Wall clock time and date at job start Tue Mar 31 2020 22:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86803 * 119.99946 * 2 1 4 4 H 1.48505 * 109.46988 * 239.99832 * 3 2 1 5 5 H 1.48501 * 109.47242 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47217 * 119.99872 * 3 2 1 7 7 C 1.40034 * 120.00248 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99686 * 170.21300 * 7 2 1 9 9 C 1.41537 * 119.99706 * 350.22143 * 7 2 1 10 10 C 1.41179 * 120.99763 * 151.69186 * 9 7 2 11 11 C 1.37587 * 119.02348 * 180.02562 * 10 9 7 12 12 N 1.32085 * 121.10946 * 359.72023 * 11 10 9 13 13 C 1.32478 * 122.22620 * 0.57434 * 12 11 10 14 14 N 1.39391 * 119.57943 * 179.70841 * 13 12 11 15 15 C 1.34777 * 119.99626 * 5.09748 * 14 13 12 16 16 O 1.21553 * 120.00601 * 354.96231 * 15 14 13 17 17 C 1.47811 * 119.99840 * 174.96585 * 15 14 13 18 18 C 1.39589 * 120.14879 * 179.97438 * 17 15 14 19 19 C 1.37947 * 119.85236 * 179.97438 * 18 17 15 20 20 C 1.38368 * 120.14754 * 359.97438 * 19 18 17 21 21 C 1.50703 * 119.85234 * 179.72921 * 20 19 18 22 22 N 1.46493 * 109.47190 * 89.99752 * 21 20 19 23 23 C 1.34783 * 120.00133 * 180.02562 * 22 21 20 24 24 N 1.34768 * 120.00224 * 179.97438 * 23 22 21 25 25 O 1.21588 * 119.99528 * 0.02562 * 23 22 21 26 26 C 1.38358 * 120.29247 * 359.97438 * 20 19 18 27 27 C 1.37955 * 120.15052 * 0.02562 * 26 20 19 28 28 C 1.38619 * 120.83951 * 359.42655 * 13 12 11 29 29 H 0.97000 * 119.99721 * 0.02562 * 1 2 3 30 30 H 1.08005 * 120.48712 * 359.97438 * 10 9 7 31 31 H 1.07999 * 119.44458 * 179.97438 * 11 10 9 32 32 H 0.96999 * 119.99856 * 185.10177 * 14 13 12 33 33 H 1.07997 * 120.07040 * 359.95146 * 18 17 15 34 34 H 1.08007 * 119.92706 * 179.97438 * 19 18 17 35 35 H 1.08992 * 109.46601 * 209.99959 * 21 20 19 36 36 H 1.09002 * 109.46768 * 329.99618 * 21 20 19 37 37 H 0.96999 * 120.00195 * 359.97438 * 22 21 20 38 38 H 0.96999 * 120.00104 * 359.97438 * 24 23 22 39 39 H 0.96999 * 120.00212 * 179.97438 * 24 23 22 40 40 H 1.08008 * 119.92232 * 179.97438 * 26 20 19 41 41 H 1.08001 * 120.07235 * 179.97438 * 27 26 20 42 42 H 1.08005 * 120.60485 * 180.29857 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2764 2.7465 -0.0006 6 1 3.0951 1.6965 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0758 -1.2195 -0.1584 9 6 1.3153 -2.4294 0.2093 10 6 1.7913 -3.6401 -0.3393 11 6 1.0859 -4.7992 -0.1112 12 7 -0.0187 -4.7945 0.6129 13 6 -0.5101 -3.6852 1.1448 14 7 -1.6837 -3.7429 1.8948 15 6 -2.2550 -4.9341 2.1615 16 8 -1.7998 -5.9496 1.6727 17 6 -3.4352 -5.0055 3.0485 18 6 -4.0297 -6.2375 3.3265 19 6 -5.1306 -6.2972 4.1556 20 6 -5.6454 -5.1395 4.7116 21 6 -6.8520 -5.2117 5.6116 22 7 -6.4167 -5.3938 6.9984 23 6 -7.3304 -5.4861 7.9850 24 7 -6.9300 -5.6541 9.2608 25 8 -8.5160 -5.4187 7.7237 26 6 -5.0603 -3.9153 4.4410 27 6 -3.9589 -3.8415 3.6136 28 6 0.1310 -2.4687 0.9698 29 1 -0.4850 0.8401 -0.0004 30 1 2.6954 -3.6561 -0.9299 31 1 1.4436 -5.7291 -0.5280 32 1 -2.0891 -2.9257 2.2246 33 1 -3.6288 -7.1419 2.8932 34 1 -5.5918 -7.2498 4.3712 35 1 -7.4231 -4.2871 5.5284 36 1 -7.4776 -6.0532 5.3136 37 1 -5.4709 -5.4486 7.2067 38 1 -5.9842 -5.7090 9.4690 39 1 -7.5875 -5.7202 9.9708 40 1 -5.4673 -3.0153 4.8780 41 1 -3.5034 -2.8851 3.4029 42 1 -0.2703 -1.5674 1.4092 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532180861.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:47 Heat of formation + Delta-G solvation = -3.307368 kcal Electronic energy + Delta-G solvation = -27118.801120 eV Core-core repulsion = 23063.630924 eV Total energy + Delta-G solvation = -4055.170195 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.45233 -39.96999 -38.89213 -37.63510 -35.13869 -34.44107 -34.00429 -33.82610 -31.54503 -31.16805 -30.56475 -28.71273 -26.63800 -26.03241 -23.14738 -22.85936 -22.00593 -21.52359 -21.22106 -19.81257 -18.74602 -18.06923 -17.71074 -17.60761 -16.15295 -15.72755 -15.56253 -15.31688 -15.20659 -15.03910 -14.75171 -14.65577 -14.32184 -14.25744 -13.88763 -13.72787 -13.41130 -12.96758 -12.86167 -12.76952 -12.61976 -12.22347 -11.74990 -11.47123 -11.25836 -11.24954 -10.95984 -10.71633 -10.35023 -10.22529 -10.08715 -9.81706 -9.56009 -9.43279 -9.40870 -9.19489 -9.06007 -8.01961 -7.81184 -7.10791 -6.80964 -4.67516 0.60735 1.17051 2.43801 2.66862 2.76392 2.86706 2.98246 3.01072 3.13874 3.28851 3.49104 3.82104 3.92502 4.17102 4.28241 4.53968 4.64782 4.71907 4.88022 5.02436 5.14633 5.31291 5.43177 5.58809 5.61703 5.78243 5.88627 6.02875 6.08059 6.22302 6.25670 6.32259 6.50751 6.53259 6.56810 6.66038 6.74385 6.89495 7.06309 7.30833 7.39009 7.57003 7.70498 7.87179 8.13355 8.25612 8.35589 8.63412 8.70112 8.77626 9.60403 10.06278 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015695 B = 0.002081 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.523896 B =13451.244068 C =14776.103931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.076 3.924 3 Si 0.915 3.085 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.456 4.456 8 H 0.081 0.919 9 C 0.143 3.857 10 C -0.279 4.279 11 C 0.117 3.883 12 N -0.552 5.552 13 C 0.334 3.666 14 N -0.651 5.651 15 C 0.538 3.462 16 O -0.475 6.475 17 C -0.111 4.111 18 C -0.065 4.065 19 C -0.107 4.107 20 C -0.098 4.098 21 C 0.179 3.821 22 N -0.741 5.741 23 C 0.705 3.295 24 N -0.868 5.868 25 O -0.596 6.596 26 C -0.105 4.105 27 C -0.091 4.091 28 C -0.235 4.235 29 H 0.282 0.718 30 H 0.103 0.897 31 H 0.125 0.875 32 H 0.407 0.593 33 H 0.139 0.861 34 H 0.130 0.870 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.399 0.601 38 H 0.397 0.603 39 H 0.415 0.585 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.614 -4.800 14.476 18.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.142 4.142 3 Si 0.739 3.261 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.488 4.488 8 H 0.100 0.900 9 C 0.135 3.865 10 C -0.303 4.303 11 C -0.037 4.037 12 N -0.271 5.271 13 C 0.109 3.891 14 N -0.297 5.297 15 C 0.323 3.677 16 O -0.346 6.346 17 C -0.115 4.115 18 C -0.083 4.083 19 C -0.125 4.125 20 C -0.098 4.098 21 C 0.056 3.944 22 N -0.397 5.397 23 C 0.403 3.597 24 N -0.436 5.436 25 O -0.474 6.474 26 C -0.124 4.124 27 C -0.110 4.110 28 C -0.260 4.260 29 H 0.093 0.907 30 H 0.122 0.878 31 H 0.142 0.858 32 H 0.243 0.757 33 H 0.157 0.843 34 H 0.148 0.852 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.233 0.767 38 H 0.225 0.775 39 H 0.247 0.753 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.965 -6.128 13.884 19.326 hybrid contribution 1.274 2.070 0.402 2.464 sum -10.691 -4.058 14.285 18.299 Atomic orbital electron populations 1.69731 1.07555 1.29375 1.35601 1.25939 0.94890 1.01413 0.91990 0.86255 0.79986 0.79782 0.80053 1.18898 1.20258 1.18781 1.19531 0.95830 0.89970 1.43453 0.90044 1.17582 0.90200 0.92301 0.86428 1.21960 1.04483 0.94583 1.09257 1.21781 0.90713 0.96584 0.94634 1.67215 1.15547 1.28112 1.16197 1.18169 0.86676 0.91059 0.93196 1.43324 1.24838 1.08919 1.52639 1.18339 0.83413 0.84211 0.81747 1.90857 1.61446 1.33694 1.48573 1.20296 0.97109 0.94530 0.99551 1.21307 0.94026 0.97590 0.95424 1.21053 0.96204 0.98032 0.97250 1.19988 0.97101 0.93774 0.98975 1.20068 0.93328 1.03041 0.77989 1.45165 1.09103 1.79066 1.06394 1.15969 0.85140 0.77549 0.81037 1.42990 1.11945 1.81399 1.07283 1.90984 1.15377 1.58341 1.82732 1.21010 0.95758 0.97374 0.98237 1.21411 0.95785 0.97849 0.95908 1.21601 1.01402 0.95350 1.07663 0.90716 0.87849 0.85760 0.75659 0.84308 0.85242 0.90421 0.90441 0.76664 0.77480 0.75349 0.85232 0.85156 0.85253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.22 10.83 55.55 0.60 -18.62 16 2 C 0.08 1.79 5.30 -17.34 -0.09 1.70 16 3 Si 0.91 17.62 29.57 -169.99 -5.03 12.59 16 4 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 5 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 7 C -0.46 -11.49 9.13 -37.65 -0.34 -11.83 16 8 H 0.08 1.96 7.87 -52.49 -0.41 1.54 16 9 C 0.14 3.69 5.58 -106.55 -0.59 3.10 16 10 C -0.28 -6.72 9.90 -38.70 -0.38 -7.10 16 11 C 0.12 2.77 11.15 -17.68 -0.20 2.57 16 12 N -0.55 -13.86 7.85 -12.54 -0.10 -13.96 16 13 C 0.33 7.94 7.41 -154.77 -1.15 6.79 16 14 N -0.65 -12.52 5.33 -12.36 -0.07 -12.58 16 15 C 0.54 10.06 7.73 -12.34 -0.10 9.96 16 16 O -0.47 -10.73 14.60 5.32 0.08 -10.65 16 17 C -0.11 -1.54 5.87 -104.97 -0.62 -2.15 16 18 C -0.06 -0.78 9.60 -39.18 -0.38 -1.16 16 19 C -0.11 -0.99 9.68 -39.64 -0.38 -1.37 16 20 C -0.10 -0.83 5.25 -104.53 -0.55 -1.38 16 21 C 0.18 1.43 5.79 -5.20 -0.03 1.40 16 22 N -0.74 -5.25 5.55 -66.42 -0.37 -5.62 16 23 C 0.70 6.36 8.84 -86.92 -0.77 5.59 16 24 N -0.87 -4.22 8.88 27.63 0.25 -3.97 16 25 O -0.60 -8.18 17.18 5.29 0.09 -8.09 16 26 C -0.11 -0.93 9.68 -39.64 -0.38 -1.32 16 27 C -0.09 -0.99 9.54 -39.18 -0.37 -1.36 16 28 C -0.23 -5.81 8.59 -38.47 -0.33 -6.14 16 29 H 0.28 6.18 8.29 -40.82 -0.34 5.84 16 30 H 0.10 2.28 8.06 -52.48 -0.42 1.85 16 31 H 0.12 2.55 8.06 -52.49 -0.42 2.13 16 32 H 0.41 6.40 6.75 -40.82 -0.28 6.12 16 33 H 0.14 1.74 7.65 -52.49 -0.40 1.34 16 34 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 35 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 36 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 37 H 0.40 2.03 8.48 -40.82 -0.35 1.69 16 38 H 0.40 0.80 8.84 -40.82 -0.36 0.44 16 39 H 0.41 1.67 8.93 -40.82 -0.36 1.31 16 40 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 41 H 0.13 1.25 6.42 -52.49 -0.34 0.92 16 42 H 0.13 3.16 6.27 -52.48 -0.33 2.83 16 LS Contribution 368.03 15.07 5.55 5.55 Total: -1.00 -34.54 368.03 -10.15 -44.70 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -4.49 Total: 13.36 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -6.66 Total: -2.70 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: 0.31 Total: -54.76 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: 0.17 Total: -18.75 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.03 Total: 12.59 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.54 -10.15 -44.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532180861.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.392 kcal (2) G-P(sol) polarization free energy of solvation -34.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds