Wall clock time and date at job start Tue Mar 31 2020 23:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86802 * 119.99950 * 2 1 4 4 H 1.48500 * 109.46976 * 270.00055 * 3 2 1 5 5 H 1.48494 * 109.47111 * 29.99921 * 3 2 1 6 6 H 1.48501 * 109.47177 * 150.00043 * 3 2 1 7 7 C 1.40037 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99459 * 179.90383 * 7 2 1 9 9 C 1.41538 * 120.00054 * 359.89364 * 7 2 1 10 10 C 1.41176 * 120.99366 * 147.90247 * 9 7 2 11 11 C 1.37589 * 119.01315 * 180.02562 * 10 9 7 12 12 N 1.32088 * 121.11124 * 359.72916 * 11 10 9 13 13 C 1.32465 * 122.22996 * 0.56644 * 12 11 10 14 14 N 1.39467 * 119.58219 * 179.70422 * 13 12 11 15 15 C 1.34774 * 119.99756 * 354.31515 * 14 13 12 16 16 O 1.21274 * 120.00414 * 4.69369 * 15 14 13 17 17 C 1.50697 * 120.00049 * 184.70074 * 15 14 13 18 18 N 1.46506 * 109.47395 * 179.97438 * 17 15 14 19 19 C 1.38871 * 120.00075 * 179.97438 * 18 17 15 20 20 C 1.38959 * 120.17801 * 353.67720 * 19 18 17 21 21 C 1.37948 * 120.06654 * 179.97438 * 20 19 18 22 22 C 1.38612 * 120.42333 * 359.97438 * 21 20 19 23 23 C 1.37753 * 120.34961 * 359.97438 * 22 21 20 24 24 C 1.39730 * 119.92699 * 0.02562 * 23 22 21 25 25 C 1.47430 * 120.20678 * 179.97438 * 24 23 22 26 26 N 1.34780 * 120.00198 * 5.61502 * 25 24 23 27 27 O 1.21598 * 120.00219 * 185.61219 * 25 24 23 28 28 C 1.38599 * 120.83903 * 359.43446 * 13 12 11 29 29 H 0.96996 * 120.00206 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.49657 * 0.02562 * 10 9 7 31 31 H 1.08006 * 119.44320 * 180.02562 * 11 10 9 32 32 H 0.96996 * 120.00213 * 174.31276 * 14 13 12 33 33 H 1.08997 * 109.47407 * 59.99445 * 17 15 14 34 34 H 1.09001 * 109.47021 * 299.99734 * 17 15 14 35 35 H 0.96998 * 119.99677 * 0.02562 * 18 17 15 36 36 H 1.08003 * 119.96633 * 359.97438 * 20 19 18 37 37 H 1.07999 * 119.79019 * 179.97438 * 21 20 19 38 38 H 1.07997 * 119.82857 * 180.02562 * 22 21 20 39 39 H 1.07998 * 120.03273 * 179.72837 * 23 22 21 40 40 H 0.97001 * 119.99544 * 0.02562 * 26 25 24 41 41 H 0.96996 * 120.00380 * 179.97438 * 26 25 24 42 42 H 1.08000 * 120.60204 * 180.29511 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4388 2.6526 0.7000 6 1 3.5390 1.4402 0.7000 7 6 2.0076 -1.2128 -0.0005 8 1 3.0876 -1.2127 -0.0021 9 6 1.2999 -2.4385 0.0012 10 6 1.8233 -3.5810 -0.6422 11 6 1.1006 -4.7516 -0.6156 12 7 -0.0641 -4.8207 0.0035 13 6 -0.6012 -3.7767 0.6169 14 7 -1.8376 -3.9102 1.2483 15 6 -2.5312 -5.0602 1.1354 16 8 -2.0438 -6.0081 0.5569 17 6 -3.9126 -5.1682 1.7278 18 7 -4.4505 -6.5067 1.4720 19 6 -5.7184 -6.8442 1.9270 20 6 -6.4273 -5.9646 2.7361 21 6 -7.6868 -6.3019 3.1863 22 6 -8.2552 -7.5168 2.8366 23 6 -7.5683 -8.4014 2.0345 24 6 -6.2915 -8.0746 1.5703 25 6 -5.5507 -9.0169 0.7120 26 7 -6.1464 -10.1460 0.2798 27 8 -4.4021 -8.7755 0.3939 28 6 0.0525 -2.5549 0.6440 29 1 -0.4850 0.8400 -0.0004 30 1 2.7766 -3.5369 -1.1476 31 1 1.4947 -5.6299 -1.1052 32 1 -2.1982 -3.1754 1.7688 33 1 -4.5632 -4.4223 1.2712 34 1 -3.8614 -4.9961 2.8029 35 1 -3.9206 -7.1575 0.9856 36 1 -5.9916 -5.0158 3.0128 37 1 -8.2336 -5.6151 3.8153 38 1 -9.2421 -7.7709 3.1941 39 1 -8.0142 -9.3484 1.7688 40 1 -7.0627 -10.3384 0.5332 41 1 -5.6591 -10.7658 -0.2852 42 1 -0.3867 -1.7074 1.1494 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566530256.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:14 Heat of formation + Delta-G solvation = -23.506842 kcal Electronic energy + Delta-G solvation = -27727.041836 eV Core-core repulsion = 23670.995725 eV Total energy + Delta-G solvation = -4056.046110 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.58796 -41.11546 -39.72767 -39.09324 -36.59680 -36.05665 -35.54094 -34.68654 -32.49502 -31.91358 -31.31149 -30.22400 -27.96030 -27.57954 -24.95695 -23.92936 -23.65392 -22.38344 -21.93916 -21.19500 -19.53916 -19.23346 -18.67333 -17.85481 -17.82884 -17.17989 -16.98262 -16.82934 -16.46341 -16.07683 -16.02928 -15.88344 -15.74083 -15.15780 -14.99719 -14.91921 -14.61776 -14.34470 -14.25377 -14.09694 -14.04376 -13.31358 -13.15104 -12.86117 -12.85479 -12.71365 -12.18881 -12.07459 -11.87727 -11.55267 -11.22491 -11.18197 -11.14282 -10.93034 -10.75325 -9.88834 -9.88352 -9.68198 -8.91791 -8.56476 -8.42305 -6.60811 0.03623 0.66367 0.71881 0.97644 1.41633 1.51392 1.54977 1.74513 1.85408 1.92694 2.21444 2.59532 2.64940 2.82541 3.03877 3.47734 3.67722 3.92095 3.97870 4.14743 4.19340 4.25972 4.30011 4.53120 4.59808 4.67100 4.72293 4.80315 4.87701 5.03575 5.06301 5.22952 5.24817 5.42977 5.49222 5.58278 5.68616 5.84970 5.89495 5.94827 6.10476 6.27325 6.43101 6.50277 6.53625 6.76336 6.78431 6.83931 7.18365 7.38733 7.77110 8.32474 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019931 B = 0.002241 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.510208 B =12492.172121 C =13734.737819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.034 3.966 3 Si 0.993 3.007 4 H -0.266 1.266 5 H -0.264 1.264 6 H -0.258 1.258 7 C -0.485 4.485 8 H 0.083 0.917 9 C 0.110 3.890 10 C -0.287 4.287 11 C 0.106 3.894 12 N -0.577 5.577 13 C 0.328 3.672 14 N -0.644 5.644 15 C 0.487 3.513 16 O -0.520 6.520 17 C 0.108 3.892 18 N -0.734 5.734 19 C 0.252 3.748 20 C -0.224 4.224 21 C -0.036 4.036 22 C -0.193 4.193 23 C -0.030 4.030 24 C -0.257 4.257 25 C 0.557 3.443 26 N -0.830 5.830 27 O -0.596 6.596 28 C -0.244 4.244 29 H 0.290 0.710 30 H 0.118 0.882 31 H 0.147 0.853 32 H 0.428 0.572 33 H 0.118 0.882 34 H 0.124 0.876 35 H 0.415 0.585 36 H 0.142 0.858 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.156 0.844 40 H 0.417 0.583 41 H 0.409 0.591 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.033 -8.726 8.093 24.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.181 4.181 3 Si 0.813 3.187 4 H -0.191 1.191 5 H -0.188 1.188 6 H -0.182 1.182 7 C -0.517 4.517 8 H 0.101 0.899 9 C 0.102 3.898 10 C -0.311 4.311 11 C -0.047 4.047 12 N -0.297 5.297 13 C 0.102 3.898 14 N -0.292 5.292 15 C 0.273 3.727 16 O -0.392 6.392 17 C -0.019 4.019 18 N -0.373 5.373 19 C 0.142 3.858 20 C -0.246 4.246 21 C -0.054 4.054 22 C -0.213 4.213 23 C -0.049 4.049 24 C -0.266 4.266 25 C 0.347 3.653 26 N -0.393 5.393 27 O -0.479 6.479 28 C -0.270 4.270 29 H 0.101 0.899 30 H 0.136 0.864 31 H 0.165 0.835 32 H 0.267 0.733 33 H 0.136 0.864 34 H 0.142 0.858 35 H 0.264 0.736 36 H 0.160 0.840 37 H 0.173 0.827 38 H 0.173 0.827 39 H 0.173 0.827 40 H 0.250 0.750 41 H 0.240 0.760 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -20.615 -9.671 7.589 24.002 hybrid contribution 1.123 1.145 -0.497 1.679 sum -19.492 -8.526 7.091 22.426 Atomic orbital electron populations 1.69746 1.08734 1.30619 1.36068 1.26814 0.95840 1.04449 0.91009 0.85032 0.78884 0.75427 0.79316 1.19128 1.18792 1.18223 1.19819 0.94993 0.90399 1.46462 0.89912 1.18071 0.91676 0.93054 0.86995 1.22190 1.03862 0.95642 1.09376 1.22209 0.89944 0.97024 0.95560 1.67333 1.14617 1.30744 1.16997 1.18487 0.86878 0.90485 0.93950 1.43287 1.17369 1.17469 1.51101 1.21413 0.88421 0.82394 0.80491 1.90809 1.69992 1.37483 1.40922 1.21237 0.90216 0.87482 1.02991 1.45591 1.16175 1.14711 1.60870 1.18217 0.84292 0.92727 0.90565 1.20999 0.97886 1.01505 1.04224 1.21508 0.92886 0.96333 0.94713 1.21228 1.02282 0.95009 1.02769 1.21348 0.90379 0.99790 0.93390 1.19380 0.99204 0.96832 1.11151 1.18636 0.85295 0.82218 0.79163 1.43456 1.19086 1.22533 1.54261 1.90576 1.20426 1.76050 1.60856 1.21755 1.00345 0.95597 1.09274 0.89888 0.86356 0.83547 0.73341 0.86405 0.85830 0.73578 0.83983 0.82692 0.82726 0.82675 0.74966 0.75957 0.84730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -40.49 10.66 21.84 0.23 -40.26 16 2 C 0.03 1.63 5.41 85.29 0.46 2.09 16 3 Si 0.99 36.35 29.56 68.60 2.03 38.37 16 4 H -0.27 -9.60 7.11 99.48 0.71 -8.89 16 5 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 6 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 7 C -0.49 -25.32 9.12 23.52 0.21 -25.11 16 8 H 0.08 4.13 7.85 -2.91 -0.02 4.11 16 9 C 0.11 5.98 5.58 -21.11 -0.12 5.86 16 10 C -0.29 -14.62 9.90 22.84 0.23 -14.39 16 11 C 0.11 5.38 11.15 84.50 0.94 6.32 16 12 N -0.58 -31.15 7.85 -193.53 -1.52 -32.67 16 13 C 0.33 16.47 7.41 132.76 0.98 17.45 16 14 N -0.64 -25.32 5.39 -308.67 -1.66 -26.99 16 15 C 0.49 19.14 7.86 87.66 0.69 19.83 16 16 O -0.52 -26.26 13.92 -3.01 -0.04 -26.30 16 17 C 0.11 2.94 5.44 85.63 0.47 3.40 16 18 N -0.73 -23.48 5.55 -342.53 -1.90 -25.38 16 19 C 0.25 6.48 6.65 38.71 0.26 6.74 16 20 C -0.22 -4.10 9.30 22.37 0.21 -3.89 16 21 C -0.04 -0.45 10.03 22.29 0.22 -0.23 16 22 C -0.19 -2.18 10.02 22.24 0.22 -1.96 16 23 C -0.03 -0.42 9.52 22.52 0.21 -0.20 16 24 C -0.26 -5.94 5.89 -19.98 -0.12 -6.06 16 25 C 0.56 14.91 8.02 86.66 0.70 15.61 16 26 N -0.83 -12.70 8.82 -175.88 -1.55 -14.25 16 27 O -0.60 -22.88 14.48 -4.03 -0.06 -22.94 16 28 C -0.24 -12.70 8.59 22.99 0.20 -12.50 16 29 H 0.29 12.75 8.29 -92.71 -0.77 11.98 16 30 H 0.12 5.48 8.06 -2.91 -0.02 5.45 16 31 H 0.15 6.48 8.06 -2.91 -0.02 6.46 16 32 H 0.43 12.95 8.70 -92.71 -0.81 12.14 16 33 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.12 2.46 7.70 -2.39 -0.02 2.44 16 35 H 0.42 16.70 3.95 -94.51 -0.37 16.33 16 36 H 0.14 2.08 6.72 -2.91 -0.02 2.06 16 37 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 38 H 0.16 0.77 8.06 -2.91 -0.02 0.75 16 39 H 0.16 0.92 6.45 -2.91 -0.02 0.90 16 40 H 0.42 2.93 6.89 -92.71 -0.64 2.29 16 41 H 0.41 5.66 8.93 -92.71 -0.83 4.84 16 42 H 0.14 6.87 6.20 -2.91 -0.02 6.86 16 Total: -1.00 -82.95 359.49 -0.22 -83.16 By element: Atomic # 1 Polarization: 55.81 SS G_CDS: -1.51 Total: 54.31 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 5.77 Total: 12.95 kcal Atomic # 7 Polarization: -133.15 SS G_CDS: -6.41 Total: -139.55 kcal Atomic # 8 Polarization: -49.14 SS G_CDS: -0.10 Total: -49.24 kcal Atomic # 14 Polarization: 36.35 SS G_CDS: 2.03 Total: 38.37 kcal Total: -82.95 -0.22 -83.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566530256.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.657 kcal (2) G-P(sol) polarization free energy of solvation -82.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds