Wall clock time and date at job start Wed Apr 1 2020 00:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38382 * 119.92724 * 2 1 4 4 C 1.38337 * 120.29403 * 179.97438 * 3 2 1 5 5 C 1.37983 * 120.14338 * 359.78096 * 4 3 2 6 6 S 1.76199 * 120.07535 * 180.23473 * 5 4 3 7 7 N 1.65594 * 107.21667 * 114.45378 * 6 5 4 8 8 O 1.42101 * 106.40126 * 227.99503 * 6 5 4 9 9 O 1.42099 * 106.39751 * 0.91395 * 6 5 4 10 10 C 1.39557 * 119.84738 * 0.49708 * 5 4 3 11 11 C 1.47855 * 120.14035 * 179.76696 * 10 5 4 12 12 O 1.21549 * 120.00140 * 60.74025 * 11 10 5 13 13 N 1.34778 * 119.99549 * 240.73921 * 11 10 5 14 14 C 1.46503 * 120.00068 * 354.74174 * 13 11 10 15 15 C 1.50696 * 109.47039 * 90.00247 * 14 13 11 16 16 H 1.07997 * 120.00490 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99851 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99959 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99954 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47345 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47486 * 119.99839 * 19 17 15 22 22 H 1.48502 * 109.46918 * 240.00073 * 19 17 15 23 23 C 1.46502 * 119.99676 * 174.74089 * 13 11 10 24 24 C 1.53000 * 109.47094 * 304.00798 * 23 13 11 25 25 C 1.52996 * 109.47321 * 64.00944 * 23 13 11 26 26 C 1.37936 * 119.92640 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47266 * 269.97846 * 1 2 3 28 28 H 1.09001 * 109.46881 * 29.98053 * 1 2 3 29 29 H 1.08995 * 109.46999 * 149.97788 * 1 2 3 30 30 H 1.08005 * 119.85224 * 359.97438 * 3 2 1 31 31 H 1.07999 * 119.92943 * 180.02562 * 4 3 2 32 32 H 0.97000 * 120.00206 * 0.02562 * 7 6 5 33 33 H 0.97007 * 119.99926 * 179.97438 * 7 6 5 34 34 H 1.09006 * 109.46912 * 209.99825 * 14 13 11 35 35 H 1.09000 * 109.47287 * 329.99862 * 14 13 11 36 36 H 0.96996 * 119.99876 * 180.02562 * 18 17 15 37 37 H 1.08997 * 109.46897 * 184.01070 * 23 13 11 38 38 H 1.09005 * 109.46887 * 65.75926 * 24 23 13 39 39 H 1.09002 * 109.47235 * 185.75644 * 24 23 13 40 40 H 1.09002 * 109.47595 * 305.76316 * 24 23 13 41 41 H 1.09004 * 109.47195 * 64.66855 * 25 23 13 42 42 H 1.08993 * 109.47340 * 184.67154 * 25 23 13 43 43 H 1.09005 * 109.46718 * 304.66895 * 25 23 13 44 44 H 1.07999 * 120.07362 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1975 1.1993 0.0000 4 6 3.5808 1.2082 0.0005 5 6 4.2813 0.0194 0.0056 6 16 6.0433 0.0328 0.0126 7 7 6.5327 -0.6154 1.4556 8 8 6.4554 -0.8784 -0.9970 9 8 6.4340 1.3988 0.0331 10 6 3.5912 -1.1936 -0.0002 11 6 4.3353 -2.4712 0.0000 12 8 5.0818 -2.7396 0.9209 13 7 4.1859 -3.3382 -1.0211 14 6 3.2016 -3.0691 -2.0724 15 6 3.8498 -2.2725 -3.1753 16 1 4.8905 -1.9941 -3.1004 17 6 3.1140 -1.8991 -4.2799 18 7 1.8467 -2.2386 -4.3713 19 14 3.9172 -0.9111 -5.6467 20 1 5.3401 -0.6589 -5.3048 21 1 3.8409 -1.6730 -6.9190 22 1 3.2089 0.3848 -5.8025 23 6 5.0077 -4.5496 -1.0796 24 6 6.4878 -4.1643 -1.0376 25 6 4.6800 -5.4464 0.1159 26 6 2.1952 -1.1954 -0.0005 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6538 2.1326 -0.0004 31 1 4.1136 2.1475 0.0009 32 1 5.8736 -0.9142 2.1015 33 1 7.4786 -0.6970 1.6547 34 1 2.8324 -4.0127 -2.4745 35 1 2.3699 -2.5018 -1.6549 36 1 1.3292 -1.9763 -5.1486 37 1 4.7981 -5.0864 -2.0047 38 1 6.7199 -3.7188 -0.0702 39 1 7.0993 -5.0547 -1.1838 40 1 6.6986 -3.4448 -1.8288 41 1 3.6477 -5.7883 0.0415 42 1 5.3486 -6.3072 0.1184 43 1 4.8104 -4.8824 1.0396 44 1 1.6552 -2.1307 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000536605425.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:46 Heat of formation + Delta-G solvation = -103.075031 kcal Electronic energy + Delta-G solvation = -30057.094860 eV Core-core repulsion = 26100.749615 eV Total energy + Delta-G solvation = -3956.345245 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.57885 -39.75897 -38.13942 -37.08799 -36.86820 -35.07521 -34.08312 -33.91438 -33.50579 -31.69197 -28.90420 -28.28513 -27.93615 -25.61108 -24.44263 -23.60567 -22.49847 -20.71002 -19.96428 -19.11975 -18.53299 -18.34532 -17.82648 -17.30269 -16.93873 -16.92479 -16.42927 -16.06969 -15.72471 -15.43628 -15.31692 -14.83099 -14.77170 -14.47166 -14.29776 -13.93860 -13.58340 -13.32996 -13.29300 -13.22769 -13.14167 -13.12821 -13.03153 -12.99244 -12.76630 -12.68270 -12.68208 -12.51769 -12.13739 -12.08579 -11.82863 -11.72727 -11.55397 -11.19107 -10.65186 -10.49913 -10.08193 -9.96129 -9.40218 -8.19298 -6.27847 -0.58321 -0.31997 0.12667 1.31403 1.35599 1.47431 1.58914 2.11132 2.20420 2.39748 2.48738 2.74334 3.10899 3.38328 3.51380 3.83637 3.87913 4.10481 4.23326 4.31482 4.33180 4.43804 4.51278 4.61708 4.73758 4.82842 4.85633 4.87435 4.96711 5.00605 5.02314 5.07331 5.11588 5.19128 5.22722 5.32103 5.38432 5.42305 5.56820 5.74267 5.80469 5.90990 6.10859 6.41686 6.55577 6.86381 7.18002 7.41744 8.86215 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008323 B = 0.007067 C = 0.005987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3363.201834 B = 3961.195279 C = 4675.744422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.030 4.030 3 C -0.128 4.128 4 C -0.032 4.032 5 C -0.657 4.657 6 S 2.703 3.297 7 N -1.219 6.219 8 O -0.984 6.984 9 O -0.997 6.997 10 C -0.019 4.019 11 C 0.543 3.457 12 O -0.550 6.550 13 N -0.572 5.572 14 C 0.236 3.764 15 C -0.533 4.533 16 H 0.048 0.952 17 C 0.029 3.971 18 N -0.913 5.913 19 Si 0.929 3.071 20 H -0.281 1.281 21 H -0.272 1.272 22 H -0.274 1.274 23 C 0.136 3.864 24 C -0.154 4.154 25 C -0.153 4.153 26 C -0.114 4.114 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.172 0.828 31 H 0.160 0.840 32 H 0.427 0.573 33 H 0.425 0.575 34 H 0.024 0.976 35 H 0.048 0.952 36 H 0.266 0.734 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.034 0.966 41 H 0.052 0.948 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.082 2.644 12.792 13.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.030 4.030 3 C -0.146 4.146 4 C -0.051 4.051 5 C -0.747 4.747 6 S 2.793 3.207 7 N -0.900 5.900 8 O -0.972 6.972 9 O -0.987 6.987 10 C -0.023 4.023 11 C 0.330 3.670 12 O -0.432 6.432 13 N -0.300 5.300 14 C 0.115 3.885 15 C -0.571 4.571 16 H 0.067 0.933 17 C -0.171 4.171 18 N -0.553 5.553 19 Si 0.755 3.245 20 H -0.206 1.206 21 H -0.197 1.197 22 H -0.199 1.199 23 C 0.034 3.966 24 C -0.212 4.212 25 C -0.211 4.211 26 C -0.134 4.134 27 H 0.121 0.879 28 H 0.107 0.893 29 H 0.086 0.914 30 H 0.189 0.811 31 H 0.178 0.822 32 H 0.257 0.743 33 H 0.257 0.743 34 H 0.042 0.958 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.054 0.946 41 H 0.071 0.929 42 H 0.102 0.898 43 H 0.084 0.916 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.353 2.851 12.240 12.573 hybrid contribution -0.129 0.073 -0.853 0.866 sum -0.482 2.924 11.387 11.767 Atomic orbital electron populations 1.20993 0.87809 1.04314 1.04279 1.20566 0.98457 0.92297 0.91667 1.21646 0.93465 0.99253 1.00286 1.21166 0.95737 0.96209 0.91982 1.30308 1.25304 0.98836 1.20232 1.01095 0.73162 0.73094 0.73321 1.52476 1.17774 1.82692 1.37027 1.93635 1.80807 1.64640 1.58166 1.93517 1.81729 1.36280 1.87129 1.19583 0.95373 0.91909 0.95457 1.18412 0.81892 0.83936 0.82781 1.90625 1.39587 1.77183 1.35794 1.48120 1.37911 1.21229 1.22760 1.19461 0.87560 0.96382 0.85055 1.21730 0.97224 1.34093 1.04101 0.93328 1.25399 0.95278 0.96785 0.99664 1.69967 1.07668 1.47140 1.30507 0.85935 0.78801 0.79430 0.80286 1.20644 1.19743 1.19891 1.21165 0.91002 0.84776 0.99679 1.22045 0.94931 1.01399 1.02801 1.22100 1.01623 0.99288 0.98090 1.21305 0.92083 0.99618 1.00348 0.87918 0.89271 0.91396 0.81097 0.82249 0.74278 0.74341 0.95807 0.93381 0.92498 0.90243 0.91278 0.90432 0.94628 0.92853 0.89801 0.91574 0.84727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 10.01 71.24 0.71 -1.69 16 2 C -0.03 -0.84 5.87 -19.90 -0.12 -0.95 16 3 C -0.13 -3.36 9.69 22.33 0.22 -3.14 16 4 C -0.03 -0.98 9.54 22.23 0.21 -0.76 16 5 C -0.66 -23.86 5.91 22.53 0.13 -23.73 16 6 S 2.70 98.37 5.54 -56.49 -0.31 98.05 16 7 N -1.22 -33.43 8.21 37.02 0.30 -33.12 16 8 O -0.98 -44.21 16.64 -127.97 -2.13 -46.34 16 9 O -1.00 -37.98 16.97 -128.00 -2.17 -40.15 16 10 C -0.02 -0.73 4.95 -20.09 -0.10 -0.83 16 11 C 0.54 21.98 4.74 86.79 0.41 22.39 16 12 O -0.55 -20.94 10.44 -3.87 -0.04 -20.99 16 13 N -0.57 -24.42 2.41 -805.52 -1.94 -26.35 16 14 C 0.24 11.46 4.87 85.63 0.42 11.88 16 15 C -0.53 -29.34 9.38 25.60 0.24 -29.10 16 16 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 17 C 0.03 1.58 5.46 84.66 0.46 2.04 16 18 N -0.91 -50.26 13.29 21.45 0.28 -49.98 16 19 Si 0.93 44.56 29.54 68.60 2.03 46.58 16 20 H -0.28 -14.04 7.11 99.48 0.71 -13.33 16 21 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 23 C 0.14 5.13 3.27 44.99 0.15 5.27 16 24 C -0.15 -5.75 8.96 71.98 0.64 -5.11 16 25 C -0.15 -4.65 9.23 71.98 0.66 -3.98 16 26 C -0.11 -3.93 7.34 22.53 0.17 -3.77 16 27 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.09 1.53 8.08 -2.39 -0.02 1.51 16 29 H 0.07 1.53 8.08 -2.39 -0.02 1.51 16 30 H 0.17 3.02 8.06 -2.91 -0.02 3.00 16 31 H 0.16 4.26 7.33 -2.91 -0.02 4.23 16 32 H 0.43 10.68 7.83 -96.75 -0.76 9.92 16 33 H 0.42 9.45 8.96 -96.74 -0.87 8.58 16 34 H 0.02 1.21 7.96 -2.38 -0.02 1.19 16 35 H 0.05 2.32 4.44 -2.39 -0.01 2.31 16 36 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 37 H 0.08 3.03 7.83 -2.39 -0.02 3.01 16 38 H 0.07 2.63 6.25 -2.38 -0.01 2.61 16 39 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.03 1.56 8.09 -2.39 -0.02 1.54 16 41 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.07 2.14 6.18 -2.38 -0.01 2.13 16 44 H 0.13 4.48 7.25 -2.91 -0.02 4.46 16 Total: -1.00 -71.06 368.61 -0.34 -71.40 By element: Atomic # 1 Polarization: 32.95 SS G_CDS: -0.58 Total: 32.38 kcal Atomic # 6 Polarization: -35.69 SS G_CDS: 4.21 Total: -31.48 kcal Atomic # 7 Polarization: -108.11 SS G_CDS: -1.35 Total: -109.46 kcal Atomic # 8 Polarization: -103.13 SS G_CDS: -4.34 Total: -107.47 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: 98.37 SS G_CDS: -0.31 Total: 98.05 kcal Total: -71.06 -0.34 -71.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000536605425.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.676 kcal (2) G-P(sol) polarization free energy of solvation -71.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds