Wall clock time and date at job start Tue Mar 31 2020 22:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86806 * 119.99800 * 2 1 4 4 H 1.48491 * 109.47163 * 240.00150 * 3 2 1 5 5 H 1.48501 * 109.47076 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46866 * 119.99847 * 3 2 1 7 7 C 1.38944 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99964 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99920 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00278 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99678 * 359.97438 * 10 9 7 12 12 C 1.50690 * 120.00473 * 180.02562 * 10 9 7 13 13 N 1.46500 * 109.47629 * 179.97438 * 12 10 9 14 14 C 1.34770 * 120.00481 * 179.97438 * 13 12 10 15 15 O 1.21716 * 120.00213 * 0.02562 * 14 13 12 16 16 C 1.46300 * 120.00281 * 180.02562 * 14 13 12 17 17 C 1.34969 * 120.00170 * 180.02562 * 16 14 13 18 18 C 1.46973 * 120.00119 * 179.97438 * 17 16 14 19 19 C 1.39879 * 120.21365 * 344.57007 * 18 17 16 20 20 C 1.37797 * 119.89167 * 179.97438 * 19 18 17 21 21 C 1.38552 * 120.33152 * 359.97438 * 20 19 18 22 22 C 1.38130 * 120.43842 * 0.02562 * 21 20 19 23 23 C 1.38684 * 120.09894 * 359.72351 * 22 21 20 24 24 N 1.39728 * 120.16423 * 180.29475 * 23 22 21 25 25 C 1.35846 * 126.10305 * 312.45613 * 24 23 22 26 26 C 1.35296 * 107.61392 * 179.89718 * 25 24 23 27 27 C 1.39956 * 107.96556 * 0.37187 * 26 25 24 28 28 N 1.30832 * 108.36942 * 359.76764 * 27 26 25 29 29 H 0.97001 * 120.00292 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00470 * 0.02562 * 9 7 2 31 31 H 1.09006 * 109.47146 * 60.00058 * 12 10 9 32 32 H 1.08998 * 109.47569 * 299.99679 * 12 10 9 33 33 H 0.97005 * 119.99584 * 0.02562 * 13 12 10 34 34 H 1.07997 * 119.99893 * 359.97438 * 16 14 13 35 35 H 1.08002 * 120.00051 * 0.02562 * 17 16 14 36 36 H 1.08001 * 120.05422 * 0.02587 * 19 18 17 37 37 H 1.08005 * 119.83164 * 180.02562 * 20 19 18 38 38 H 1.08000 * 119.78097 * 179.97438 * 21 20 19 39 39 H 1.08002 * 119.95325 * 179.97438 * 22 21 20 40 40 H 1.08002 * 126.19344 * 0.02562 * 25 24 23 41 41 H 1.07994 * 126.01687 * 180.13249 * 26 25 24 42 42 H 1.08001 * 125.81156 * 179.76767 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2124 5 1 1.2831 2.7465 0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0010 12 6 1.2440 -4.8628 -0.0011 13 7 2.1959 -5.9764 -0.0016 14 6 1.7468 -7.2470 -0.0017 15 8 0.5501 -7.4695 -0.0018 16 6 2.6975 -8.3590 -0.0016 17 6 2.2476 -9.6315 -0.0022 18 6 3.2027 -10.7486 -0.0027 19 6 4.5458 -10.5263 -0.3242 20 6 5.4357 -11.5784 -0.3221 21 6 5.0072 -12.8566 -0.0024 22 6 3.6841 -13.0916 0.3172 23 6 2.7741 -12.0451 0.3258 24 7 1.4367 -12.2802 0.6549 25 6 0.6531 -13.2733 0.1596 26 6 -0.5676 -13.1551 0.7308 27 6 -0.5353 -12.0542 1.5944 28 7 0.6626 -11.5302 1.5498 29 1 -0.4850 0.8400 0.0004 30 1 0.3535 -2.3907 -0.0005 31 1 0.6176 -4.9204 -0.8914 32 1 0.6170 -4.9209 0.8886 33 1 3.1496 -5.7991 -0.0012 34 1 3.7593 -8.1616 -0.0019 35 1 1.1858 -9.8289 -0.0031 36 1 4.8849 -9.5315 -0.5728 37 1 6.4726 -11.4055 -0.5701 38 1 5.7121 -13.6748 -0.0039 39 1 3.3585 -14.0912 0.5648 40 1 0.9513 -14.0229 -0.5585 41 1 -1.4184 -13.7950 0.5492 42 1 -1.3591 -11.6979 2.1951 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492886365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:51 Heat of formation + Delta-G solvation = 34.271569 kcal Electronic energy + Delta-G solvation = -26952.082709 eV Core-core repulsion = 22898.542059 eV Total energy + Delta-G solvation = -4053.540650 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.42793 -41.07396 -40.18055 -39.80932 -36.30016 -35.40467 -35.18757 -34.50334 -33.40234 -31.31447 -31.05952 -30.04711 -29.15952 -26.67587 -25.12966 -24.43611 -22.75493 -21.79373 -21.54370 -21.44347 -20.62499 -20.01556 -19.20319 -18.61641 -17.44175 -17.39102 -16.81104 -16.76887 -16.58128 -16.27367 -15.95560 -15.69210 -15.49389 -15.40526 -15.07258 -14.93826 -14.58621 -14.37752 -14.01680 -13.94436 -13.67782 -13.60633 -13.55938 -13.39976 -12.91174 -12.48862 -12.48451 -12.26423 -12.14318 -11.78308 -11.58169 -11.41764 -11.22452 -10.94320 -10.59770 -10.29110 -10.11592 -10.09999 -9.61612 -9.13822 -8.52503 -6.03319 -0.64909 0.04273 0.79530 1.04405 1.36955 1.41748 1.48098 1.53098 1.86245 1.87074 1.99478 2.18285 2.30901 2.70509 3.08479 3.14209 3.47850 3.58959 3.82223 3.93799 3.99510 4.04106 4.16713 4.19475 4.29080 4.33288 4.37391 4.38492 4.47405 4.69917 4.76425 4.85297 4.93207 5.05192 5.12076 5.21863 5.28901 5.36357 5.40961 5.45362 5.64045 5.76721 5.89191 6.23019 6.42761 6.49208 6.64265 7.00733 7.09355 7.41051 7.90858 8.64159 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019199 B = 0.001895 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.050025 B =14768.865620 C =16091.894189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.012 4.012 3 Si 0.999 3.001 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.339 4.339 8 H 0.088 0.912 9 N -0.559 5.559 10 C 0.433 3.567 11 O -0.622 6.622 12 C 0.120 3.880 13 N -0.699 5.699 14 C 0.543 3.457 15 O -0.589 6.589 16 C -0.208 4.208 17 C -0.010 4.010 18 C -0.089 4.089 19 C -0.091 4.091 20 C -0.113 4.113 21 C -0.081 4.081 22 C -0.124 4.124 23 C 0.144 3.856 24 N -0.344 5.344 25 C 0.054 3.946 26 C -0.265 4.265 27 C 0.039 3.961 28 N -0.331 5.331 29 H 0.280 0.720 30 H 0.399 0.601 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.416 0.584 34 H 0.162 0.838 35 H 0.108 0.892 36 H 0.150 0.850 37 H 0.164 0.836 38 H 0.171 0.829 39 H 0.152 0.848 40 H 0.211 0.789 41 H 0.180 0.820 42 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.771 -31.287 -1.327 32.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.213 4.213 3 Si 0.822 3.178 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.106 0.894 9 N -0.194 5.194 10 C 0.220 3.780 11 O -0.511 6.511 12 C -0.008 4.008 13 N -0.352 5.352 14 C 0.334 3.666 15 O -0.472 6.472 16 C -0.228 4.228 17 C -0.030 4.030 18 C -0.091 4.091 19 C -0.109 4.109 20 C -0.131 4.131 21 C -0.099 4.099 22 C -0.144 4.144 23 C 0.053 3.947 24 N -0.122 5.122 25 C -0.087 4.087 26 C -0.293 4.293 27 C -0.148 4.148 28 N -0.150 5.150 29 H 0.090 0.910 30 H 0.233 0.767 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.255 0.745 34 H 0.179 0.821 35 H 0.126 0.874 36 H 0.167 0.833 37 H 0.182 0.818 38 H 0.188 0.812 39 H 0.170 0.830 40 H 0.228 0.772 41 H 0.197 0.803 42 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 7.405 -30.293 -0.907 31.198 hybrid contribution -0.969 0.712 -0.110 1.208 sum 6.436 -29.581 -1.017 30.290 Atomic orbital electron populations 1.69681 1.07062 1.29768 1.49094 1.26181 0.96579 1.02814 0.95694 0.84894 0.77693 0.76036 0.79161 1.19360 1.19607 1.19439 1.19721 0.93022 0.83468 1.50566 0.89435 1.41846 1.09602 1.04632 1.63311 1.20333 0.88114 0.85803 0.83730 1.90465 1.15024 1.87501 1.58069 1.20781 0.91781 0.84069 1.04124 1.45568 1.11444 1.04328 1.73877 1.18723 0.88599 0.83452 0.75854 1.90782 1.18256 1.85513 1.52676 1.22867 1.00453 0.91308 1.08201 1.22175 0.98931 0.91818 0.90060 1.18997 0.94853 0.91627 1.03634 1.21675 0.90307 1.01569 0.97348 1.21628 1.01275 0.92005 0.98229 1.21620 0.94534 0.98408 0.95335 1.21294 0.93006 0.98441 1.01664 1.17864 0.81031 0.94494 1.01335 1.46024 1.08631 1.23843 1.33693 1.23465 0.91289 0.93792 1.00191 1.21973 0.99593 1.03396 1.04317 1.24582 0.95295 0.95429 0.99509 1.77604 1.05607 1.19184 1.12620 0.91019 0.76726 0.88837 0.89023 0.74522 0.82091 0.87394 0.83275 0.81804 0.81197 0.83016 0.77194 0.80281 0.78065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.38 13.05 21.66 0.28 -49.10 16 2 C -0.01 -0.63 5.50 84.92 0.47 -0.17 16 3 Si 1.00 42.12 29.55 68.60 2.03 44.15 16 4 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 6 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.34 -18.91 9.68 84.04 0.81 -18.10 16 8 H 0.09 5.10 7.16 -2.91 -0.02 5.08 16 9 N -0.56 -28.77 5.29 -307.00 -1.62 -30.39 16 10 C 0.43 20.64 7.85 87.65 0.69 21.33 16 11 O -0.62 -32.75 15.24 -3.08 -0.05 -32.80 16 12 C 0.12 4.70 6.15 85.63 0.53 5.23 16 13 N -0.70 -24.90 5.52 -471.21 -2.60 -27.50 16 14 C 0.54 19.26 7.74 86.34 0.67 19.93 16 15 O -0.59 -25.07 16.23 -4.40 -0.07 -25.14 16 16 C -0.21 -5.75 9.36 23.62 0.22 -5.53 16 17 C -0.01 -0.27 8.57 23.81 0.20 -0.06 16 18 C -0.09 -1.94 5.85 -20.05 -0.12 -2.05 16 19 C -0.09 -1.37 9.35 22.56 0.21 -1.16 16 20 C -0.11 -1.05 10.02 22.24 0.22 -0.83 16 21 C -0.08 -0.63 10.03 22.32 0.22 -0.41 16 22 C -0.12 -1.50 9.62 22.35 0.22 -1.28 16 23 C 0.14 2.87 6.27 38.53 0.24 3.11 16 24 N -0.34 -7.68 3.29 -186.56 -0.61 -8.29 16 25 C 0.05 0.86 11.16 83.39 0.93 1.79 16 26 C -0.26 -4.24 10.80 22.01 0.24 -4.01 16 27 C 0.04 0.83 12.02 85.26 1.02 1.86 16 28 N -0.33 -9.17 10.64 -56.97 -0.61 -9.78 16 29 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 30 H 0.40 19.79 7.90 -92.71 -0.73 19.06 16 31 H 0.09 3.50 8.14 -2.38 -0.02 3.48 16 32 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 33 H 0.42 14.11 7.42 -92.70 -0.69 13.42 16 34 H 0.16 3.28 6.34 -2.91 -0.02 3.26 16 35 H 0.11 3.70 6.16 -2.91 -0.02 3.69 16 36 H 0.15 1.84 6.45 -2.91 -0.02 1.82 16 37 H 0.16 0.55 8.06 -2.91 -0.02 0.52 16 38 H 0.17 0.14 8.06 -2.91 -0.02 0.12 16 39 H 0.15 1.15 8.03 -2.91 -0.02 1.13 16 40 H 0.21 1.51 8.06 -2.91 -0.02 1.48 16 41 H 0.18 1.72 8.06 -2.91 -0.02 1.69 16 42 H 0.20 3.30 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -78.54 374.45 3.20 -75.34 By element: Atomic # 1 Polarization: 44.19 SS G_CDS: -0.32 Total: 43.87 kcal Atomic # 6 Polarization: 12.85 SS G_CDS: 6.78 Total: 19.63 kcal Atomic # 7 Polarization: -119.89 SS G_CDS: -5.16 Total: -125.05 kcal Atomic # 8 Polarization: -57.82 SS G_CDS: -0.12 Total: -57.93 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -78.54 3.20 -75.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492886365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.614 kcal (2) G-P(sol) polarization free energy of solvation -78.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds