Wall clock time and date at job start Tue Mar 31 2020 23:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86802 * 119.99950 * 2 1 4 4 H 1.48500 * 109.46976 * 270.00055 * 3 2 1 5 5 H 1.48494 * 109.47111 * 29.99921 * 3 2 1 6 6 H 1.48501 * 109.47177 * 150.00043 * 3 2 1 7 7 C 1.40037 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99459 * 179.90383 * 7 2 1 9 9 C 1.41538 * 120.00054 * 359.89364 * 7 2 1 10 10 C 1.41176 * 120.99366 * 147.90247 * 9 7 2 11 11 C 1.37589 * 119.01315 * 180.02562 * 10 9 7 12 12 N 1.32088 * 121.11124 * 359.72916 * 11 10 9 13 13 C 1.32465 * 122.22996 * 0.56644 * 12 11 10 14 14 N 1.39467 * 119.58219 * 179.70422 * 13 12 11 15 15 C 1.34774 * 119.99756 * 354.31515 * 14 13 12 16 16 O 1.21274 * 120.00414 * 4.69369 * 15 14 13 17 17 C 1.50697 * 120.00049 * 184.70074 * 15 14 13 18 18 N 1.46506 * 109.47395 * 179.97438 * 17 15 14 19 19 C 1.38871 * 120.00075 * 179.97438 * 18 17 15 20 20 C 1.38959 * 120.17801 * 353.67720 * 19 18 17 21 21 C 1.37948 * 120.06654 * 179.97438 * 20 19 18 22 22 C 1.38612 * 120.42333 * 359.97438 * 21 20 19 23 23 C 1.37753 * 120.34961 * 359.97438 * 22 21 20 24 24 C 1.39730 * 119.92699 * 0.02562 * 23 22 21 25 25 C 1.47430 * 120.20678 * 179.97438 * 24 23 22 26 26 N 1.34780 * 120.00198 * 5.61502 * 25 24 23 27 27 O 1.21598 * 120.00219 * 185.61219 * 25 24 23 28 28 C 1.38599 * 120.83903 * 359.43446 * 13 12 11 29 29 H 0.96996 * 120.00206 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.49657 * 0.02562 * 10 9 7 31 31 H 1.08006 * 119.44320 * 180.02562 * 11 10 9 32 32 H 0.96996 * 120.00213 * 174.31276 * 14 13 12 33 33 H 1.08997 * 109.47407 * 59.99445 * 17 15 14 34 34 H 1.09001 * 109.47021 * 299.99734 * 17 15 14 35 35 H 0.96998 * 119.99677 * 0.02562 * 18 17 15 36 36 H 1.08003 * 119.96633 * 359.97438 * 20 19 18 37 37 H 1.07999 * 119.79019 * 179.97438 * 21 20 19 38 38 H 1.07997 * 119.82857 * 180.02562 * 22 21 20 39 39 H 1.07998 * 120.03273 * 179.72837 * 23 22 21 40 40 H 0.97001 * 119.99544 * 0.02562 * 26 25 24 41 41 H 0.96996 * 120.00380 * 179.97438 * 26 25 24 42 42 H 1.08000 * 120.60204 * 180.29511 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4388 2.6526 0.7000 6 1 3.5390 1.4402 0.7000 7 6 2.0076 -1.2128 -0.0005 8 1 3.0876 -1.2127 -0.0021 9 6 1.2999 -2.4385 0.0012 10 6 1.8233 -3.5810 -0.6422 11 6 1.1006 -4.7516 -0.6156 12 7 -0.0641 -4.8207 0.0035 13 6 -0.6012 -3.7767 0.6169 14 7 -1.8376 -3.9102 1.2483 15 6 -2.5312 -5.0602 1.1354 16 8 -2.0438 -6.0081 0.5569 17 6 -3.9126 -5.1682 1.7278 18 7 -4.4505 -6.5067 1.4720 19 6 -5.7184 -6.8442 1.9270 20 6 -6.4273 -5.9646 2.7361 21 6 -7.6868 -6.3019 3.1863 22 6 -8.2552 -7.5168 2.8366 23 6 -7.5683 -8.4014 2.0345 24 6 -6.2915 -8.0746 1.5703 25 6 -5.5507 -9.0169 0.7120 26 7 -6.1464 -10.1460 0.2798 27 8 -4.4021 -8.7755 0.3939 28 6 0.0525 -2.5549 0.6440 29 1 -0.4850 0.8400 -0.0004 30 1 2.7766 -3.5369 -1.1476 31 1 1.4947 -5.6299 -1.1052 32 1 -2.1982 -3.1754 1.7688 33 1 -4.5632 -4.4223 1.2712 34 1 -3.8614 -4.9961 2.8029 35 1 -3.9206 -7.1575 0.9856 36 1 -5.9916 -5.0158 3.0128 37 1 -8.2336 -5.6151 3.8153 38 1 -9.2421 -7.7709 3.1941 39 1 -8.0142 -9.3484 1.7688 40 1 -7.0627 -10.3384 0.5332 41 1 -5.6591 -10.7658 -0.2852 42 1 -0.3867 -1.7074 1.1494 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566530256.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:15 Heat of formation + Delta-G solvation = 3.130181 kcal Electronic energy + Delta-G solvation = -27725.886768 eV Core-core repulsion = 23670.995725 eV Total energy + Delta-G solvation = -4054.891042 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.54918 -39.63901 -38.33576 -37.85852 -35.56638 -34.32798 -33.78426 -33.75499 -31.15729 -30.59966 -30.18164 -28.73201 -26.50876 -25.97733 -24.18223 -22.38701 -21.94939 -21.27537 -20.93684 -19.67139 -18.37621 -17.73631 -17.51774 -16.99723 -16.50092 -15.72943 -15.55459 -15.48021 -15.28804 -15.07367 -14.84015 -14.33266 -14.21300 -13.99597 -13.83929 -13.57771 -13.43685 -13.07258 -12.71559 -12.66164 -12.57069 -12.17493 -12.09664 -11.44493 -11.43575 -11.19201 -10.92492 -10.35090 -10.31473 -10.15390 -9.98094 -9.88826 -9.79083 -9.49441 -9.42538 -9.18939 -7.93262 -7.79409 -7.54979 -7.06902 -6.72899 -4.65691 0.78199 1.43735 2.47394 2.78875 2.79014 3.01390 3.05764 3.11570 3.15172 3.38027 3.38589 3.78379 3.80770 3.86612 4.56649 4.65279 4.68891 4.85452 4.87816 5.15663 5.19597 5.23571 5.30189 5.43787 5.62467 5.66803 5.92642 5.95706 6.13058 6.34720 6.53086 6.55986 6.59922 6.61961 6.75934 6.93088 7.06042 7.12461 7.25037 7.32936 7.43653 7.72323 7.85509 7.93331 8.16179 8.29701 8.39252 8.66306 8.74925 8.79405 9.62838 10.13225 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019931 B = 0.002241 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.510208 B =12492.172121 C =13734.737819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.457 4.457 8 H 0.081 0.919 9 C 0.140 3.860 10 C -0.275 4.275 11 C 0.115 3.885 12 N -0.549 5.549 13 C 0.332 3.668 14 N -0.654 5.654 15 C 0.490 3.510 16 O -0.467 6.467 17 C 0.093 3.907 18 N -0.707 5.707 19 C 0.284 3.716 20 C -0.215 4.215 21 C -0.039 4.039 22 C -0.200 4.200 23 C -0.033 4.033 24 C -0.236 4.236 25 C 0.568 3.432 26 N -0.853 5.853 27 O -0.537 6.537 28 C -0.230 4.230 29 H 0.280 0.720 30 H 0.104 0.896 31 H 0.125 0.875 32 H 0.410 0.590 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.432 0.568 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.399 0.601 41 H 0.404 0.596 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.168 -9.689 6.643 21.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.132 3.868 10 C -0.298 4.298 11 C -0.040 4.040 12 N -0.267 5.267 13 C 0.107 3.893 14 N -0.300 5.300 15 C 0.273 3.727 16 O -0.336 6.336 17 C -0.036 4.036 18 N -0.347 5.347 19 C 0.171 3.829 20 C -0.238 4.238 21 C -0.058 4.058 22 C -0.221 4.221 23 C -0.053 4.053 24 C -0.244 4.244 25 C 0.357 3.643 26 N -0.417 5.417 27 O -0.415 6.415 28 C -0.255 4.255 29 H 0.091 0.909 30 H 0.122 0.878 31 H 0.142 0.858 32 H 0.245 0.755 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.285 0.715 36 H 0.147 0.853 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.228 0.772 41 H 0.234 0.766 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -17.629 -10.612 6.095 21.460 hybrid contribution 0.409 1.533 -0.073 1.588 sum -17.220 -9.079 6.022 20.377 Atomic orbital electron populations 1.69705 1.07446 1.29028 1.36923 1.25925 0.94966 1.01361 0.92105 0.86152 0.80228 0.80119 0.79256 1.19432 1.20162 1.18546 1.19540 0.94653 0.89587 1.45153 0.90108 1.17622 0.90733 0.92090 0.86355 1.22015 1.03115 0.95781 1.08935 1.21791 0.90160 0.96186 0.95843 1.67207 1.13800 1.29843 1.15879 1.18222 0.85528 0.91074 0.94508 1.43294 1.18844 1.16371 1.51537 1.20423 0.86840 0.83692 0.81718 1.90836 1.68377 1.35747 1.38595 1.21208 0.93902 0.86973 1.01470 1.45537 1.14963 1.14738 1.59420 1.17796 0.84727 0.91292 0.89068 1.20745 0.97122 1.01347 1.04595 1.21067 0.93706 0.95628 0.95386 1.20748 1.01265 0.95734 1.04309 1.20961 0.91916 0.98227 0.94154 1.19179 0.97781 0.97057 1.10412 1.18213 0.85823 0.81134 0.79147 1.43649 1.18372 1.24082 1.55584 1.90596 1.17826 1.74610 1.58482 1.21763 1.00022 0.95273 1.08446 0.90916 0.87803 0.85764 0.75531 0.89008 0.89156 0.71525 0.85302 0.85762 0.86012 0.86051 0.77174 0.76557 0.84629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.77 10.66 55.55 0.59 -19.17 16 2 C 0.07 1.77 5.41 -17.34 -0.09 1.67 16 3 Si 0.92 18.08 29.56 -169.99 -5.02 13.05 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.30 7.11 56.52 0.40 -4.89 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.46 -11.75 9.12 -37.65 -0.34 -12.09 16 8 H 0.08 1.99 7.85 -52.49 -0.41 1.58 16 9 C 0.14 3.70 5.58 -106.55 -0.59 3.10 16 10 C -0.27 -6.79 9.90 -38.70 -0.38 -7.17 16 11 C 0.11 2.80 11.15 -17.68 -0.20 2.60 16 12 N -0.55 -14.25 7.85 -12.52 -0.10 -14.35 16 13 C 0.33 8.05 7.41 -154.71 -1.15 6.91 16 14 N -0.65 -12.61 5.39 -11.49 -0.06 -12.67 16 15 C 0.49 9.37 7.86 -10.99 -0.09 9.28 16 16 O -0.47 -11.19 13.92 5.56 0.08 -11.11 16 17 C 0.09 1.28 5.44 -5.19 -0.03 1.25 16 18 N -0.71 -11.00 5.55 -59.62 -0.33 -11.33 16 19 C 0.28 3.71 6.65 -83.61 -0.56 3.16 16 20 C -0.22 -2.21 9.30 -39.42 -0.37 -2.58 16 21 C -0.04 -0.32 10.03 -39.55 -0.40 -0.72 16 22 C -0.20 -1.56 10.02 -39.62 -0.40 -1.95 16 23 C -0.03 -0.28 9.52 -39.20 -0.37 -0.65 16 24 C -0.24 -2.80 5.89 -104.81 -0.62 -3.42 16 25 C 0.57 7.42 8.02 -12.52 -0.10 7.32 16 26 N -0.85 -6.83 8.82 30.43 0.27 -6.57 16 27 O -0.54 -9.62 14.48 5.28 0.08 -9.54 16 28 C -0.23 -5.79 8.59 -38.48 -0.33 -6.12 16 29 H 0.28 6.26 8.29 -40.82 -0.34 5.92 16 30 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 31 H 0.12 2.67 8.06 -52.48 -0.42 2.25 16 32 H 0.41 6.21 8.70 -40.82 -0.36 5.86 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.09 0.97 7.70 -51.93 -0.40 0.57 16 35 H 0.43 8.15 3.95 -40.93 -0.16 7.98 16 36 H 0.13 1.11 6.72 -52.48 -0.35 0.76 16 37 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.12 0.60 6.45 -52.49 -0.34 0.26 16 40 H 0.40 1.83 6.89 -40.82 -0.28 1.55 16 41 H 0.40 2.85 8.93 -40.82 -0.36 2.49 16 42 H 0.14 3.38 6.20 -52.49 -0.33 3.05 16 LS Contribution 359.49 15.07 5.42 5.42 Total: -1.00 -35.49 359.49 -9.33 -44.83 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: -4.24 Total: 20.84 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -6.01 Total: 0.59 kcal Atomic # 7 Polarization: -64.45 SS G_CDS: 0.37 Total: -64.08 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: 0.15 Total: -20.65 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.02 Total: 13.05 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.49 -9.33 -44.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566530256.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.955 kcal (2) G-P(sol) polarization free energy of solvation -35.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds