1 -0.4850 0.8401 0.0004 30 1 2.1487 -3.4652 -0.5187 31 1 3.2579 -5.6423 -0.7670 32 1 5.4820 -7.0348 -0.0795 33 1 7.6384 -7.1480 -1.2150 34 1 9.3126 -4.4981 -4.6314 35 1 8.2675 -3.3656 -3.7388 36 1 10.0233 -2.8147 -2.1882 37 1 10.7890 -2.7934 -3.7955 38 1 13.1631 -3.4377 -2.4229 39 1 9.2666 -6.8974 -1.6874 40 1 9.5368 -6.9752 -3.4510 41 1 7.0544 -3.7792 -0.0096 42 1 5.9316 -1.6085 0.2347 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491548821.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:03 Heat of formation + Delta-G solvation = 97.072638 kcal Electronic energy + Delta-G solvation = -28407.336832 eV Core-core repulsion = 24356.519440 eV Total energy + Delta-G solvation = -4050.817391 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.63276 -40.25997 -39.08836 -37.42016 -36.42135 -34.74218 -33.30010 -32.38538 -31.66760 -30.52206 -30.31427 -28.37711 -26.83838 -25.64736 -24.87501 -23.11760 -22.57322 -22.01308 -21.24139 -20.29115 -18.60534 -18.05861 -17.88796 -17.48264 -17.13791 -16.95070 -16.04378 -15.75615 -15.19591 -14.91560 -14.85105 -14.49040 -14.15769 -14.09974 -13.85338 -13.53561 -13.49718 -13.24445 -13.11186 -12.74355 -12.63348 -12.34934 -12.28795 -12.18677 -11.80181 -11.55044 -11.04657 -10.88622 -10.79472 -10.71733 -10.55357 -10.21917 -9.82512 -9.62320 -9.59963 -9.34543 -9.17295 -8.85105 -8.17794 -7.12153 -6.49917 -4.13790 0.99338 1.42484 1.95353 2.20376 2.43302 2.50273 2.58538 3.16908 3.20716 3.25882 3.35177 3.69908 3.88858 4.12287 4.17300 4.36843 4.39429 4.51014 4.60128 4.67697 4.80817 4.85708 5.00540 5.03512 5.12196 5.14469 5.22199 5.40428 5.43782 5.55969 5.63526 5.70797 5.86545 6.07464 6.11636 6.23559 6.36653 6.42514 6.54010 6.80203 7.01603 7.08268 7.20959 7.27621 7.56764 7.74916 7.97247 8.09754 8.34039 8.84981 9.48485 10.57272 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018461 B = 0.002522 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.352856 B =11097.762344 C =12098.960719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.388 4.388 8 H 0.108 0.892 9 O -0.211 6.211 10 C 0.176 3.824 11 C -0.233 4.233 12 C -0.042 4.042 13 C -0.181 4.181 14 C 0.038 3.962 15 C -0.274 4.274 16 C 0.553 3.447 17 O -0.501 6.501 18 N -0.630 5.630 19 C 0.100 3.900 20 C 0.088 3.912 21 N -0.468 5.468 22 C 0.157 3.843 23 N -0.300 5.300 24 N -0.284 5.284 25 C 0.162 3.838 26 C 0.201 3.799 27 C -0.001 4.001 28 C -0.200 4.200 29 H 0.281 0.719 30 H 0.133 0.867 31 H 0.110 0.890 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.081 0.919 35 H 0.124 0.876 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.220 0.780 39 H 0.122 0.878 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.402 -10.137 -6.760 22.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.463 4.463 8 H 0.125 0.875 9 O -0.115 6.115 10 C 0.123 3.877 11 C -0.253 4.253 12 C -0.060 4.060 13 C -0.182 4.182 14 C 0.018 3.982 15 C -0.295 4.295 16 C 0.346 3.654 17 O -0.376 6.376 18 N -0.367 5.367 19 C -0.024 4.024 20 C -0.036 4.036 21 N -0.159 5.159 22 C -0.131 4.131 23 N -0.140 5.140 24 N -0.124 5.124 25 C -0.107 4.107 26 C 0.076 3.924 27 C -0.019 4.019 28 C -0.219 4.219 29 H 0.091 0.909 30 H 0.151 0.849 31 H 0.128 0.872 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.099 0.901 35 H 0.142 0.858 36 H 0.116 0.884 37 H 0.126 0.874 38 H 0.237 0.763 39 H 0.140 0.860 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 19.749 -10.275 -6.359 23.152 hybrid contribution -0.421 1.783 -0.593 1.926 sum 19.328 -8.491 -6.951 22.226 Atomic orbital electron populations 1.69628 1.05634 1.28667 1.47186 1.24512 0.95050 0.98937 0.95523 0.86173 0.80370 0.81315 0.79032 1.19830 1.20665 1.18297 1.20821 0.76839 0.96712 1.51968 0.87476 1.83527 1.22718 1.26351 1.78881 1.19293 0.91541 0.85468 0.91433 1.21105 1.01089 0.92429 1.10636 1.20810 0.92681 0.96731 0.95770 1.18366 0.93365 0.92574 1.13899 1.22433 0.90732 0.96053 0.88943 1.22637 1.01976 1.00097 1.04795 1.18521 0.79705 0.87121 0.80040 1.91007 1.50567 1.34252 1.61748 1.48248 1.17960 1.21262 1.49183 1.21921 0.96007 0.91607 0.92848 1.22602 0.89481 0.89438 1.02100 1.46143 1.09621 1.10216 1.49912 1.26370 0.82607 1.01229 1.02868 1.74499 1.22517 0.98128 1.18815 1.74057 0.95546 1.25004 1.17829 1.24988 0.99266 0.82611 1.03811 1.20228 0.79369 0.88046 1.04786 1.20424 0.96889 0.90926 0.93677 1.19993 0.91954 0.97821 1.12160 0.90907 0.84924 0.87158 0.85497 0.85453 0.90083 0.85825 0.88431 0.87410 0.76346 0.86020 0.88118 0.88115 0.86827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.85 13.96 55.48 0.77 -24.07 16 2 C 0.06 1.77 5.49 -17.51 -0.10 1.67 16 3 Si 0.91 21.37 28.62 -169.99 -4.86 16.50 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 6 H -0.26 -6.13 7.11 56.52 0.40 -5.72 16 7 C -0.39 -10.80 9.87 30.91 0.31 -10.50 16 8 H 0.11 3.04 5.56 -52.49 -0.29 2.75 16 9 O -0.21 -5.54 8.57 0.75 0.01 -5.53 16 10 C 0.18 4.08 6.65 -38.89 -0.26 3.82 16 11 C -0.23 -5.02 9.10 -39.47 -0.36 -5.38 16 12 C -0.04 -0.74 9.78 -39.15 -0.38 -1.13 16 13 C -0.18 -2.99 4.43 -105.03 -0.47 -3.45 16 14 C 0.04 0.46 9.79 -37.19 -0.36 0.10 16 15 C -0.27 -2.91 9.10 -37.51 -0.34 -3.25 16 16 C 0.55 6.77 6.71 -13.04 -0.09 6.68 16 17 O -0.50 -8.17 11.92 5.17 0.06 -8.11 16 18 N -0.63 -5.71 2.96 -174.82 -0.52 -6.23 16 19 C 0.10 0.72 6.46 -3.31 -0.02 0.70 16 20 C 0.09 0.51 7.20 -3.77 -0.03 0.48 16 21 N -0.47 -3.84 3.11 -115.21 -0.36 -4.20 16 22 C 0.16 1.32 12.81 -90.33 -1.16 0.16 16 23 N -0.30 -3.67 12.23 29.60 0.36 -3.31 16 24 N -0.28 -3.55 12.21 32.78 0.40 -3.15 16 25 C 0.16 1.59 7.88 -155.32 -1.22 0.37 16 26 C 0.20 1.50 6.60 -4.52 -0.03 1.47 16 27 C 0.00 -0.01 6.74 -39.15 -0.26 -0.28 16 28 C -0.20 -4.05 9.97 -39.47 -0.39 -4.44 16 29 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.13 2.98 5.74 -52.49 -0.30 2.68 16 31 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 32 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 33 H 0.13 0.92 6.15 -52.49 -0.32 0.60 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.12 1.06 7.01 -51.93 -0.36 0.70 16 36 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.22 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.12 0.79 5.74 -51.93 -0.30 0.49 16 40 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.10 1.60 7.24 -52.49 -0.38 1.22 16 42 H 0.11 2.17 8.06 -52.48 -0.42 1.75 16 LS Contribution 354.04 15.07 5.34 5.34 Total: -1.00 -35.07 354.04 -8.44 -43.52 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -4.47 Total: 2.25 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -5.17 Total: -12.99 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: 0.66 Total: -40.97 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.07 Total: -13.64 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.86 Total: 16.50 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.07 -8.44 -43.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491548821.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.588 kcal (2) G-P(sol) polarization free energy of solvation -35.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds