Wall clock time and date at job start Tue Mar 31 2020 22:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86806 * 119.99800 * 2 1 4 4 H 1.48491 * 109.47163 * 240.00150 * 3 2 1 5 5 H 1.48501 * 109.47076 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46866 * 119.99847 * 3 2 1 7 7 C 1.38944 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99964 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99920 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00278 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99678 * 359.97438 * 10 9 7 12 12 C 1.50690 * 120.00473 * 180.02562 * 10 9 7 13 13 N 1.46500 * 109.47629 * 179.97438 * 12 10 9 14 14 C 1.34770 * 120.00481 * 179.97438 * 13 12 10 15 15 O 1.21716 * 120.00213 * 0.02562 * 14 13 12 16 16 C 1.46300 * 120.00281 * 180.02562 * 14 13 12 17 17 C 1.34969 * 120.00170 * 180.02562 * 16 14 13 18 18 C 1.46973 * 120.00119 * 179.97438 * 17 16 14 19 19 C 1.39879 * 120.21365 * 344.57007 * 18 17 16 20 20 C 1.37797 * 119.89167 * 179.97438 * 19 18 17 21 21 C 1.38552 * 120.33152 * 359.97438 * 20 19 18 22 22 C 1.38130 * 120.43842 * 0.02562 * 21 20 19 23 23 C 1.38684 * 120.09894 * 359.72351 * 22 21 20 24 24 N 1.39728 * 120.16423 * 180.29475 * 23 22 21 25 25 C 1.35846 * 126.10305 * 312.45613 * 24 23 22 26 26 C 1.35296 * 107.61392 * 179.89718 * 25 24 23 27 27 C 1.39956 * 107.96556 * 0.37187 * 26 25 24 28 28 N 1.30832 * 108.36942 * 359.76764 * 27 26 25 29 29 H 0.97001 * 120.00292 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00470 * 0.02562 * 9 7 2 31 31 H 1.09006 * 109.47146 * 60.00058 * 12 10 9 32 32 H 1.08998 * 109.47569 * 299.99679 * 12 10 9 33 33 H 0.97005 * 119.99584 * 0.02562 * 13 12 10 34 34 H 1.07997 * 119.99893 * 359.97438 * 16 14 13 35 35 H 1.08002 * 120.00051 * 0.02562 * 17 16 14 36 36 H 1.08001 * 120.05422 * 0.02587 * 19 18 17 37 37 H 1.08005 * 119.83164 * 180.02562 * 20 19 18 38 38 H 1.08000 * 119.78097 * 179.97438 * 21 20 19 39 39 H 1.08002 * 119.95325 * 179.97438 * 22 21 20 40 40 H 1.08002 * 126.19344 * 0.02562 * 25 24 23 41 41 H 1.07994 * 126.01687 * 180.13249 * 26 25 24 42 42 H 1.08001 * 125.81156 * 179.76767 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2124 5 1 1.2831 2.7465 0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0010 12 6 1.2440 -4.8628 -0.0011 13 7 2.1959 -5.9764 -0.0016 14 6 1.7468 -7.2470 -0.0017 15 8 0.5501 -7.4695 -0.0018 16 6 2.6975 -8.3590 -0.0016 17 6 2.2476 -9.6315 -0.0022 18 6 3.2027 -10.7486 -0.0027 19 6 4.5458 -10.5263 -0.3242 20 6 5.4357 -11.5784 -0.3221 21 6 5.0072 -12.8566 -0.0024 22 6 3.6841 -13.0916 0.3172 23 6 2.7741 -12.0451 0.3258 24 7 1.4367 -12.2802 0.6549 25 6 0.6531 -13.2733 0.1596 26 6 -0.5676 -13.1551 0.7308 27 6 -0.5353 -12.0542 1.5944 28 7 0.6626 -11.5302 1.5498 29 1 -0.4850 0.8400 0.0004 30 1 0.3535 -2.3907 -0.0005 31 1 0.6176 -4.9204 -0.8914 32 1 0.6170 -4.9209 0.8886 33 1 3.1496 -5.7991 -0.0012 34 1 3.7593 -8.1616 -0.0019 35 1 1.1858 -9.8289 -0.0031 36 1 4.8849 -9.5315 -0.5728 37 1 6.4726 -11.4055 -0.5701 38 1 5.7121 -13.6748 -0.0039 39 1 3.3585 -14.0912 0.5648 40 1 0.9513 -14.0229 -0.5585 41 1 -1.4184 -13.7950 0.5492 42 1 -1.3591 -11.6979 2.1951 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492886365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:52 Heat of formation + Delta-G solvation = 57.847966 kcal Electronic energy + Delta-G solvation = -26951.060360 eV Core-core repulsion = 22898.542059 eV Total energy + Delta-G solvation = -4052.518301 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.73295 -39.72973 -39.28484 -38.08764 -34.56150 -34.26223 -33.84020 -33.63093 -31.38321 -30.52214 -30.31572 -29.25366 -27.70014 -24.97906 -24.02950 -23.79341 -21.73027 -21.11986 -20.76053 -19.76475 -19.24652 -18.48866 -18.07432 -17.41183 -16.45542 -16.11786 -15.53391 -15.39400 -15.20414 -15.14091 -14.78303 -14.52000 -14.30345 -14.07610 -13.94323 -13.79695 -13.77191 -13.32014 -13.22161 -13.00981 -12.63146 -12.18240 -11.95135 -11.77480 -11.64740 -11.61236 -11.10224 -11.03277 -10.59965 -10.50380 -10.31081 -10.21364 -9.79379 -9.62278 -9.42865 -8.97374 -8.76954 -8.62863 -8.36755 -8.09657 -6.50740 -3.92928 0.15746 0.63449 1.63613 1.78271 2.12443 2.55717 3.14098 3.19176 3.21760 3.24736 3.41043 3.56308 3.75454 4.11392 4.22182 4.31837 4.43158 4.51353 4.59582 4.79760 4.87201 4.89111 4.99109 5.04251 5.17632 5.21791 5.30432 5.38504 5.51483 5.65720 5.67339 5.75894 5.91148 5.95019 5.98047 6.07843 6.17553 6.22949 6.33842 6.37138 6.70202 6.86167 7.36900 7.46321 7.84733 7.92333 8.44397 8.49048 9.04889 9.39746 9.87703 10.66049 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019199 B = 0.001895 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.050025 B =14768.865620 C =16091.894189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.306 4.306 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.598 6.598 12 C 0.109 3.891 13 N -0.701 5.701 14 C 0.542 3.458 15 O -0.550 6.550 16 C -0.190 4.190 17 C -0.028 4.028 18 C -0.054 4.054 19 C -0.089 4.089 20 C -0.116 4.116 21 C -0.097 4.097 22 C -0.123 4.123 23 C 0.164 3.836 24 N -0.334 5.334 25 C 0.054 3.946 26 C -0.260 4.260 27 C 0.052 3.948 28 N -0.275 5.275 29 H 0.275 0.725 30 H 0.396 0.604 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.411 0.589 34 H 0.130 0.870 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.176 0.824 41 H 0.153 0.847 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.851 -29.275 -0.775 29.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.183 5.183 10 C 0.214 3.786 11 O -0.485 6.485 12 C -0.019 4.019 13 N -0.354 5.354 14 C 0.331 3.669 15 O -0.430 6.430 16 C -0.211 4.211 17 C -0.047 4.047 18 C -0.056 4.056 19 C -0.108 4.108 20 C -0.134 4.134 21 C -0.115 4.115 22 C -0.144 4.144 23 C 0.073 3.927 24 N -0.112 5.112 25 C -0.088 4.088 26 C -0.289 4.289 27 C -0.136 4.136 28 N -0.093 5.093 29 H 0.085 0.915 30 H 0.230 0.770 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.249 0.751 34 H 0.148 0.852 35 H 0.156 0.844 36 H 0.158 0.842 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.150 0.850 40 H 0.193 0.807 41 H 0.171 0.829 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 5.488 -28.264 -0.357 28.794 hybrid contribution -0.398 0.301 -0.271 0.567 sum 5.091 -27.963 -0.627 28.430 Atomic orbital electron populations 1.69609 1.06005 1.28638 1.49216 1.25334 0.95680 0.99949 0.96785 0.85862 0.78766 0.80128 0.79147 1.19776 1.20853 1.19775 1.19679 0.93435 0.82010 1.48374 0.87723 1.41791 1.09498 1.04467 1.62590 1.19740 0.88287 0.84997 0.85591 1.90491 1.13711 1.86844 1.57419 1.20958 0.91904 0.85726 1.03315 1.45597 1.11582 1.04571 1.73631 1.18178 0.88518 0.83075 0.77166 1.90809 1.16429 1.85082 1.50717 1.22963 0.99844 0.92774 1.05506 1.22202 0.99637 0.90711 0.92194 1.18977 0.94132 0.92077 1.00427 1.21456 0.91168 1.00186 0.97949 1.21230 1.00252 0.92456 0.99465 1.21128 0.94725 0.97541 0.98156 1.20989 0.92851 0.98346 1.02165 1.17457 0.80709 0.93841 1.00732 1.45857 1.08121 1.23500 1.33693 1.22796 0.91596 0.94062 1.00335 1.21604 0.98572 1.03733 1.04982 1.24138 0.95510 0.94861 0.99059 1.77694 1.04127 1.17102 1.10379 0.91526 0.77008 0.89783 0.89752 0.75053 0.85210 0.84353 0.84240 0.84821 0.84807 0.85023 0.80691 0.82918 0.79418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.09 13.05 55.50 0.72 -23.36 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.68 29.55 -169.99 -5.02 15.65 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 7 C -0.31 -8.38 9.68 -14.94 -0.14 -8.52 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 9 N -0.55 -13.82 5.29 -10.97 -0.06 -13.87 16 10 C 0.43 10.01 7.85 -10.99 -0.09 9.92 16 11 O -0.60 -15.47 15.24 5.54 0.08 -15.38 16 12 C 0.11 2.08 6.15 -5.20 -0.03 2.05 16 13 N -0.70 -12.27 5.52 -62.93 -0.35 -12.61 16 14 C 0.54 9.32 7.74 -13.02 -0.10 9.22 16 15 O -0.55 -11.19 16.23 5.17 0.08 -11.10 16 16 C -0.19 -2.57 9.36 -37.50 -0.35 -2.92 16 17 C -0.03 -0.37 8.57 -37.21 -0.32 -0.69 16 18 C -0.05 -0.60 5.85 -104.92 -0.61 -1.21 16 19 C -0.09 -0.76 9.35 -39.13 -0.37 -1.12 16 20 C -0.12 -0.75 10.02 -39.63 -0.40 -1.15 16 21 C -0.10 -0.58 10.03 -39.51 -0.40 -0.97 16 22 C -0.12 -0.91 9.62 -39.46 -0.38 -1.29 16 23 C 0.16 1.70 6.27 -83.26 -0.52 1.18 16 24 N -0.33 -3.73 3.29 -10.32 -0.03 -3.76 16 25 C 0.05 0.46 11.16 -16.82 -0.19 0.27 16 26 C -0.26 -2.17 10.80 -39.99 -0.43 -2.61 16 27 C 0.05 0.54 12.02 -17.33 -0.21 0.33 16 28 N -0.28 -3.62 10.64 30.64 0.33 -3.29 16 29 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.40 9.60 7.90 -40.82 -0.32 9.27 16 31 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 32 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 33 H 0.41 6.91 7.42 -40.82 -0.30 6.61 16 34 H 0.13 1.36 6.34 -52.49 -0.33 1.02 16 35 H 0.14 2.20 6.16 -52.49 -0.32 1.87 16 36 H 0.14 0.99 6.45 -52.49 -0.34 0.65 16 37 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 38 H 0.13 0.44 8.06 -52.49 -0.42 0.01 16 39 H 0.13 0.72 8.03 -52.49 -0.42 0.30 16 40 H 0.18 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.19 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 374.45 15.07 5.64 5.64 Total: -1.00 -34.91 374.45 -7.75 -42.65 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: -4.51 Total: 16.38 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -4.63 Total: 3.05 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: 0.61 Total: -56.90 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: 0.17 Total: -26.49 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.91 -7.75 -42.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492886365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.501 kcal (2) G-P(sol) polarization free energy of solvation -34.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds