Wall clock time and date at job start Tue Mar 31 2020 23:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00592 * 2 1 4 4 H 1.48501 * 109.47439 * 270.00136 * 3 2 1 5 5 H 1.48503 * 109.46829 * 30.00023 * 3 2 1 6 6 H 1.48492 * 109.47286 * 150.00064 * 3 2 1 7 7 C 1.37887 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99755 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00043 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.46987 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47230 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47230 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46987 * 180.02562 * 12 11 10 14 14 O 1.21281 * 120.00122 * 0.02562 * 13 12 11 15 15 N 1.34783 * 119.99763 * 180.02562 * 13 12 11 16 16 C 1.39925 * 119.99512 * 184.62501 * 15 13 12 17 17 C 1.38870 * 120.06695 * 144.91470 * 16 15 13 18 18 C 1.38117 * 119.92504 * 180.29460 * 17 16 15 19 19 C 1.38279 * 120.06853 * 359.41825 * 18 17 16 20 20 C 1.50706 * 119.92667 * 180.32129 * 19 18 17 21 21 S 1.81394 * 109.47170 * 270.27674 * 20 19 18 22 22 N 1.65597 * 104.45052 * 179.97438 * 21 20 19 23 23 O 1.42100 * 110.54764 * 291.62352 * 21 20 19 24 24 O 1.42098 * 110.54277 * 68.37750 * 21 20 19 25 25 C 1.38279 * 120.14393 * 0.60397 * 19 18 17 26 26 C 1.38110 * 120.06800 * 359.67094 * 25 19 18 27 27 H 0.97006 * 119.99493 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47392 * 59.99645 * 9 7 2 29 29 H 1.09000 * 109.46822 * 299.99366 * 9 7 2 30 30 H 1.09006 * 109.47069 * 60.00026 * 10 9 7 31 31 H 1.08998 * 109.47439 * 300.00077 * 10 9 7 32 32 H 1.09006 * 109.46735 * 60.00236 * 11 10 9 33 33 H 1.08992 * 109.47144 * 300.00148 * 11 10 9 34 34 H 1.08998 * 109.47179 * 60.00131 * 12 11 10 35 35 H 1.09006 * 109.47248 * 300.00246 * 12 11 10 36 36 H 0.97003 * 120.00217 * 4.61241 * 15 13 12 37 37 H 1.08001 * 120.03955 * 0.02562 * 17 16 15 38 38 H 1.08001 * 119.96129 * 179.69790 * 18 17 16 39 39 H 1.08997 * 109.47245 * 30.28116 * 20 19 18 40 40 H 1.09007 * 109.46869 * 150.27730 * 20 19 18 41 41 H 0.97005 * 120.00348 * 0.02562 * 22 21 20 42 42 H 0.97003 * 120.00863 * 179.97438 * 22 21 20 43 43 H 1.07995 * 119.96737 * 179.70232 * 25 19 18 44 44 H 1.08001 * 120.03456 * 180.02562 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5514 -2.6369 -0.0001 12 6 6.0613 -4.0794 -0.0009 13 6 7.5683 -4.0794 -0.0003 14 8 8.1748 -3.0292 0.0011 15 7 8.2421 -5.2468 -0.0014 16 6 9.6379 -5.2488 0.0969 17 6 10.2848 -6.2611 0.7935 18 6 11.6623 -6.2570 0.8938 19 6 12.3979 -5.2529 0.2913 20 6 13.9012 -5.2555 0.3967 21 16 14.4054 -4.3324 1.8746 22 7 16.0593 -4.4142 1.8686 23 8 14.1219 -2.9487 1.7192 24 8 14.0248 -5.0304 3.0524 25 6 11.7566 -4.2433 -0.4027 26 6 10.3791 -4.2386 -0.5018 27 1 -0.4850 0.8401 0.0004 28 1 3.8745 -0.6810 0.8905 29 1 3.8751 -0.6799 -0.8895 30 1 3.6583 -3.1504 -0.8904 31 1 3.6577 -3.1508 0.8896 32 1 5.9148 -2.1231 0.8900 33 1 5.9147 -2.1230 -0.8900 34 1 5.6979 -4.5927 -0.8911 35 1 5.6979 -4.5937 0.8888 36 1 7.7594 -6.0854 -0.0700 37 1 9.7112 -7.0483 1.2600 38 1 12.1658 -7.0413 1.4396 39 1 14.2585 -6.2826 0.4703 40 1 14.3283 -4.7849 -0.4889 41 1 16.5189 -4.8900 1.1591 42 1 16.5688 -3.9858 2.5742 43 1 12.3336 -3.4579 -0.8680 44 1 9.8789 -3.4500 -1.0444 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588149502.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:38 Heat of formation + Delta-G solvation = -135.246373 kcal Electronic energy + Delta-G solvation = -25763.024516 eV Core-core repulsion = 21805.284216 eV Total energy + Delta-G solvation = -3957.740300 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.66932 -39.86121 -38.07037 -36.97621 -36.81256 -36.18564 -34.63819 -34.02781 -33.10904 -32.03833 -31.74470 -28.51496 -27.10138 -24.36453 -23.92251 -22.61592 -21.71422 -21.29376 -20.43506 -18.92261 -18.81148 -18.57647 -18.37623 -17.99955 -17.13351 -16.88895 -16.56634 -16.34839 -16.23944 -16.08667 -15.60263 -15.37406 -14.87739 -14.64279 -14.48365 -14.20132 -13.81483 -13.70369 -13.63663 -13.51418 -13.19008 -13.14267 -13.07320 -13.04325 -12.87606 -12.39410 -12.35801 -12.15244 -12.08537 -11.76669 -11.52705 -11.35194 -11.28118 -11.26638 -11.19660 -10.83032 -10.76598 -10.00028 -9.15627 -8.30452 -6.33271 -0.89530 0.18718 0.33990 1.33677 1.35587 1.48131 1.52093 1.95696 2.01019 2.34998 2.62300 2.77553 3.05074 3.35934 3.37854 3.65442 3.84139 3.95296 4.00786 4.13273 4.15494 4.32022 4.45540 4.52854 4.56167 4.63721 4.66446 4.75781 4.84254 4.99678 5.12864 5.14398 5.19007 5.27461 5.28562 5.28880 5.38533 5.43114 5.60156 5.65308 5.68261 5.93104 6.28808 6.37897 6.39226 6.74776 7.09544 7.31589 8.86019 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020900 B = 0.001727 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.376956 B =16209.945916 C =17080.248535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.005 3.995 3 Si 0.946 3.054 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.254 1.254 7 C -0.531 4.531 8 H 0.038 0.962 9 C -0.018 4.018 10 C -0.094 4.094 11 C -0.100 4.100 12 C -0.127 4.127 13 C 0.512 3.488 14 O -0.561 6.561 15 N -0.663 5.663 16 C 0.143 3.857 17 C -0.143 4.143 18 C -0.088 4.088 19 C -0.128 4.128 20 C -0.545 4.545 21 S 2.606 3.394 22 N -1.237 6.237 23 O -1.011 7.011 24 O -1.002 7.002 25 C -0.097 4.097 26 C -0.149 4.149 27 H 0.266 0.734 28 H 0.012 0.988 29 H 0.013 0.987 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.432 0.568 37 H 0.162 0.838 38 H 0.164 0.836 39 H 0.187 0.813 40 H 0.177 0.823 41 H 0.429 0.571 42 H 0.424 0.576 43 H 0.142 0.858 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.356 -20.914 -1.243 42.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.192 4.192 3 Si 0.770 3.230 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.178 1.178 7 C -0.569 4.569 8 H 0.057 0.943 9 C -0.056 4.056 10 C -0.131 4.131 11 C -0.138 4.138 12 C -0.167 4.167 13 C 0.302 3.698 14 O -0.438 6.438 15 N -0.310 5.310 16 C 0.048 3.952 17 C -0.163 4.163 18 C -0.107 4.107 19 C -0.131 4.131 20 C -0.676 4.676 21 S 2.703 3.297 22 N -0.916 5.916 23 O -1.000 7.000 24 O -0.991 6.991 25 C -0.117 4.117 26 C -0.169 4.169 27 H 0.075 0.925 28 H 0.030 0.970 29 H 0.031 0.969 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.272 0.728 37 H 0.179 0.821 38 H 0.182 0.818 39 H 0.205 0.795 40 H 0.194 0.806 41 H 0.259 0.741 42 H 0.254 0.746 43 H 0.160 0.840 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 36.860 -19.572 -0.529 41.737 hybrid contribution -0.095 0.520 -0.588 0.791 sum 36.765 -19.051 -1.117 41.423 Atomic orbital electron populations 1.70058 1.08074 1.28047 1.52854 1.25976 0.95606 1.03318 0.94317 0.85714 0.79353 0.78756 0.79183 1.19165 1.20747 1.17783 1.21556 0.92129 0.93239 1.49966 0.94338 1.19584 0.93902 0.96016 0.96049 1.21337 0.93599 0.96670 1.01534 1.21306 0.94944 0.95662 1.01878 1.21705 0.88289 0.99418 1.07255 1.21500 0.91629 0.82857 0.73862 1.90713 1.71051 1.33022 1.49062 1.43531 1.04541 1.10493 1.72446 1.18143 0.83447 0.96914 0.96725 1.21271 0.95276 1.00137 0.99656 1.21388 0.93619 0.98241 0.97499 1.19114 0.92938 0.97722 1.03321 1.29164 0.99876 1.18205 1.20353 1.04724 0.73685 0.74600 0.76717 1.52769 1.26223 1.72365 1.40205 1.93577 1.84365 1.34841 1.87217 1.93562 1.82736 1.75754 1.47096 1.21285 0.94090 0.98155 0.98128 1.21361 0.94427 0.99877 1.01229 0.92527 0.96962 0.96886 0.92150 0.92356 0.93143 0.92741 0.85706 0.85996 0.72837 0.82087 0.81841 0.79543 0.80559 0.74051 0.74569 0.84027 0.85984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.62 13.96 21.45 0.30 -60.32 16 2 C 0.00 0.28 5.47 84.66 0.46 0.74 16 3 Si 0.95 46.36 27.47 68.60 1.88 48.24 16 4 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.25 -11.91 6.54 99.48 0.65 -11.26 16 7 C -0.53 -31.34 9.66 25.60 0.25 -31.09 16 8 H 0.04 2.44 7.99 -2.91 -0.02 2.42 16 9 C -0.02 -0.88 4.04 29.85 0.12 -0.76 16 10 C -0.09 -3.53 5.15 30.59 0.16 -3.38 16 11 C -0.10 -3.14 4.50 30.59 0.14 -3.00 16 12 C -0.13 -2.68 5.70 29.85 0.17 -2.51 16 13 C 0.51 12.37 7.67 87.66 0.67 13.04 16 14 O -0.56 -18.95 13.42 -3.03 -0.04 -18.99 16 15 N -0.66 -11.30 5.34 -303.50 -1.62 -12.92 16 16 C 0.14 2.82 6.30 38.15 0.24 3.06 16 17 C -0.14 -2.02 9.97 22.39 0.22 -1.80 16 18 C -0.09 -1.11 9.69 22.25 0.22 -0.90 16 19 C -0.13 -1.76 5.14 -19.84 -0.10 -1.86 16 20 C -0.55 -2.55 6.21 71.24 0.44 -2.11 16 21 S 2.61 33.60 5.95 -56.49 -0.34 33.26 16 22 N -1.24 -4.83 9.43 37.02 0.35 -4.49 16 23 O -1.01 -23.87 18.10 -127.65 -2.31 -26.18 16 24 O -1.00 -21.06 18.10 -127.65 -2.31 -23.37 16 25 C -0.10 -1.82 9.69 22.25 0.22 -1.61 16 26 C -0.15 -3.49 8.70 22.39 0.19 -3.30 16 27 H 0.27 15.84 8.31 -92.70 -0.77 15.07 16 28 H 0.01 0.59 7.20 -2.39 -0.02 0.58 16 29 H 0.01 0.62 7.57 -2.39 -0.02 0.60 16 30 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 31 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.05 1.73 8.10 -2.38 -0.02 1.71 16 33 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16 34 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.12 2.01 8.14 -2.38 -0.02 1.99 16 36 H 0.43 3.68 8.82 -92.71 -0.82 2.86 16 37 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 38 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 39 H 0.19 -0.68 8.09 -2.39 -0.02 -0.70 16 40 H 0.18 -0.24 8.08 -2.39 -0.02 -0.26 16 41 H 0.43 -1.82 8.83 -96.74 -0.85 -2.67 16 42 H 0.42 1.56 8.96 -96.74 -0.87 0.69 16 43 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 44 H 0.12 3.42 6.23 -2.91 -0.02 3.41 16 Total: -1.00 -95.61 383.45 -2.23 -97.85 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -1.55 Total: 2.39 kcal Atomic # 6 Polarization: -38.87 SS G_CDS: 3.40 Total: -35.48 kcal Atomic # 7 Polarization: -76.75 SS G_CDS: -0.97 Total: -77.73 kcal Atomic # 8 Polarization: -63.88 SS G_CDS: -4.66 Total: -68.54 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.88 Total: 48.24 kcal Atomic # 16 Polarization: 33.60 SS G_CDS: -0.34 Total: 33.26 kcal Total: -95.61 -2.23 -97.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588149502.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.398 kcal (2) G-P(sol) polarization free energy of solvation -95.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds