Wall clock time and date at job start Tue Mar 31 2020 23:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00592 * 2 1 4 4 H 1.48501 * 109.47439 * 270.00136 * 3 2 1 5 5 H 1.48503 * 109.46829 * 30.00023 * 3 2 1 6 6 H 1.48492 * 109.47286 * 150.00064 * 3 2 1 7 7 C 1.37887 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99755 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00043 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.46987 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47230 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47230 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46987 * 180.02562 * 12 11 10 14 14 O 1.21281 * 120.00122 * 0.02562 * 13 12 11 15 15 N 1.34783 * 119.99763 * 180.02562 * 13 12 11 16 16 C 1.39925 * 119.99512 * 184.62501 * 15 13 12 17 17 C 1.38870 * 120.06695 * 144.91470 * 16 15 13 18 18 C 1.38117 * 119.92504 * 180.29460 * 17 16 15 19 19 C 1.38279 * 120.06853 * 359.41825 * 18 17 16 20 20 C 1.50706 * 119.92667 * 180.32129 * 19 18 17 21 21 S 1.81394 * 109.47170 * 270.27674 * 20 19 18 22 22 N 1.65597 * 104.45052 * 179.97438 * 21 20 19 23 23 O 1.42100 * 110.54764 * 291.62352 * 21 20 19 24 24 O 1.42098 * 110.54277 * 68.37750 * 21 20 19 25 25 C 1.38279 * 120.14393 * 0.60397 * 19 18 17 26 26 C 1.38110 * 120.06800 * 359.67094 * 25 19 18 27 27 H 0.97006 * 119.99493 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47392 * 59.99645 * 9 7 2 29 29 H 1.09000 * 109.46822 * 299.99366 * 9 7 2 30 30 H 1.09006 * 109.47069 * 60.00026 * 10 9 7 31 31 H 1.08998 * 109.47439 * 300.00077 * 10 9 7 32 32 H 1.09006 * 109.46735 * 60.00236 * 11 10 9 33 33 H 1.08992 * 109.47144 * 300.00148 * 11 10 9 34 34 H 1.08998 * 109.47179 * 60.00131 * 12 11 10 35 35 H 1.09006 * 109.47248 * 300.00246 * 12 11 10 36 36 H 0.97003 * 120.00217 * 4.61241 * 15 13 12 37 37 H 1.08001 * 120.03955 * 0.02562 * 17 16 15 38 38 H 1.08001 * 119.96129 * 179.69790 * 18 17 16 39 39 H 1.08997 * 109.47245 * 30.28116 * 20 19 18 40 40 H 1.09007 * 109.46869 * 150.27730 * 20 19 18 41 41 H 0.97005 * 120.00348 * 0.02562 * 22 21 20 42 42 H 0.97003 * 120.00863 * 179.97438 * 22 21 20 43 43 H 1.07995 * 119.96737 * 179.70232 * 25 19 18 44 44 H 1.08001 * 120.03456 * 180.02562 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5514 -2.6369 -0.0001 12 6 6.0613 -4.0794 -0.0009 13 6 7.5683 -4.0794 -0.0003 14 8 8.1748 -3.0292 0.0011 15 7 8.2421 -5.2468 -0.0014 16 6 9.6379 -5.2488 0.0969 17 6 10.2848 -6.2611 0.7935 18 6 11.6623 -6.2570 0.8938 19 6 12.3979 -5.2529 0.2913 20 6 13.9012 -5.2555 0.3967 21 16 14.4054 -4.3324 1.8746 22 7 16.0593 -4.4142 1.8686 23 8 14.1219 -2.9487 1.7192 24 8 14.0248 -5.0304 3.0524 25 6 11.7566 -4.2433 -0.4027 26 6 10.3791 -4.2386 -0.5018 27 1 -0.4850 0.8401 0.0004 28 1 3.8745 -0.6810 0.8905 29 1 3.8751 -0.6799 -0.8895 30 1 3.6583 -3.1504 -0.8904 31 1 3.6577 -3.1508 0.8896 32 1 5.9148 -2.1231 0.8900 33 1 5.9147 -2.1230 -0.8900 34 1 5.6979 -4.5927 -0.8911 35 1 5.6979 -4.5937 0.8888 36 1 7.7594 -6.0854 -0.0700 37 1 9.7112 -7.0483 1.2600 38 1 12.1658 -7.0413 1.4396 39 1 14.2585 -6.2826 0.4703 40 1 14.3283 -4.7849 -0.4889 41 1 16.5189 -4.8900 1.1591 42 1 16.5688 -3.9858 2.5742 43 1 12.3336 -3.4579 -0.8680 44 1 9.8789 -3.4500 -1.0444 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588149502.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:39 Heat of formation + Delta-G solvation = -101.330763 kcal Electronic energy + Delta-G solvation = -25761.553824 eV Core-core repulsion = 21805.284216 eV Total energy + Delta-G solvation = -3956.269608 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.84972 -39.08291 -37.39524 -36.30155 -35.62846 -34.99641 -33.70166 -32.75916 -32.25151 -31.36985 -30.20861 -27.54514 -25.75309 -23.49486 -22.76886 -21.59303 -20.37014 -20.05988 -19.92373 -18.24735 -18.03463 -17.87215 -17.16702 -16.58529 -16.38039 -16.14323 -15.91147 -15.73335 -15.24557 -14.71000 -14.26408 -14.18166 -13.94473 -13.84298 -13.34407 -13.22988 -12.67546 -12.55229 -12.50263 -12.49441 -12.46118 -12.33558 -12.15185 -11.78868 -11.73550 -11.52462 -11.14688 -10.95164 -10.77722 -10.57921 -10.48645 -10.04867 -9.84741 -9.66350 -9.48530 -9.31619 -9.12988 -8.49602 -8.44864 -6.00868 -3.98455 -0.36318 0.84317 1.01376 2.39204 2.41989 2.77276 3.16433 3.35510 3.39101 3.42782 3.48824 3.70423 3.84744 4.36989 4.50054 4.52587 4.59104 4.67359 4.76208 4.97609 5.08209 5.17578 5.20806 5.23449 5.34028 5.44285 5.60670 5.69417 5.78434 5.95762 5.97766 6.04391 6.09296 6.12962 6.36387 6.49048 6.62950 6.64051 6.78066 6.96465 7.10049 7.36622 7.49506 7.84132 7.93140 8.57611 9.03935 9.62497 11.12559 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020900 B = 0.001727 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.376956 B =16209.945916 C =17080.248535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.103 4.103 11 C -0.108 4.108 12 C -0.137 4.137 13 C 0.512 3.488 14 O -0.512 6.512 15 N -0.682 5.682 16 C 0.165 3.835 17 C -0.146 4.146 18 C -0.082 4.082 19 C -0.123 4.123 20 C -0.566 4.566 21 S 2.605 3.395 22 N -1.255 6.255 23 O -0.954 6.954 24 O -0.957 6.957 25 C -0.081 4.081 26 C -0.121 4.121 27 H 0.262 0.738 28 H 0.016 0.984 29 H 0.011 0.989 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.413 0.587 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.143 0.857 40 H 0.144 0.856 41 H 0.411 0.589 42 H 0.420 0.580 43 H 0.134 0.866 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.572 -18.745 -0.937 39.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.146 4.146 12 C -0.177 4.177 13 C 0.301 3.699 14 O -0.386 6.386 15 N -0.327 5.327 16 C 0.070 3.930 17 C -0.167 4.167 18 C -0.102 4.102 19 C -0.126 4.126 20 C -0.694 4.694 21 S 2.698 3.302 22 N -0.928 5.928 23 O -0.943 6.943 24 O -0.946 6.946 25 C -0.101 4.101 26 C -0.141 4.141 27 H 0.072 0.928 28 H 0.034 0.966 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.249 0.751 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.161 0.839 40 H 0.162 0.838 41 H 0.237 0.763 42 H 0.250 0.750 43 H 0.152 0.848 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 34.040 -17.354 -0.238 38.209 hybrid contribution 0.750 -0.028 -0.640 0.986 sum 34.790 -17.382 -0.877 38.900 Atomic orbital electron populations 1.69921 1.06313 1.26837 1.51387 1.25043 0.94737 0.99238 0.94580 0.86773 0.80450 0.83532 0.78534 1.20317 1.21439 1.18891 1.21179 0.89650 0.94388 1.50636 0.91109 1.19576 0.96938 0.92426 0.96360 1.21478 0.91485 1.00046 1.01012 1.21517 0.97439 0.92517 1.03107 1.21812 0.88927 1.02260 1.04677 1.21391 0.91306 0.82725 0.74453 1.90718 1.70184 1.31152 1.46529 1.43787 1.04657 1.10570 1.73715 1.17949 0.83223 0.96225 0.95627 1.20926 0.94651 1.00427 1.00690 1.20894 0.93546 0.97702 0.98062 1.18760 0.90814 0.98531 1.04496 1.29287 1.02321 1.16043 1.21753 1.05199 0.73048 0.75615 0.76380 1.53228 1.27779 1.72338 1.39416 1.93635 1.83171 1.31253 1.86257 1.93614 1.81613 1.75449 1.43955 1.21070 0.94525 0.97158 0.97349 1.21385 0.93268 0.99562 0.99886 0.92809 0.96584 0.97034 0.92799 0.92750 0.91597 0.91643 0.88493 0.88456 0.75056 0.84865 0.84810 0.83874 0.83823 0.76320 0.75034 0.84814 0.83443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.35 13.96 55.43 0.77 -27.58 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.40 27.47 -169.99 -4.67 17.74 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.26 -6.55 6.54 56.52 0.37 -6.18 16 7 C -0.52 -15.10 9.66 -34.44 -0.33 -15.43 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 10 C -0.10 -1.97 5.15 -26.73 -0.14 -2.11 16 11 C -0.11 -1.73 4.50 -26.73 -0.12 -1.85 16 12 C -0.14 -1.57 5.70 -27.88 -0.16 -1.73 16 13 C 0.51 6.37 7.67 -10.98 -0.08 6.28 16 14 O -0.51 -8.40 13.42 5.56 0.07 -8.32 16 15 N -0.68 -6.29 5.34 -9.86 -0.05 -6.34 16 16 C 0.17 1.70 6.30 -83.70 -0.53 1.18 16 17 C -0.15 -1.21 9.97 -39.39 -0.39 -1.61 16 18 C -0.08 -0.65 9.69 -39.61 -0.38 -1.03 16 19 C -0.12 -0.99 5.14 -104.59 -0.54 -1.53 16 20 C -0.57 -2.33 6.21 36.01 0.22 -2.11 16 21 S 2.61 18.50 5.95 -107.50 -0.64 17.86 16 22 N -1.25 -3.76 9.43 60.35 0.57 -3.19 16 23 O -0.95 -11.12 18.10 -57.54 -1.04 -12.16 16 24 O -0.96 -10.45 18.10 -57.54 -1.04 -11.49 16 25 C -0.08 -0.78 9.69 -39.61 -0.38 -1.17 16 26 C -0.12 -1.38 8.70 -39.39 -0.34 -1.73 16 27 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 28 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 29 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 33 H 0.06 1.10 8.10 -51.93 -0.42 0.68 16 34 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.41 2.29 8.82 -40.82 -0.36 1.93 16 37 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 38 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.14 0.14 8.09 -51.93 -0.42 -0.28 16 40 H 0.14 0.21 8.08 -51.92 -0.42 -0.21 16 41 H 0.41 -0.21 8.83 -34.47 -0.30 -0.52 16 42 H 0.42 1.08 8.96 -34.48 -0.31 0.77 16 43 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 44 H 0.15 1.90 6.23 -52.49 -0.33 1.57 16 LS Contribution 383.45 15.07 5.78 5.78 Total: -1.00 -41.69 383.45 -9.93 -51.62 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -6.29 Total: -2.42 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -3.39 Total: -21.49 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 1.29 Total: -37.11 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -2.01 Total: -31.97 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.67 Total: 17.74 kcal Atomic # 16 Polarization: 18.50 SS G_CDS: -0.64 Total: 17.86 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -41.69 -9.93 -51.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588149502.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.711 kcal (2) G-P(sol) polarization free energy of solvation -41.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds