Wall clock time and date at job start Tue Mar 31 2020 23:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00093 * 2 1 4 4 H 1.48498 * 109.46925 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47196 * 299.99838 * 3 2 1 6 6 H 1.48501 * 109.46969 * 59.99729 * 3 2 1 7 7 C 1.37882 * 119.99580 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99318 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00439 * 0.02562 * 7 2 1 10 10 O 1.42904 * 110.87381 * 62.38697 * 9 7 2 11 11 C 1.55147 * 110.99147 * 298.54911 * 9 7 2 12 12 C 1.54314 * 103.01489 * 206.25282 * 11 9 7 13 13 N 1.47439 * 107.23886 * 22.28261 * 12 11 9 14 14 C 1.46901 * 111.00392 * 123.25418 * 13 12 11 15 15 C 1.53000 * 109.46769 * 69.87306 * 14 13 12 16 16 N 1.46499 * 109.46840 * 179.97438 * 15 14 13 17 17 S 1.65599 * 120.00012 * 165.00017 * 16 15 14 18 18 O 1.42097 * 106.40866 * 178.54114 * 17 16 15 19 19 O 1.42102 * 106.40573 * 311.46330 * 17 16 15 20 20 C 1.76207 * 107.21714 * 65.00092 * 17 16 15 21 21 C 1.38236 * 120.00100 * 269.72665 * 20 17 16 22 22 C 1.38231 * 119.99933 * 179.80819 * 21 20 17 23 23 C 1.38238 * 119.99989 * 0.39757 * 22 21 20 24 24 C 1.38231 * 119.99923 * 359.85841 * 23 22 21 25 25 C 1.38235 * 119.99554 * 89.99944 * 20 17 16 26 26 C 1.47849 * 108.56318 * 0.98524 * 13 12 11 27 27 H 0.97008 * 120.00270 * 0.02562 * 1 2 3 28 28 H 0.96697 * 114.00641 * 297.61441 * 10 9 7 29 29 H 1.08996 * 110.70426 * 87.86627 * 11 9 7 30 30 H 1.08999 * 110.85090 * 324.70833 * 11 9 7 31 31 H 1.09001 * 109.89065 * 262.87244 * 12 11 9 32 32 H 1.09005 * 110.01772 * 141.76563 * 12 11 9 33 33 H 1.09001 * 109.46874 * 309.87586 * 14 13 12 34 34 H 1.08992 * 109.47407 * 189.87604 * 14 13 12 35 35 H 1.09002 * 109.47398 * 300.00295 * 15 14 13 36 36 H 1.09001 * 109.47194 * 60.00475 * 15 14 13 37 37 H 0.97001 * 120.00191 * 345.00817 * 16 15 14 38 38 H 1.08003 * 119.99947 * 0.02562 * 21 20 17 39 39 H 1.07995 * 120.00116 * 180.23558 * 22 21 20 40 40 H 1.07996 * 119.99863 * 179.83228 * 23 22 21 41 41 H 1.08001 * 120.00368 * 179.97438 * 24 23 22 42 42 H 1.07991 * 120.00245 * 359.97438 * 25 20 17 43 43 H 1.08999 * 110.36998 * 94.73710 * 26 13 12 44 44 H 1.08999 * 110.37150 * 217.06985 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4609 -2.6310 -1.1829 11 6 0.3731 -2.6341 1.2726 12 6 0.2529 -4.1621 1.4514 13 7 1.3915 -4.7758 0.7438 14 6 2.1852 -5.6150 1.6515 15 6 1.3821 -6.8623 2.0258 16 7 2.1738 -7.6995 2.9305 17 16 1.4423 -8.9110 3.7904 18 8 2.4690 -9.5504 4.5360 19 8 0.2886 -8.3375 4.3898 20 6 0.8598 -10.0985 2.6261 21 6 -0.4151 -9.9866 2.1037 22 6 -0.8706 -10.9159 1.1874 23 6 -0.0542 -11.9619 0.7996 24 6 1.2188 -12.0768 1.3261 25 6 1.6758 -11.1452 2.2395 26 6 2.2183 -3.6985 0.1593 27 1 -0.4851 0.8401 -0.0004 28 1 -0.2246 -1.9553 -1.2755 29 1 -0.6078 -2.1863 1.1132 30 1 0.8659 -2.1828 2.1337 31 1 -0.6846 -4.5134 1.0202 32 1 0.2927 -4.4182 2.5102 33 1 2.4219 -5.0510 2.5537 34 1 3.1092 -5.9128 1.1562 35 1 0.4579 -6.5645 2.5211 36 1 1.1453 -7.4263 1.1235 37 1 3.1265 -7.5441 3.0260 38 1 -1.0541 -9.1710 2.4088 39 1 -1.8653 -10.8263 0.7763 40 1 -0.4110 -12.6894 0.0858 41 1 1.8566 -12.8941 1.0235 42 1 2.6703 -11.2349 2.6507 43 1 3.0358 -3.4401 0.8323 44 1 2.6074 -4.0035 -0.8121 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592149979.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:23 Heat of formation + Delta-G solvation = -88.728786 kcal Electronic energy + Delta-G solvation = -27357.259510 eV Core-core repulsion = 23401.536365 eV Total energy + Delta-G solvation = -3955.723146 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.40496 -38.60559 -37.41461 -36.04383 -35.97602 -34.19788 -32.15160 -31.63602 -31.37570 -30.25513 -28.24114 -27.00538 -24.34779 -23.55801 -23.11454 -22.54939 -20.04779 -19.65252 -19.54971 -18.41411 -17.60673 -16.97890 -16.47196 -16.34956 -15.62296 -15.33599 -14.94037 -14.90835 -14.81063 -14.54616 -14.08480 -13.88376 -13.81994 -13.35390 -13.09370 -12.68624 -12.57087 -12.35749 -12.24601 -12.15860 -12.09741 -11.87571 -11.61974 -11.37268 -11.27754 -11.16886 -11.01528 -10.90738 -10.67445 -10.41914 -10.29594 -9.87539 -9.77945 -9.62716 -9.39055 -9.21763 -8.62310 -8.10251 -7.71038 -6.23215 -4.31390 0.15852 0.51713 0.94628 2.76485 3.19488 3.19630 3.28489 3.32182 3.58657 4.08876 4.27275 4.47995 4.53600 4.61510 4.64135 4.85553 4.95416 5.04868 5.09244 5.15724 5.32402 5.47996 5.56529 5.56800 5.66958 5.72931 5.85401 5.86398 5.94101 5.99245 6.05359 6.14768 6.17140 6.44400 6.47142 6.62684 6.76897 6.83252 7.04704 7.38579 7.47337 7.55615 7.67689 7.80076 8.13888 8.71132 9.37313 9.49520 10.83704 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021662 B = 0.002395 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.296130 B =11688.397788 C =12199.469384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.071 3.929 3 Si 0.899 3.101 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.536 4.536 8 H 0.061 0.939 9 C 0.251 3.749 10 O -0.579 6.579 11 C -0.144 4.144 12 C 0.037 3.963 13 N -0.526 5.526 14 C 0.045 3.955 15 C 0.119 3.881 16 N -1.115 6.115 17 S 2.699 3.301 18 O -0.962 6.962 19 O -0.954 6.954 20 C -0.676 4.676 21 C -0.019 4.019 22 C -0.140 4.140 23 C -0.065 4.065 24 C -0.143 4.143 25 C -0.020 4.020 26 C 0.060 3.940 27 H 0.266 0.734 28 H 0.377 0.623 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.040 0.960 33 H 0.041 0.959 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.418 0.582 38 H 0.142 0.858 39 H 0.134 0.866 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.139 0.861 43 H 0.048 0.952 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.763 -21.423 3.554 21.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.131 4.131 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.574 4.574 8 H 0.079 0.921 9 C 0.211 3.789 10 O -0.387 6.387 11 C -0.184 4.184 12 C -0.090 4.090 13 N -0.250 5.250 14 C -0.086 4.086 15 C -0.007 4.007 16 N -0.876 5.876 17 S 2.788 3.212 18 O -0.953 6.953 19 O -0.944 6.944 20 C -0.762 4.762 21 C -0.038 4.038 22 C -0.158 4.158 23 C -0.083 4.083 24 C -0.162 4.162 25 C -0.039 4.039 26 C -0.067 4.067 27 H 0.076 0.924 28 H 0.226 0.774 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.253 0.747 38 H 0.160 0.840 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.157 0.843 43 H 0.066 0.934 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.528 -22.226 3.946 22.580 hybrid contribution 0.635 1.658 0.074 1.777 sum 1.164 -20.568 4.019 20.989 Atomic orbital electron populations 1.69744 1.05922 1.27303 1.50323 1.25003 0.94992 0.99437 0.93697 0.86426 0.80122 0.83084 0.77674 1.19712 1.20798 1.20925 1.21566 0.93542 0.90672 1.51653 0.92089 1.19530 0.86863 0.90571 0.81959 1.86137 1.51405 1.56676 1.44454 1.23256 1.02760 0.91792 1.00548 1.22946 0.94256 0.96469 0.95352 1.63535 1.09010 1.21771 1.30730 1.22332 0.96582 0.93646 0.96001 1.21344 0.94437 0.92153 0.92741 1.55417 1.20980 1.48769 1.62444 1.01722 0.73471 0.72835 0.73183 1.93585 1.57760 1.75733 1.68187 1.93602 1.50714 1.76780 1.73339 1.30982 1.04869 1.17500 1.22887 1.21031 0.93028 0.97620 0.92101 1.21350 1.00701 0.95336 0.98462 1.21522 0.93643 0.96533 0.96626 1.21310 0.96666 0.99965 0.98262 1.20940 0.98595 0.91366 0.93042 1.22992 0.95146 0.90225 0.98306 0.92421 0.77385 0.90351 0.92589 0.91452 0.94124 0.94113 0.90667 0.90100 0.90831 0.74699 0.84011 0.84848 0.85221 0.85058 0.84281 0.93385 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.47 10.75 55.43 0.60 -22.88 16 2 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 3 Si 0.90 20.38 29.54 -169.99 -5.02 15.35 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.54 -14.06 8.27 -34.44 -0.28 -14.34 16 8 H 0.06 1.59 7.79 -52.49 -0.41 1.19 16 9 C 0.25 6.07 0.87 -89.64 -0.08 5.99 16 10 O -0.58 -14.78 13.16 -35.23 -0.46 -15.24 16 11 C -0.14 -3.24 5.37 -24.91 -0.13 -3.38 16 12 C 0.04 0.70 6.21 -2.84 -0.02 0.68 16 13 N -0.53 -9.51 5.16 -231.26 -1.19 -10.70 16 14 C 0.04 0.63 4.68 -3.82 -0.02 0.61 16 15 C 0.12 1.43 6.25 -4.04 -0.03 1.40 16 16 N -1.11 -11.25 6.00 -10.61 -0.06 -11.31 16 17 S 2.70 30.41 5.74 -107.50 -0.62 29.79 16 18 O -0.96 -12.65 17.28 -57.17 -0.99 -13.64 16 19 O -0.95 -13.58 16.75 -57.17 -0.96 -14.54 16 20 C -0.68 -6.88 5.95 -39.58 -0.24 -7.12 16 21 C -0.02 -0.18 9.52 -39.58 -0.38 -0.56 16 22 C -0.14 -1.15 10.05 -39.58 -0.40 -1.55 16 23 C -0.07 -0.47 10.05 -39.58 -0.40 -0.87 16 24 C -0.14 -1.10 10.05 -39.58 -0.40 -1.49 16 25 C -0.02 -0.18 9.52 -39.58 -0.38 -0.56 16 26 C 0.06 1.25 5.86 -2.30 -0.01 1.24 16 27 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 28 H 0.38 9.71 7.56 45.56 0.34 10.06 16 29 H 0.08 1.87 7.54 -51.93 -0.39 1.48 16 30 H 0.06 1.29 8.04 -51.93 -0.42 0.88 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.04 0.69 6.91 -51.93 -0.36 0.33 16 33 H 0.04 0.58 7.96 -51.93 -0.41 0.17 16 34 H 0.07 0.95 8.07 -51.93 -0.42 0.53 16 35 H 0.08 1.03 6.75 -51.93 -0.35 0.68 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.42 3.42 8.65 -34.47 -0.30 3.12 16 38 H 0.14 1.29 7.61 -52.48 -0.40 0.89 16 39 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 41 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.14 1.07 7.62 -52.49 -0.40 0.67 16 43 H 0.05 0.96 7.70 -51.93 -0.40 0.56 16 44 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 LS Contribution 372.72 15.07 5.62 5.62 Total: -1.00 -31.88 372.72 -11.52 -43.41 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -5.58 Total: 12.31 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -2.85 Total: -18.18 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: -0.66 Total: -44.89 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -2.41 Total: -43.42 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 30.41 SS G_CDS: -0.62 Total: 29.79 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.88 -11.52 -43.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592149979.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.323 kcal (2) G-P(sol) polarization free energy of solvation -31.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds