Wall clock time and date at job start Tue Mar 31 2020 23:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00044 * 2 1 4 4 H 1.48506 * 109.46774 * 239.99894 * 3 2 1 5 5 H 1.48502 * 109.47011 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47024 * 119.99912 * 3 2 1 7 7 C 1.37878 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00361 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99550 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46661 * 180.02562 * 9 7 2 11 11 C 1.53009 * 109.47118 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47118 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47153 * 179.97438 * 12 11 10 14 14 O 1.21292 * 120.00025 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00119 * 179.97438 * 13 12 11 16 16 C 1.39931 * 119.99952 * 174.72930 * 15 13 12 17 17 C 1.38892 * 120.06700 * 326.55920 * 16 15 13 18 18 C 1.38093 * 119.92568 * 179.72430 * 17 16 15 19 19 C 1.38309 * 120.06762 * 0.56784 * 18 17 16 20 20 C 1.38256 * 120.14245 * 359.67966 * 19 18 17 21 21 C 1.50702 * 119.96375 * 180.02562 * 20 19 18 22 22 S 1.81396 * 109.47623 * 270.02424 * 21 20 19 23 23 N 1.65596 * 104.44959 * 180.02562 * 22 21 20 24 24 O 1.42096 * 110.54344 * 291.62736 * 22 21 20 25 25 O 1.42106 * 110.53882 * 68.37658 * 22 21 20 26 26 C 1.38131 * 120.07180 * 0.05083 * 20 19 18 27 27 H 0.97001 * 119.99848 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47582 * 60.00325 * 9 7 2 29 29 H 1.09003 * 109.47142 * 299.99733 * 9 7 2 30 30 H 1.09001 * 109.47455 * 60.00233 * 10 9 7 31 31 H 1.08994 * 109.47242 * 299.99703 * 10 9 7 32 32 H 1.09001 * 109.46716 * 59.99842 * 11 10 9 33 33 H 1.08994 * 109.46872 * 299.99992 * 11 10 9 34 34 H 1.09003 * 109.47006 * 299.99733 * 12 11 10 35 35 H 1.08996 * 109.47488 * 59.99832 * 12 11 10 36 36 H 0.96998 * 119.99918 * 354.72954 * 15 13 12 37 37 H 1.08001 * 120.04087 * 359.97145 * 17 16 15 38 38 H 1.08004 * 119.96795 * 180.24963 * 18 17 16 39 39 H 1.07999 * 119.92890 * 179.70040 * 19 18 17 40 40 H 1.09002 * 109.46895 * 30.03231 * 21 20 19 41 41 H 1.09000 * 109.46772 * 150.02456 * 21 20 19 42 42 H 0.97005 * 120.00163 * 0.02562 * 23 22 21 43 43 H 0.97005 * 119.99733 * 180.02562 * 23 22 21 44 44 H 1.08000 * 120.03632 * 180.02562 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0018 11 6 1.4801 -4.9871 0.0025 12 6 2.4744 -6.1500 0.0044 13 6 1.7209 -7.4551 0.0057 14 8 0.5080 -7.4551 0.0056 15 7 2.3947 -8.6223 0.0069 16 6 1.6995 -9.8315 0.1194 17 6 0.5396 -9.8990 0.8804 18 6 -0.1474 -11.0924 0.9848 19 6 0.3250 -12.2224 0.3421 20 6 1.4821 -12.1596 -0.4119 21 6 1.9928 -13.3931 -1.1109 22 16 3.1201 -14.2900 -0.0085 23 7 3.6014 -15.6058 -0.8913 24 8 4.3150 -13.5481 0.1937 25 8 2.4077 -14.8450 1.0887 26 6 2.1708 -10.9676 -0.5248 27 1 -0.4850 0.8401 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6240 -2.5566 0.8903 30 1 2.8712 -3.6040 0.8923 31 1 2.8725 -3.6047 -0.8877 32 1 0.8539 -5.0454 -0.8878 33 1 0.8531 -5.0442 0.8922 34 1 3.1017 -6.0932 -0.8852 35 1 3.1003 -6.0915 0.8948 36 1 3.3617 -8.6242 -0.0701 37 1 0.1730 -9.0183 1.3867 38 1 -1.0516 -11.1447 1.5731 39 1 -0.2114 -13.1557 0.4293 40 1 1.1527 -14.0362 -1.3731 41 1 2.5249 -13.1032 -2.0170 42 1 3.2665 -15.7341 -1.7926 43 1 4.2183 -16.2483 -0.5070 44 1 3.0744 -10.9191 -1.1144 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588154730.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:47 Heat of formation + Delta-G solvation = -105.414961 kcal Electronic energy + Delta-G solvation = -25704.586676 eV Core-core repulsion = 21748.139964 eV Total energy + Delta-G solvation = -3956.446712 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.79819 -39.02971 -37.45658 -36.36630 -35.41561 -34.84491 -33.74640 -33.20898 -32.63089 -30.63805 -29.38663 -27.86268 -25.77901 -23.31807 -22.85860 -21.74508 -20.30957 -20.02807 -19.87335 -18.33984 -18.01717 -17.58394 -16.88265 -16.59034 -16.39593 -16.14594 -15.94308 -15.82162 -15.23096 -14.68326 -14.43596 -14.16925 -13.89377 -13.73663 -13.30566 -13.19837 -12.65610 -12.61238 -12.53761 -12.40200 -12.30921 -12.23507 -11.87221 -11.73456 -11.62647 -11.44587 -10.99612 -10.98948 -10.61026 -10.55771 -10.55259 -10.44652 -9.96169 -9.63678 -9.26340 -9.18228 -9.01353 -8.42400 -8.31037 -5.95951 -3.98667 -0.40927 0.92420 0.97833 2.33730 2.49460 2.81782 3.10843 3.34951 3.39415 3.41594 3.43486 3.68585 3.79672 4.37873 4.47832 4.53641 4.67896 4.75400 4.81645 4.96386 5.12948 5.21995 5.27374 5.28712 5.39360 5.40455 5.53324 5.76253 5.90958 5.96592 6.07944 6.11632 6.19518 6.24091 6.45080 6.49131 6.66985 6.79297 6.96879 7.14458 7.19681 7.72464 7.88096 7.99381 8.05009 8.46626 9.08737 9.65028 11.15248 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.034217 B = 0.001549 C = 0.001505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.111190 B =18068.941528 C =18604.613292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.138 4.138 13 C 0.513 3.487 14 O -0.513 6.513 15 N -0.682 5.682 16 C 0.158 3.842 17 C -0.109 4.109 18 C -0.095 4.095 19 C -0.122 4.122 20 C -0.083 4.083 21 C -0.569 4.569 22 S 2.609 3.391 23 N -1.254 6.254 24 O -0.956 6.956 25 O -0.956 6.956 26 C -0.134 4.134 27 H 0.261 0.739 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.413 0.587 37 H 0.142 0.858 38 H 0.134 0.866 39 H 0.131 0.869 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.412 0.588 43 H 0.420 0.580 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.242 -35.256 -3.559 35.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.142 4.142 12 C -0.178 4.178 13 C 0.302 3.698 14 O -0.386 6.386 15 N -0.328 5.328 16 C 0.063 3.937 17 C -0.129 4.129 18 C -0.114 4.114 19 C -0.142 4.142 20 C -0.085 4.085 21 C -0.697 4.697 22 S 2.701 3.299 23 N -0.927 5.927 24 O -0.945 6.945 25 O -0.945 6.945 26 C -0.156 4.156 27 H 0.070 0.930 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.249 0.751 37 H 0.160 0.840 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.164 0.836 41 H 0.163 0.837 42 H 0.238 0.762 43 H 0.250 0.750 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.465 -34.686 -2.538 35.205 hybrid contribution 0.741 0.604 -1.069 1.434 sum 6.206 -34.081 -3.607 34.829 Atomic orbital electron populations 1.69965 1.06046 1.26635 1.50774 1.25039 0.94845 0.99228 0.95413 0.86664 0.79568 0.83227 0.78544 1.20302 1.21313 1.20280 1.21244 0.92959 0.91207 1.50638 0.92787 1.19092 0.94045 0.91252 0.97327 1.21654 0.99111 0.93879 1.00173 1.21480 0.96985 0.92661 1.03089 1.21838 1.00223 0.91180 1.04512 1.21389 0.88626 0.85359 0.74449 1.90728 1.14096 1.87291 1.46521 1.43803 1.10994 1.04222 1.73771 1.17712 0.94353 0.85689 0.95929 1.21390 0.94996 0.99093 0.97453 1.21089 0.99767 0.91737 0.98776 1.21103 0.95664 0.99416 0.98012 1.18488 0.97343 0.92247 1.00457 1.29334 1.16898 1.08423 1.15092 1.05067 0.75668 0.74277 0.74888 1.53204 1.64325 1.45211 1.30003 1.93619 1.44376 1.72442 1.84079 1.93621 1.74976 1.76384 1.49523 1.20822 1.01861 0.91805 1.01097 0.92985 0.96585 0.96573 0.93378 0.93401 0.91684 0.91666 0.88696 0.88533 0.75054 0.84023 0.84805 0.85086 0.83612 0.83727 0.76220 0.74997 0.84835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.38 13.29 55.43 0.74 -26.65 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.11 -2.22 5.15 -26.73 -0.14 -2.36 16 11 C -0.10 -1.78 4.50 -26.73 -0.12 -1.90 16 12 C -0.14 -1.69 5.70 -27.89 -0.16 -1.85 16 13 C 0.51 6.69 7.57 -10.99 -0.08 6.61 16 14 O -0.51 -8.64 13.68 5.55 0.08 -8.57 16 15 N -0.68 -6.90 5.34 -9.86 -0.05 -6.95 16 16 C 0.16 1.74 6.28 -83.69 -0.53 1.22 16 17 C -0.11 -1.27 8.65 -39.39 -0.34 -1.61 16 18 C -0.10 -0.92 10.04 -39.61 -0.40 -1.32 16 19 C -0.12 -1.04 9.70 -39.55 -0.38 -1.42 16 20 C -0.08 -0.67 5.14 -104.65 -0.54 -1.21 16 21 C -0.57 -2.26 6.22 36.01 0.22 -2.04 16 22 S 2.61 16.21 5.95 -107.50 -0.64 15.57 16 23 N -1.25 -3.00 9.43 60.35 0.57 -2.43 16 24 O -0.96 -9.66 18.10 -57.54 -1.04 -10.70 16 25 O -0.96 -9.63 18.10 -57.54 -1.04 -10.68 16 26 C -0.13 -1.22 9.62 -39.39 -0.38 -1.60 16 27 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 33 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.41 2.80 8.82 -40.82 -0.36 2.44 16 37 H 0.14 1.85 6.43 -52.49 -0.34 1.51 16 38 H 0.13 1.01 8.06 -52.48 -0.42 0.58 16 39 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 40 H 0.15 0.17 8.09 -51.92 -0.42 -0.25 16 41 H 0.14 0.20 8.08 -51.92 -0.42 -0.22 16 42 H 0.41 -0.36 8.83 -34.47 -0.30 -0.67 16 43 H 0.42 0.78 8.96 -34.47 -0.31 0.48 16 44 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 387.34 15.07 5.84 5.84 Total: -1.00 -40.62 387.34 -10.31 -50.93 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -6.34 Total: -2.33 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -3.39 Total: -20.85 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 1.25 Total: -36.02 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -2.01 Total: -29.94 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 16.21 SS G_CDS: -0.64 Total: 15.57 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -40.62 -10.31 -50.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588154730.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.487 kcal (2) G-P(sol) polarization free energy of solvation -40.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds