Wall clock time and date at job start Tue Mar 31 2020 23:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 119.99777 * 2 1 4 4 H 1.48495 * 109.47237 * 84.42691 * 3 2 1 5 5 H 1.48502 * 109.47060 * 204.42734 * 3 2 1 6 6 H 1.48499 * 109.47160 * 324.42780 * 3 2 1 7 7 C 1.38810 * 120.00051 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00196 * 21.95132 * 7 2 1 9 9 N 1.36935 * 120.00053 * 201.94619 * 7 2 1 10 10 C 1.46500 * 120.00008 * 37.05887 * 9 7 2 11 11 C 1.50705 * 109.46710 * 89.99791 * 10 9 7 12 12 C 1.34515 * 125.78517 * 90.00683 * 11 10 9 13 13 C 1.41387 * 106.84075 * 179.97438 * 12 11 10 14 14 C 1.34519 * 106.83837 * 359.97438 * 13 12 11 15 15 S 1.76198 * 125.78533 * 180.02562 * 14 13 12 16 16 O 1.42107 * 106.39962 * 203.53465 * 15 14 13 17 17 O 1.42094 * 106.40542 * 336.45835 * 15 14 13 18 18 N 1.65602 * 107.21724 * 90.00057 * 15 14 13 19 19 C 1.47023 * 125.64683 * 269.68984 * 18 15 14 20 20 C 1.54321 * 107.27518 * 180.97095 * 19 18 15 21 21 C 1.55159 * 102.86522 * 22.52137 * 20 19 18 22 22 C 1.47425 * 125.64872 * 89.99850 * 18 15 14 23 23 O 1.34300 * 125.79135 * 269.69135 * 11 10 9 24 24 C 1.46503 * 120.00210 * 217.06263 * 9 7 2 25 25 C 1.52998 * 117.49518 * 14.15015 * 24 9 7 26 26 C 1.52996 * 117.49738 * 305.48932 * 24 9 7 27 27 H 0.96996 * 120.00427 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47734 * 210.00099 * 10 9 7 29 29 H 1.09005 * 109.46827 * 330.00832 * 10 9 7 30 30 H 1.08001 * 126.58102 * 0.03091 * 12 11 10 31 31 H 1.07997 * 126.58119 * 180.02562 * 13 12 11 32 32 H 1.09004 * 109.88175 * 300.50965 * 19 18 15 33 33 H 1.08997 * 109.88492 * 61.67975 * 19 18 15 34 34 H 1.08999 * 110.91819 * 264.10930 * 20 19 18 35 35 H 1.09000 * 110.58918 * 140.78403 * 20 19 18 36 36 H 1.08998 * 111.00627 * 206.23181 * 21 20 19 37 37 H 1.09003 * 110.99796 * 82.37554 * 21 20 19 38 38 H 1.09008 * 110.36670 * 274.66733 * 22 18 15 39 39 H 1.09003 * 110.36983 * 36.88249 * 22 18 15 40 40 H 1.09002 * 115.54956 * 159.81850 * 24 9 7 41 41 H 1.08993 * 117.50604 * 359.97438 * 25 24 9 42 42 H 1.09003 * 117.49485 * 145.02050 * 25 24 9 43 43 H 1.08994 * 117.49611 * 214.97581 * 26 24 9 44 44 H 1.08994 * 117.50069 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3799 2.1144 1.3934 5 1 3.6017 1.4091 -0.5790 6 1 1.5114 2.6158 -0.8145 7 6 2.0103 -1.2021 -0.0005 8 1 1.5291 -2.1034 -0.3506 9 7 3.3052 -1.2453 0.4427 10 6 3.7187 -0.4175 1.5785 11 6 3.5203 -1.1868 2.8591 12 6 4.4305 -1.9839 3.4470 13 6 3.8281 -2.4996 4.6176 14 6 2.5861 -1.9863 4.6753 15 16 1.3982 -2.3025 5.9377 16 8 0.1239 -2.0494 5.3619 17 8 1.7541 -3.5485 6.5206 18 7 1.6159 -1.1569 7.1135 19 6 2.5029 -1.2832 8.2791 20 6 2.3614 0.0125 9.1053 21 6 0.9752 0.5532 8.6653 22 6 0.9474 0.1560 7.1682 23 8 2.4069 -1.1881 3.6101 24 6 4.2772 -2.1192 -0.2191 25 6 3.8924 -2.6999 -1.5812 26 6 3.9229 -3.6022 -0.3450 27 1 -0.4850 0.8400 0.0004 28 1 4.7710 -0.1541 1.4722 29 1 3.1173 0.4912 1.6037 30 1 5.4299 -2.1897 3.0932 31 1 4.2790 -3.1753 5.3293 32 1 2.2052 -2.1425 8.8801 33 1 3.5351 -1.3990 7.9487 34 1 3.1496 0.7223 8.8540 35 1 2.3675 -0.2105 10.1722 36 1 0.9224 1.6354 8.7835 37 1 0.1721 0.0620 9.2147 38 1 1.4953 0.8858 6.5720 39 1 -0.0805 0.0734 6.8149 40 1 5.3247 -1.8638 -0.0585 41 1 2.9160 -2.4323 -1.9849 42 1 4.6868 -2.8271 -2.3167 43 1 4.7373 -4.3225 -0.2677 44 1 2.9669 -3.9278 0.0648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519193851.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:09 Heat of formation + Delta-G solvation = -16.655611 kcal Electronic energy + Delta-G solvation = -28436.638538 eV Core-core repulsion = 24484.040720 eV Total energy + Delta-G solvation = -3952.597818 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.61710 -39.31465 -39.05193 -38.62282 -37.25796 -35.62443 -34.26945 -33.67219 -31.95714 -31.16127 -29.95365 -27.62041 -25.88167 -23.71307 -23.13916 -23.03251 -22.24789 -22.08882 -21.64117 -20.38983 -19.56074 -18.94769 -18.54348 -17.64420 -17.31584 -17.24123 -16.75496 -16.67264 -16.23607 -15.51091 -14.98123 -14.84054 -14.78059 -14.75235 -14.35384 -14.29316 -14.10627 -13.94185 -13.69296 -13.62209 -13.55061 -13.44895 -12.92228 -12.84869 -12.78748 -12.65162 -12.28060 -12.16613 -12.08526 -12.04681 -11.89813 -11.53991 -11.50200 -11.12383 -11.05016 -10.68742 -10.20053 -9.92690 -8.84396 -8.28746 -5.73056 -1.01147 0.09747 1.23370 1.32611 1.39640 1.47934 1.70672 2.06893 2.33477 2.44388 2.90281 3.11152 3.12834 3.33006 3.57565 3.73608 3.84029 3.87828 4.10345 4.16086 4.22890 4.32485 4.33172 4.37437 4.41896 4.50957 4.52059 4.56880 4.69062 4.75596 4.86755 4.90385 4.95926 4.96633 4.97105 5.02078 5.15706 5.25085 5.33217 5.40126 5.43545 5.50462 5.80796 5.93471 6.10006 6.81220 7.46331 7.81570 8.90151 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014204 B = 0.004004 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.846249 B = 6990.726612 C = 7778.995133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.018 4.018 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.234 1.234 6 H -0.303 1.303 7 C -0.270 4.270 8 H 0.033 0.967 9 N -0.570 5.570 10 C 0.188 3.812 11 C 0.027 3.973 12 C -0.226 4.226 13 C -0.076 4.076 14 C -0.628 4.628 15 S 2.754 3.246 16 O -0.984 6.984 17 O -0.950 6.950 18 N -1.003 6.003 19 C 0.101 3.899 20 C -0.119 4.119 21 C -0.120 4.120 22 C 0.097 3.903 23 O -0.150 6.150 24 C 0.108 3.892 25 C -0.186 4.186 26 C -0.212 4.212 27 H 0.266 0.734 28 H 0.137 0.863 29 H 0.052 0.948 30 H 0.192 0.808 31 H 0.193 0.807 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.146 0.854 41 H 0.064 0.936 42 H 0.120 0.880 43 H 0.116 0.884 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.768 1.739 18.311 22.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.215 4.215 3 Si 0.768 3.232 4 H -0.199 1.199 5 H -0.157 1.157 6 H -0.231 1.231 7 C -0.399 4.399 8 H 0.051 0.949 9 N -0.288 5.288 10 C 0.063 3.937 11 C -0.031 4.031 12 C -0.246 4.246 13 C -0.097 4.097 14 C -0.758 4.758 15 S 2.841 3.159 16 O -0.975 6.975 17 O -0.941 6.941 18 N -0.845 5.845 19 C -0.023 4.023 20 C -0.158 4.158 21 C -0.159 4.159 22 C -0.027 4.027 23 O -0.045 6.045 24 C 0.002 3.998 25 C -0.224 4.224 26 C -0.253 4.253 27 H 0.075 0.925 28 H 0.154 0.846 29 H 0.070 0.930 30 H 0.209 0.791 31 H 0.210 0.790 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.163 0.837 41 H 0.082 0.918 42 H 0.138 0.862 43 H 0.135 0.865 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.739 1.277 18.101 22.171 hybrid contribution -0.252 0.532 -0.890 1.067 sum 12.487 1.810 17.211 21.340 Atomic orbital electron populations 1.70031 1.08204 1.27926 1.52185 1.26181 0.95682 1.01989 0.97698 0.85890 0.80559 0.79168 0.77607 1.19919 1.15678 1.23085 1.18390 0.87964 0.93089 1.40488 0.94931 1.43780 1.07204 1.48936 1.28844 1.20420 1.01995 0.91877 0.79440 1.25211 0.83867 1.00026 0.93998 1.22086 1.02924 1.02538 0.97075 1.22284 0.91260 0.97404 0.98722 1.35840 1.18260 1.12671 1.09076 1.00178 0.71861 0.72535 0.71338 1.93557 1.39760 1.85673 1.78479 1.93570 1.84818 1.39494 1.76195 1.58475 1.57602 1.32072 1.36391 1.22195 0.93491 1.01121 0.85454 1.22674 0.97405 0.94893 1.00789 1.22797 0.98427 1.02969 0.91733 1.22409 0.97230 0.82480 1.00628 1.84263 1.38271 1.52794 1.29125 1.21600 0.93192 0.89020 0.96016 1.23137 1.02731 1.04697 0.91824 1.23283 1.01863 0.96380 1.03725 0.92526 0.84571 0.92988 0.79128 0.78965 0.90036 0.90309 0.89419 0.87452 0.87635 0.89866 0.91211 0.91153 0.83675 0.91751 0.86177 0.86548 0.93576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.07 13.97 21.65 0.30 -60.77 16 2 C -0.02 -1.06 5.31 84.86 0.45 -0.61 16 3 Si 0.94 44.58 24.98 68.60 1.71 46.29 16 4 H -0.27 -12.30 6.68 99.48 0.66 -11.63 16 5 H -0.23 -9.84 7.11 99.48 0.71 -9.13 16 6 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 7 C -0.27 -15.54 8.53 84.03 0.72 -14.83 16 8 H 0.03 2.16 7.32 -2.91 -0.02 2.14 16 9 N -0.57 -26.01 2.43 -682.33 -1.66 -27.67 16 10 C 0.19 7.55 5.07 85.63 0.43 7.99 16 11 C 0.03 1.09 6.90 24.83 0.17 1.26 16 12 C -0.23 -7.12 10.81 22.19 0.24 -6.88 16 13 C -0.08 -2.36 10.63 22.19 0.24 -2.12 16 14 C -0.63 -23.82 7.36 66.97 0.49 -23.33 16 15 S 2.75 95.26 6.09 -56.49 -0.34 94.92 16 16 O -0.98 -43.73 17.34 -127.96 -2.22 -45.95 16 17 O -0.95 -32.80 17.41 -128.00 -2.23 -35.03 16 18 N -1.00 -25.04 3.70 -506.41 -1.87 -26.91 16 19 C 0.10 1.67 6.98 86.73 0.61 2.28 16 20 C -0.12 -1.24 6.95 31.78 0.22 -1.02 16 21 C -0.12 -1.57 7.08 31.99 0.23 -1.34 16 22 C 0.10 2.16 7.11 86.86 0.62 2.78 16 23 O -0.15 -7.00 10.65 -2.50 -0.03 -7.03 16 24 C 0.11 3.90 6.61 44.99 0.30 4.20 16 25 C -0.19 -6.68 9.81 30.62 0.30 -6.38 16 26 C -0.21 -7.62 10.08 30.62 0.31 -7.32 16 27 H 0.27 16.25 8.31 -92.71 -0.77 15.47 16 28 H 0.14 3.96 8.04 -2.39 -0.02 3.94 16 29 H 0.05 2.33 3.17 -2.38 -0.01 2.32 16 30 H 0.19 4.32 8.06 -2.91 -0.02 4.30 16 31 H 0.19 4.37 8.06 -2.91 -0.02 4.35 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.07 1.79 7.78 -2.39 -0.02 1.77 16 40 H 0.15 3.85 8.10 -2.39 -0.02 3.83 16 41 H 0.06 2.86 6.94 -2.39 -0.02 2.84 16 42 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16 43 H 0.12 3.25 8.14 -2.39 -0.02 3.23 16 44 H 0.05 2.04 8.00 -2.39 -0.02 2.02 16 Total: -1.00 -85.38 373.77 -0.05 -85.44 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 0.96 Total: 22.03 kcal Atomic # 6 Polarization: -50.63 SS G_CDS: 5.32 Total: -45.31 kcal Atomic # 7 Polarization: -112.12 SS G_CDS: -3.23 Total: -115.35 kcal Atomic # 8 Polarization: -83.54 SS G_CDS: -4.47 Total: -88.01 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.71 Total: 46.29 kcal Atomic # 16 Polarization: 95.26 SS G_CDS: -0.34 Total: 94.92 kcal Total: -85.38 -0.05 -85.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519193851.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.780 kcal (2) G-P(sol) polarization free energy of solvation -85.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds