Wall clock time and date at job start Tue Mar 31 2020 23:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00093 * 2 1 4 4 H 1.48498 * 109.46925 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47196 * 299.99838 * 3 2 1 6 6 H 1.48501 * 109.46969 * 59.99729 * 3 2 1 7 7 C 1.37882 * 119.99580 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99318 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00439 * 0.02562 * 7 2 1 10 10 O 1.42904 * 110.87381 * 62.38697 * 9 7 2 11 11 C 1.55147 * 110.99147 * 298.54911 * 9 7 2 12 12 C 1.54314 * 103.01489 * 206.25282 * 11 9 7 13 13 N 1.47439 * 107.23886 * 22.28261 * 12 11 9 14 14 C 1.46901 * 111.00392 * 123.25418 * 13 12 11 15 15 C 1.53000 * 109.46769 * 69.87306 * 14 13 12 16 16 N 1.46499 * 109.46840 * 179.97438 * 15 14 13 17 17 S 1.65599 * 120.00012 * 165.00017 * 16 15 14 18 18 O 1.42097 * 106.40866 * 178.54114 * 17 16 15 19 19 O 1.42102 * 106.40573 * 311.46330 * 17 16 15 20 20 C 1.76207 * 107.21714 * 65.00092 * 17 16 15 21 21 C 1.38236 * 120.00100 * 269.72665 * 20 17 16 22 22 C 1.38231 * 119.99933 * 179.80819 * 21 20 17 23 23 C 1.38238 * 119.99989 * 0.39757 * 22 21 20 24 24 C 1.38231 * 119.99923 * 359.85841 * 23 22 21 25 25 C 1.38235 * 119.99554 * 89.99944 * 20 17 16 26 26 C 1.47849 * 108.56318 * 0.98524 * 13 12 11 27 27 H 0.97008 * 120.00270 * 0.02562 * 1 2 3 28 28 H 0.96697 * 114.00641 * 297.61441 * 10 9 7 29 29 H 1.08996 * 110.70426 * 87.86627 * 11 9 7 30 30 H 1.08999 * 110.85090 * 324.70833 * 11 9 7 31 31 H 1.09001 * 109.89065 * 262.87244 * 12 11 9 32 32 H 1.09005 * 110.01772 * 141.76563 * 12 11 9 33 33 H 1.09001 * 109.46874 * 309.87586 * 14 13 12 34 34 H 1.08992 * 109.47407 * 189.87604 * 14 13 12 35 35 H 1.09002 * 109.47398 * 300.00295 * 15 14 13 36 36 H 1.09001 * 109.47194 * 60.00475 * 15 14 13 37 37 H 0.97001 * 120.00191 * 345.00817 * 16 15 14 38 38 H 1.08003 * 119.99947 * 0.02562 * 21 20 17 39 39 H 1.07995 * 120.00116 * 180.23558 * 22 21 20 40 40 H 1.07996 * 119.99863 * 179.83228 * 23 22 21 41 41 H 1.08001 * 120.00368 * 179.97438 * 24 23 22 42 42 H 1.07991 * 120.00245 * 359.97438 * 25 20 17 43 43 H 1.08999 * 110.36998 * 94.73710 * 26 13 12 44 44 H 1.08999 * 110.37150 * 217.06985 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4609 -2.6310 -1.1829 11 6 0.3731 -2.6341 1.2726 12 6 0.2529 -4.1621 1.4514 13 7 1.3915 -4.7758 0.7438 14 6 2.1852 -5.6150 1.6515 15 6 1.3821 -6.8623 2.0258 16 7 2.1738 -7.6995 2.9305 17 16 1.4423 -8.9110 3.7904 18 8 2.4690 -9.5504 4.5360 19 8 0.2886 -8.3375 4.3898 20 6 0.8598 -10.0985 2.6261 21 6 -0.4151 -9.9866 2.1037 22 6 -0.8706 -10.9159 1.1874 23 6 -0.0542 -11.9619 0.7996 24 6 1.2188 -12.0768 1.3261 25 6 1.6758 -11.1452 2.2395 26 6 2.2183 -3.6985 0.1593 27 1 -0.4851 0.8401 -0.0004 28 1 -0.2246 -1.9553 -1.2755 29 1 -0.6078 -2.1863 1.1132 30 1 0.8659 -2.1828 2.1337 31 1 -0.6846 -4.5134 1.0202 32 1 0.2927 -4.4182 2.5102 33 1 2.4219 -5.0510 2.5537 34 1 3.1092 -5.9128 1.1562 35 1 0.4579 -6.5645 2.5211 36 1 1.1453 -7.4263 1.1235 37 1 3.1265 -7.5441 3.0260 38 1 -1.0541 -9.1710 2.4088 39 1 -1.8653 -10.8263 0.7763 40 1 -0.4110 -12.6894 0.0858 41 1 1.8566 -12.8941 1.0235 42 1 2.6703 -11.2349 2.6507 43 1 3.0358 -3.4401 0.8323 44 1 2.6074 -4.0035 -0.8121 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592149979.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:22 Heat of formation + Delta-G solvation = -114.367844 kcal Electronic energy + Delta-G solvation = -27358.371303 eV Core-core repulsion = 23401.536365 eV Total energy + Delta-G solvation = -3956.834939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.18892 -40.01104 -38.40818 -37.33152 -37.01623 -35.66261 -34.15993 -32.26630 -31.98380 -31.76336 -29.92410 -28.47551 -26.10885 -24.22490 -23.90434 -23.61017 -21.44510 -21.40521 -20.56453 -19.22091 -18.96473 -18.43972 -17.42626 -17.09538 -16.94549 -16.83767 -16.33471 -16.19659 -15.71186 -15.59740 -15.38895 -15.28610 -14.57749 -14.45880 -14.27016 -14.02561 -13.68354 -13.65490 -13.31022 -13.28804 -13.25513 -13.18823 -13.14901 -12.97197 -12.68645 -12.59210 -12.25111 -12.20449 -12.19009 -12.02916 -11.76255 -11.60670 -11.07268 -10.59282 -10.54210 -10.38607 -10.04690 -10.01607 -9.18203 -8.20634 -6.35944 -0.68952 -0.17136 0.32778 1.39195 1.43067 1.52881 1.91758 2.38594 2.50447 2.77132 3.03772 3.15119 3.32828 3.80329 3.86836 3.96356 4.00488 4.08924 4.12493 4.13563 4.33078 4.40798 4.43515 4.45322 4.55707 4.59417 4.72877 4.76979 4.91703 4.96275 4.97500 5.04851 5.10950 5.13167 5.29289 5.30948 5.40759 5.50750 5.57886 5.82009 5.88964 5.94875 6.01127 6.22341 6.29026 6.70154 7.35670 7.47473 8.84567 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021662 B = 0.002395 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.296130 B =11688.397788 C =12199.469384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.030 3.970 3 Si 0.958 3.042 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.559 4.559 8 H 0.055 0.945 9 C 0.232 3.768 10 O -0.586 6.586 11 C -0.138 4.138 12 C 0.046 3.954 13 N -0.527 5.527 14 C 0.042 3.958 15 C 0.126 3.874 16 N -1.107 6.107 17 S 2.716 3.284 18 O -0.983 6.983 19 O -0.989 6.989 20 C -0.684 4.684 21 C -0.040 4.040 22 C -0.147 4.147 23 C -0.063 4.063 24 C -0.145 4.145 25 C -0.035 4.035 26 C 0.068 3.932 27 H 0.268 0.732 28 H 0.371 0.629 29 H 0.056 0.944 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.042 0.958 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.428 0.572 38 H 0.140 0.860 39 H 0.153 0.847 40 H 0.160 0.840 41 H 0.159 0.841 42 H 0.148 0.852 43 H 0.054 0.946 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.384 -23.102 3.087 23.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.171 4.171 3 Si 0.784 3.216 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.597 4.597 8 H 0.073 0.927 9 C 0.192 3.808 10 O -0.394 6.394 11 C -0.177 4.177 12 C -0.081 4.081 13 N -0.251 5.251 14 C -0.087 4.087 15 C 0.000 4.000 16 N -0.869 5.869 17 S 2.808 3.192 18 O -0.974 6.974 19 O -0.979 6.979 20 C -0.773 4.773 21 C -0.059 4.059 22 C -0.166 4.166 23 C -0.081 4.081 24 C -0.164 4.164 25 C -0.054 4.054 26 C -0.059 4.059 27 H 0.077 0.923 28 H 0.219 0.781 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.265 0.735 38 H 0.158 0.842 39 H 0.171 0.829 40 H 0.178 0.822 41 H 0.176 0.824 42 H 0.166 0.834 43 H 0.072 0.928 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.176 -23.900 3.508 24.185 hybrid contribution 0.429 2.108 0.169 2.158 sum 1.605 -21.792 3.678 22.159 Atomic orbital electron populations 1.69832 1.06790 1.27964 1.50346 1.25684 0.95815 1.02218 0.93404 0.85516 0.78992 0.79508 0.77611 1.19492 1.20565 1.20577 1.21848 0.93511 0.92145 1.52235 0.92705 1.19800 0.87571 0.91438 0.81985 1.86128 1.51389 1.56407 1.45442 1.23068 1.00988 0.94343 0.99280 1.22849 0.94870 0.93719 0.96710 1.63470 1.08947 1.20785 1.31941 1.22442 0.97134 0.93659 0.95489 1.21191 0.93923 0.91569 0.93322 1.55167 1.21406 1.48421 1.61898 1.00927 0.72481 0.72702 0.73130 1.93550 1.58398 1.76104 1.69324 1.93555 1.51892 1.77667 1.74738 1.30671 1.05515 1.17778 1.23360 1.21194 0.93085 0.98511 0.93122 1.21674 1.01835 0.95132 0.97910 1.21948 0.93264 0.96480 0.96439 1.21697 0.97249 1.00095 0.97340 1.21206 0.99043 0.91522 0.93674 1.22826 0.94732 0.89732 0.98611 0.92303 0.78055 0.92491 0.93899 0.91162 0.92165 0.94014 0.88809 0.90820 0.89807 0.73505 0.84227 0.82923 0.82199 0.82370 0.83421 0.92829 0.91376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.33 10.75 21.45 0.23 -48.10 16 2 C 0.03 1.54 5.29 84.66 0.45 1.99 16 3 Si 0.96 41.81 29.54 68.60 2.03 43.84 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 6 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.56 -29.57 8.27 25.60 0.21 -29.36 16 8 H 0.05 2.88 7.79 -2.91 -0.02 2.86 16 9 C 0.23 11.29 0.87 -10.16 -0.01 11.28 16 10 O -0.59 -30.32 13.16 -148.98 -1.96 -32.28 16 11 C -0.14 -6.24 5.37 31.78 0.17 -6.07 16 12 C 0.05 1.70 6.21 86.65 0.54 2.24 16 13 N -0.53 -18.36 5.16 -885.58 -4.57 -22.93 16 14 C 0.04 1.12 4.68 86.30 0.40 1.52 16 15 C 0.13 2.82 6.25 86.38 0.54 3.36 16 16 N -1.11 -20.91 6.00 -187.49 -1.12 -22.03 16 17 S 2.72 59.96 5.74 -56.49 -0.32 59.64 16 18 O -0.98 -25.42 17.28 -128.00 -2.21 -27.63 16 19 O -0.99 -28.25 16.75 -128.00 -2.14 -30.39 16 20 C -0.68 -13.27 5.95 22.27 0.13 -13.14 16 21 C -0.04 -0.74 9.52 22.27 0.21 -0.53 16 22 C -0.15 -2.11 10.05 22.27 0.22 -1.88 16 23 C -0.06 -0.73 10.05 22.27 0.22 -0.51 16 24 C -0.15 -1.82 10.05 22.27 0.22 -1.59 16 25 C -0.04 -0.58 9.52 22.27 0.21 -0.37 16 26 C 0.07 2.80 5.86 86.77 0.51 3.31 16 27 H 0.27 13.55 8.31 -92.70 -0.77 12.78 16 28 H 0.37 19.61 7.56 -74.06 -0.56 19.05 16 29 H 0.06 2.79 7.54 -2.39 -0.02 2.77 16 30 H 0.04 2.00 8.04 -2.39 -0.02 1.98 16 31 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.06 1.97 6.91 -2.38 -0.02 1.96 16 33 H 0.04 1.11 7.96 -2.39 -0.02 1.10 16 34 H 0.09 2.14 8.07 -2.39 -0.02 2.12 16 35 H 0.07 1.78 6.75 -2.39 -0.02 1.76 16 36 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.43 6.32 8.65 -96.75 -0.84 5.49 16 38 H 0.14 2.52 7.61 -2.91 -0.02 2.50 16 39 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 40 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 41 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 42 H 0.15 2.05 7.62 -2.92 -0.02 2.03 16 43 H 0.05 2.10 7.70 -2.39 -0.02 2.08 16 44 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 Total: -1.00 -67.97 372.72 -6.41 -74.38 By element: Atomic # 1 Polarization: 35.62 SS G_CDS: -0.37 Total: 35.25 kcal Atomic # 6 Polarization: -33.78 SS G_CDS: 4.04 Total: -29.74 kcal Atomic # 7 Polarization: -87.60 SS G_CDS: -5.46 Total: -93.07 kcal Atomic # 8 Polarization: -83.99 SS G_CDS: -6.32 Total: -90.31 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Atomic # 16 Polarization: 59.96 SS G_CDS: -0.32 Total: 59.64 kcal Total: -67.97 -6.41 -74.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592149979.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.988 kcal (2) G-P(sol) polarization free energy of solvation -67.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds